mRNA_P-wetherbeei_contig1732.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1732.5.1
Unique NamemRNA_P-wetherbeei_contig1732.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1732.5.1 vs. uniprot
Match: A0A2N9HNV4_FAGSY (CCHC-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HNV4_FAGSY)

HSP 1 Score: 82.8 bits (203), Expect = 1.650e-15
Identity = 62/163 (38.04%), Postives = 90/163 (55.21%), Query Frame = 1
Query:    1 YRSIIGSPMYAARITRLDVAYQVRSLARYAVTPTSAHMMAAKRVLRYLIGTPMPGLLNYRQP----AATDA--AGSTWLG----------ADTPTVIREDNTAALTVAMAAGHTRQSRHIHICYHFTRELVAAGVIVVEQVSTVGQMASGLTKNVGLKRLLAL 441
            YRS++G+  Y    TR D+++ V SL ++  +PTSA+++AAKRVLRY+ GT   GLL    P      TDA  A   W+           A  PTV   DNT+A+++A       +++H+ + YHF RE V  G + V+ + TV Q+A  LTK +   R L L
Sbjct: 1005 YRSLVGALQYLT-FTRPDLSFAVNSLCQHMHSPTSANLVAAKRVLRYVRGTLSHGLLFQPGPMHLTVFTDADWAEVAWIRMLLRDLHVFLAHCPTVWC-DNTSAISLASNPVFHARTKHVEVDYHFVRERVVRGDLNVQFIPTVDQLADLLTKALPTPRFLQL 1165          
BLAST of mRNA_P-wetherbeei_contig1732.5.1 vs. uniprot
Match: A0A8J5EUC0_ZINOF (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5EUC0_ZINOF)

HSP 1 Score: 77.8 bits (190), Expect = 9.000e-14
Identity = 59/142 (41.55%), Postives = 76/142 (53.52%), Query Frame = 1
Query:    1 YRSIIGSPMYAARITRLDVAYQVRSLARYAVTPTSAHMMAAKRVLRYLIGTPMPGLLNYRQPAATDAAGSTWLG-----ADTPTVIREDNTAALTVAMAAGHTRQSRHIHICYHFTRELVAAGVIVVEQVSTVGQMASGLTK 411
            YR I+GS +Y +  TR D+++ V  L+RY   PTSAH+ AAKR LRY+ GT   GL     PA  D    T L      A TP +I  DN AA+ +A    H  +++HI + YH  RE V    I +  V T  Q A  LTK
Sbjct:  786 YRGIVGSLIYLSH-TRPDLSFLVNLLSRYMSQPTSAHLTAAKRALRYVKGTMDLGLFF---PATGDNKSFTNLEGYLDKAATPLMI--DNQAAIAIAKDPTHFSRAKHIKVRYHALREAVKDKEIQLIHVPTKNQKADMLTK 921          
BLAST of mRNA_P-wetherbeei_contig1732.5.1 vs. uniprot
Match: A0A8J5FA76_ZINOF (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5FA76_ZINOF)

HSP 1 Score: 76.6 bits (187), Expect = 2.000e-13
Identity = 65/180 (36.11%), Postives = 87/180 (48.33%), Query Frame = 1
Query:    1 YRSIIGSPMYAARITRLDVAYQVRSLARYAVTPTSAHMMAAKRVLRYLIGTPMPGLLNYRQPAATDA---------AGSTWLGAD------TPTVIREDNTAALTVAMAAGHTRQSRHIHICYHFTRELVAAGVIVVEQVSTVGQMASGLTK------------NVGLKRLLALRACTMG 459
            YR I+GS +Y +  TR D+++ V  L+RY   PTSAH+ AAKR LRY+ GT   GL     PA  D          + S + GA+      TP +I  DN AA+ +A    H  +++HI + YH  RE +    I +  V T  Q A  LTK             +GLK L  L A   G
Sbjct:  311 YRGIVGSLIYLSH-TRPDLSFLVNLLSRYMSQPTSAHLAAAKRALRYVKGTMDLGLFF---PATGDNESFTNLEGYSDSDYAGAEDAEKAATPLMI--DNQAAIAIAKDPTHFSRAKHIKVRYHALREAIKDKEIQLIHVPTENQKADMLTKVLRKTLFIHHRDRIGLKSLRFLNATKSG 484          
BLAST of mRNA_P-wetherbeei_contig1732.5.1 vs. uniprot
Match: A0A2N9I1C1_FAGSY (Integrase catalytic domain-containing protein n=3 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9I1C1_FAGSY)

HSP 1 Score: 76.6 bits (187), Expect = 2.350e-13
Identity = 57/164 (34.76%), Postives = 83/164 (50.61%), Query Frame = 1
Query:   10 IIGSPMYAARITRLDVAYQVRSLARYAVTPTSAHMMAAKRVLRYLIGTPMPGLLNYRQP-----------AATDAAGSTWLGA---------DTPTVIREDNTAALTVAMAAGHTRQSRHIHICYHFTRELVAAGVIVVEQVSTVGQMASGLTKNVGLKRLLAL 441
            +IG+  Y    TR D+++ V SL ++  +PT  H++AAKRVLRY+ GT   G+L    P           AA  AA   W+            +P VI  DNT+A+ +A       +++H+ + YHF RE V  G + V  +ST  Q+A  LTK +   R L L
Sbjct: 1229 LIGALQYLT-FTRPDLSFAVNSLCQHMQSPTEGHLVAAKRVLRYVQGTLSHGVLFQPGPRVLTAFTDSDWAAIGAAELAWIRMLLCDFGVILPSPPVIWCDNTSAIALASNPVFHARTKHVEVDYHFVRERVVRGDLRVLFISTNDQLADLLTKALPAPRFLEL 1391          
BLAST of mRNA_P-wetherbeei_contig1732.5.1 vs. uniprot
Match: A0A2N9IQM4_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IQM4_FAGSY)

HSP 1 Score: 75.9 bits (185), Expect = 4.250e-13
Identity = 54/166 (32.53%), Postives = 86/166 (51.81%), Query Frame = 1
Query:    1 YRSIIGSPMYAARITRLDVAYQVRSLARYAVTPTSAHMMAAKRVLRYLIGT--------PMPGLLNYRQPAATDAAGSTWLG----------ADTPTVIREDNTAALTVAMAAGHTRQSRHIHICYHFTRELVAAGVIVVEQVSTVGQMASGLTKNVGLKRLLALR 444
            YRS++G+  Y    TR D+++ V  + +Y + PT+ H+ AAKRVLRY+ GT        P     +  +  A  +A   W+           + TP ++  DN +AL +A       +++HI + +HF RE V    ++V+ VSTV Q+A   TK++   R L LR
Sbjct:  872 YRSMVGALHYLT-FTRPDISFAVHQVCQYMLAPTTTHLAAAKRVLRYIRGTLHHGIEFTPWSSTESEYRALAFASAELCWIRTLLKDLGIFISATP-ILWCDNVSALAIASNPVFHARTKHIEVDFHFVRERVLRKDLLVKFVSTVDQLADIFTKSLPTNRFLDLR 1035          
BLAST of mRNA_P-wetherbeei_contig1732.5.1 vs. uniprot
Match: A0A8J5F6A5_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5F6A5_ZINOF)

HSP 1 Score: 75.1 bits (183), Expect = 7.790e-13
Identity = 58/149 (38.93%), Postives = 78/149 (52.35%), Query Frame = 1
Query:    1 YRSIIGSPMYAARITRLDVAYQVRSLARYAVTPTSAHMMAAKRVLRYLIGTPMPGLL-----------NYRQPAATDAAGSTWLG-ADTPTVIREDNTAALTVAMAAGHTRQSRHIHICYHFTRELVAAGVIVVEQVSTVGQMASGLTK 411
            YR I+GS +Y +  TR D+++ V  L+RY   PTSAH+ AAKR LRY+ GT   GL            N    + +D AG+     A TP +I  DN AA+ +A    H  +++HI + YH  RE V    I +  V T  Q A  LTK
Sbjct:  590 YRGIVGSLIYLSH-TRPDLSFLVNLLSRYMSQPTSAHLAAAKRALRYVKGTMDLGLFFPPTGDNESFTNLEGYSDSDYAGAEDAKKAATPLMI--DNQAAIAIAKDPTHFSRAKHIKVRYHTLREAVKDKEIQLIHVPTENQKADMLTK 735          
BLAST of mRNA_P-wetherbeei_contig1732.5.1 vs. uniprot
Match: A0A2N9HGK2_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HGK2_FAGSY)

HSP 1 Score: 73.9 bits (180), Expect = 1.260e-12
Identity = 55/152 (36.18%), Postives = 80/152 (52.63%), Query Frame = 1
Query:    1 YRSIIGSPMYAARITRLDVAYQVRSLARYAVTPTSAHMMAAKRVLRYLIGTPMPGLLNYRQPAATDAAGSTWLGADTPTVIRE-DNTAALTVAMAAGHT---RQSRHIHICYHFTRELVAAGVIVVEQVSTVGQMASGLTKNVGLKRLLALR 444
            Y+ I+G+  Y   +TR D+A+ V  L ++  +PTSAH +AAKRVL YL GT   GL     P  +    S +  +D P+ + +  +T  L   + A +     Q +HI I YHF  E V    I ++ +STV Q+A   TK +   R L LR
Sbjct:  168 YKQIVGTLQYCT-LTRPDIAFSVNQLCQFMHSPTSAHWIAAKRVLSYLKGTIDHGLF---LPTGSLQL-SAYCESDWPSGLDDCRSTGGLCAIILASNPVCHAQMKHIEIDYHFVHEKVVRNGISIKYISTVDQVADIFTKGLTSARFLLLR 314          
BLAST of mRNA_P-wetherbeei_contig1732.5.1 vs. uniprot
Match: UPI00090154DA (uncharacterized protein LOC109130484 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00090154DA)

HSP 1 Score: 70.5 bits (171), Expect = 4.070e-12
Identity = 59/164 (35.98%), Postives = 74/164 (45.12%), Query Frame = 1
Query:    1 YRSIIGSPMYAARITRLDVAYQVRSLARYAVTPTSAHMMAAKRVLRYLIGTPMPGL-------LNYRQPAATDAAGS-------------------TWLGADTPTVIREDNTAAL-TVAMAAGHTRQSRHIHICYHFTRELVAAGVIVVEQVSTVGQMASGLTK 411
            YRSI+GS  Y A  TR D +Y V  L++Y  +PT  H  AAKRVLRYL GTP   +       L+    +  D AG                    +W       V+R    A   + A  A   R  +HI I YHF R +V  G + V  VST  Q+A  LTK
Sbjct:   21 YRSIVGSFQYLA-FTRPDNSYAVNRLSQYMHSPTDQHWQAAKRVLRYLKGTPTHVVFLKRHNPLSVHAYSDADWAGDVDDYVSTNAYVTYLGHNPVSWSSKKQTEVLRSSTEAEYRSGANTASELRWMKHIAIDYHFIRTMVQDGALRVVHVSTRDQLADLLTK 183          
BLAST of mRNA_P-wetherbeei_contig1732.5.1 vs. uniprot
Match: A0A2N9GJW7_FAGSY (Uncharacterized protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GJW7_FAGSY)

HSP 1 Score: 72.0 bits (175), Expect = 9.470e-12
Identity = 50/168 (29.76%), Postives = 79/168 (47.02%), Query Frame = 1
Query:    1 YRSIIGSPMYAARITRLDVAYQVRSLARYAVTPTSAHMMAAKRVLRYLIGTPMPGLLNY----RQPAATDA---------------------AGSTWLG----ADTPTVIREDNTAALTVAMAAGHTRQSRHIHICYHFTRELVAAGVIVVEQVSTVGQMASGLTKNV 417
            Y S IGS MYA   TR D+ + V  ++RY   P  AH  A KR+LRYL GT    L  +    R    +DA                        +W      A+   ++  D+T+AL  A    +  +++HI + YH+ R++V+ G ++++ +ST   +A  LTK +
Sbjct: 1095 YASAIGSLMYAMLCTRPDICFAVGMVSRYQSNPGPAHWRAVKRILRYLRGTSDHALCYHGGDLRLTGYSDADWASDKDERKSTSGYAFILGGGAVSWCSVTAHAEDAVLLYSDSTSALAYAKDPKYHGKAKHIELRYHYIRDMVSQGEVILQHISTGSMVADPLTKPI 1262          
BLAST of mRNA_P-wetherbeei_contig1732.5.1 vs. uniprot
Match: A0A2N9IKE8_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IKE8_FAGSY)

HSP 1 Score: 70.9 bits (172), Expect = 2.190e-11
Identity = 52/167 (31.14%), Postives = 83/167 (49.70%), Query Frame = 1
Query:    1 YRSIIGSPMYAARITRLDVAYQVRSLARYAVTPTSAHMMAAKRVLRYLIGTPMPGLLNYRQPAA----TDA-----------AGSTWLGADTPTVIREDNTAALTVAMAAGHTRQSRHIHICYHFTRELVAAGVIVVEQVSTVGQMASGLTKNVGLKRLLALRACTM 456
            YR ++G+  Y    TR D+++ V  + +Y  +PTS H+ AAKR+LRYL GT   GL     P      TDA             S  +  + P ++  +N +   +A       +++HI + ++F RE V    + V+ VST+ Q+    TK++   R L LR+C M
Sbjct:  441 YRILVGALHYLT-FTRPDISFAVHQVCQYMASPTSVHLTAAKRILRYLKGTLHLGLSFRPGPLTLSTFTDADWDDDPDDRRSTSSLLVYLEAP-ILWCENISTFAIASNPVFHARTKHIEVDFNFVRERVLRKDLAVKFVSTLDQLVDIFTKSLPAHRFLDLRSCLM 605          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1732.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2N9HNV4_FAGSY1.650e-1538.04CCHC-type domain-containing protein n=1 Tax=Fagus ... [more]
A0A8J5EUC0_ZINOF9.000e-1441.55Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8J5FA76_ZINOF2.000e-1336.11Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9I1C1_FAGSY2.350e-1334.76Integrase catalytic domain-containing protein n=3 ... [more]
A0A2N9IQM4_FAGSY4.250e-1332.53Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5F6A5_ZINOF7.790e-1338.93Uncharacterized protein n=1 Tax=Zingiber officinal... [more]
A0A2N9HGK2_FAGSY1.260e-1236.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI00090154DA4.070e-1235.98uncharacterized protein LOC109130484 n=1 Tax=Camel... [more]
A0A2N9GJW7_FAGSY9.470e-1229.76Uncharacterized protein n=2 Tax=Fagus sylvatica Ta... [more]
A0A2N9IKE8_FAGSY2.190e-1131.14Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1732contigP-wetherbeei_contig1732:6021..6482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3750.XP_008390439.1
PFAMsRVT_2,Retrotran_gag_2
Model size462
Max annot lvl35493|Streptophyta
KEGG koko:K13459
KEGG Pathwayko04626,map04626
Hectar predicted targeting categorymitochondrion
Exons1
Evalue2.27e-10
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37YXJ@33090|Viridiplantae,3GHMT@35493|Streptophyta
DescriptionMitochondrial protein
Cds size438
COG categoryL
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186114.1228342-CDS-P-wetherbeei_contig1732:6020..64581683186114.1228342-CDS-P-wetherbeei_contig1732:6020..6458Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1732 6021..6458 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186114.1350574-UTR-P-wetherbeei_contig1732:6458..64821683186114.1350574-UTR-P-wetherbeei_contig1732:6458..6482Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1732 6459..6482 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1732.5.1prot_P-wetherbeei_contig1732.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1732 6021..6458 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1732.5.1

>prot_P-wetherbeei_contig1732.5.1 ID=prot_P-wetherbeei_contig1732.5.1|Name=mRNA_P-wetherbeei_contig1732.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=146bp
MYAARITRLDVAYQVRSLARYAVTPTSAHMMAAKRVLRYLIGTPMPGLLN
YRQPAATDAAGSTWLGADTPTVIREDNTAALTVAMAAGHTRQSRHIHICY
HFTRELVAAGVIVVEQVSTVGQMASGLTKNVGLKRLLALRACTMG*
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mRNA from alignment at P-wetherbeei_contig1732:6021..6482-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1732.5.1 ID=mRNA_P-wetherbeei_contig1732.5.1|Name=mRNA_P-wetherbeei_contig1732.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig1732:6021..6482- (Phaeothamnion wetherbeei SAG_119_79)
TACCGGAGCATCATTGGATCGCCGATGTACGCGGCGCGCATCACCCGGCT CGATGTGGCATACCAGGTACGGAGCCTGGCGCGCTATGCGGTGACGCCGA CGTCGGCGCATATGATGGCAGCGAAACGCGTGCTGCGGTACCTTATCGGG ACGCCAATGCCGGGGCTGCTCAACTACCGGCAGCCAGCAGCTACGGACGC TGCTGGCTCAACATGGCTTGGAGCAGACACGCCAACGGTTATCCGCGAGG ACAACACGGCGGCGCTGACGGTAGCGATGGCGGCTGGACACACGCGCCAG TCGCGCCATATCCACATCTGCTACCACTTCACGCGGGAGCTGGTGGCGGC GGGCGTGATCGTAGTGGAGCAGGTCAGCACGGTAGGCCAGATGGCCAGCG GTCTGACAAAGAACGTCGGGCTGAAGCGGCTGCTAGCGCTTCGGGCTTGC ACGATGGGATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1732:6021..6482-

>mRNA_P-wetherbeei_contig1732.5.1 ID=mRNA_P-wetherbeei_contig1732.5.1|Name=mRNA_P-wetherbeei_contig1732.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=438bp|location=Sequence derived from alignment at P-wetherbeei_contig1732:6021..6482- (Phaeothamnion wetherbeei SAG_119_79)
ATGTACGCGGCGCGCATCACCCGGCTCGATGTGGCATACCAGGTACGGAG
CCTGGCGCGCTATGCGGTGACGCCGACGTCGGCGCATATGATGGCAGCGA
AACGCGTGCTGCGGTACCTTATCGGGACGCCAATGCCGGGGCTGCTCAAC
TACCGGCAGCCAGCAGCTACGGACGCTGCTGGCTCAACATGGCTTGGAGC
AGACACGCCAACGGTTATCCGCGAGGACAACACGGCGGCGCTGACGGTAG
CGATGGCGGCTGGACACACGCGCCAGTCGCGCCATATCCACATCTGCTAC
CACTTCACGCGGGAGCTGGTGGCGGCGGGCGTGATCGTAGTGGAGCAGGT
CAGCACGGTAGGCCAGATGGCCAGCGGTCTGACAAAGAACGTCGGGCTGA
AGCGGCTGCTAGCGCTTCGGGCTTGCACGATGGGATAA
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