mRNA_P-wetherbeei_contig1719.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1719.1.1
Unique NamemRNA_P-wetherbeei_contig1719.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1719.1.1 vs. uniprot
Match: B8C108_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C108_THAPS)

HSP 1 Score: 68.6 bits (166), Expect = 1.380e-11
Identity = 39/96 (40.62%), Postives = 52/96 (54.17%), Query Frame = 1
Query:    1 LPTVIGRLGNEIPGLLLNPIQLPRFAATLADPR---------KLVEALAAAREEANNIFESMPADLYSPRYTVVEKKDGYEIRKYDGYAVATTPMA 261
            LPTV+ ++G+ +   L N  Q    +    D R         +L E  A   +EA N+F   P  L  P YTVV +KDGYEIR+YDGY VA+T M+
Sbjct:  188 LPTVVPKIGSRVLNALTNQAQ-KNLSELQKDVRAGDPFRSITRLQEQTAEIAQEAKNVFLETPEGLAGPPYTVVSQKDGYEIREYDGYTVASTSMS 282          
BLAST of mRNA_P-wetherbeei_contig1719.1.1 vs. uniprot
Match: A0A7S2RC75_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RC75_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 6.620e-11
Identity = 39/92 (42.39%), Postives = 51/92 (55.43%), Query Frame = 1
Query:    4 PTVIGRLGNEIPGLLLNPI--QLPRFAATLADPRKLVEAL----AAAREEANNIFESMPADLYSPRYTVVEKKDGYEIRKYDGYAVATTPMA 261
            PT++ ++G+ I G   N    QL      LADP ++ E L    A    EA NIF   P  L  P Y VVE  +GYE+R Y+GY+VA+T MA
Sbjct:  191 PTLVPKIGSSIFGAFSNQAKKQLELLQGDLADPTRIPERLSKQTADLATEARNIFLETPEGLAGPSYQVVEVCEGYEVRDYEGYSVASTSMA 282          
BLAST of mRNA_P-wetherbeei_contig1719.1.1 vs. uniprot
Match: A0A7S0FMK3_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FMK3_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 8.770e-11
Identity = 37/93 (39.78%), Postives = 54/93 (58.06%), Query Frame = 1
Query:    1 LPTVIGRLGNEIPGLLLNPIQ--LPRFAATLADPRKLVEALA----AAREEANNIFESMPADLYSPRYTVVEKKDGYEIRKYDGYAVATTPMA 261
            LPT++ +LG+ I   + N  +  L      LADP ++ E L+    +  +EA N+F   P  L  P Y V+ K +GYEIR+Y+ YAVA+T MA
Sbjct:  113 LPTLVPKLGSRIFDAISNQARQNLELLQGDLADPSRIPERLSKQASSVAKEAKNVFLETPEGLEGPAYKVLSKGEGYEIREYEAYAVASTSMA 205          
BLAST of mRNA_P-wetherbeei_contig1719.1.1 vs. uniprot
Match: A0A7R9ZGF5_9STRA (Hypothetical protein n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZGF5_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.240e-10
Identity = 36/93 (38.71%), Postives = 51/93 (54.84%), Query Frame = 1
Query:    1 LPTVIGRLGNEIPGLLLNPIQ--LPRFAATLADPRKLVEAL----AAAREEANNIFESMPADLYSPRYTVVEKKDGYEIRKYDGYAVATTPMA 261
            LPT++ +LG+ +        Q  +      LADP ++ E +    A    EA N+F   P +L  P YTVV + +GYEIR+YD Y VA+T MA
Sbjct:  198 LPTLVPKLGSRVFDAFSKQAQKQIELIQGDLADPSRIPERITKQAAEVAAEAKNVFSETPENLVGPEYTVVSRGEGYEIREYDEYDVASTSMA 290          
BLAST of mRNA_P-wetherbeei_contig1719.1.1 vs. uniprot
Match: A0A7S1ZQJ0_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZQJ0_TRICV)

HSP 1 Score: 65.5 bits (158), Expect = 1.550e-10
Identity = 37/93 (39.78%), Postives = 55/93 (59.14%), Query Frame = 1
Query:    1 LPTVIGRLGNEIPGLLLNPIQ--LPRFAATLADPRKLVEALAAARE----EANNIFESMPADLYSPRYTVVEKKDGYEIRKYDGYAVATTPMA 261
            LPT++ ++G+ I   + +  Q  L +    L+DP +L   +A   E    EA N+F   P +L  P Y VVE+ +GYEIR+Y+GY VA+T MA
Sbjct:  106 LPTLVPKIGSRIIDAMSSQAQRNLDQLRDDLSDPSQLPRKVAKRVEDLSAEAKNVFLETPENLAGPTYKVVERGEGYEIREYEGYDVASTSMA 198          
BLAST of mRNA_P-wetherbeei_contig1719.1.1 vs. uniprot
Match: A0A6V2IWI0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2IWI0_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 5.010e-10
Identity = 35/93 (37.63%), Postives = 52/93 (55.91%), Query Frame = 1
Query:    1 LPTVIGRLGNEIPGLLLNPIQ--LPRFAATLADPRKLVEAL----AAAREEANNIFESMPADLYSPRYTVVEKKDGYEIRKYDGYAVATTPMA 261
            LPT++ ++G+ I   L    Q  L +    +A+P ++ E +    A    EA N+F   P  L  P+Y VV K  GYE+R+YDGY VA+T M+
Sbjct:   48 LPTLVPKIGSRIFSALTKQTQKNLEQLRGDIANPSRIPERITKQTADLATEAKNVFLETPEGLAGPKYKVVGKGQGYELREYDGYTVASTSMS 140          
BLAST of mRNA_P-wetherbeei_contig1719.1.1 vs. uniprot
Match: A0A7S4RWL9_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RWL9_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 5.860e-10
Identity = 35/93 (37.63%), Postives = 52/93 (55.91%), Query Frame = 1
Query:    1 LPTVIGRLGNEIPGLLLNPIQ--LPRFAATLADPRKLVEAL----AAAREEANNIFESMPADLYSPRYTVVEKKDGYEIRKYDGYAVATTPMA 261
            LPT++ ++G+ I   L    Q  L +    +A+P ++ E +    A    EA N+F   P  L  P+Y VV K  GYE+R+YDGY VA+T M+
Sbjct:  179 LPTLVPKIGSRIFSALTKQTQKNLEQLRGDIANPSRIPERITKQTADLATEAKNVFLETPEGLAGPKYKVVGKGQGYELREYDGYTVASTSMS 271          
BLAST of mRNA_P-wetherbeei_contig1719.1.1 vs. uniprot
Match: A0A7S1B3Z3_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B3Z3_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 7.940e-10
Identity = 34/93 (36.56%), Postives = 52/93 (55.91%), Query Frame = 1
Query:    1 LPTVIGRLGNEIPGLLLNPI--QLPRFAATLADPRKLVEALAAARE----EANNIFESMPADLYSPRYTVVEKKDGYEIRKYDGYAVATTPMA 261
            LP+++ ++G  I   ++         F   +ADP ++ E L+A RE    E  N+F  +P +  SP+Y +VE    YEIR+Y+GY  A TPMA
Sbjct:  163 LPSLLPKVGQRIADAVVTQAIKNFEDFQGDIADPSRIPERLSAQREAIESEVRNVFSEVPENYSSPKYDLVETGLDYEIREYEGYFSAATPMA 255          
BLAST of mRNA_P-wetherbeei_contig1719.1.1 vs. uniprot
Match: A0A7S0DGY6_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DGY6_9EUKA)

HSP 1 Score: 61.6 bits (148), Expect = 3.350e-9
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 1
Query:   88 ADPRKLVEALAAAREEANNIFESMPADLYSPRYTVVEKKDGYEIRKYDGYAVATTPM 258
            ADP KL +++  A+EEA N+F   P  L  P Y+V+ + D YEIR+Y+ Y +A TPM
Sbjct:  112 ADPNKLKQSITDAQEEAKNVFRRTPTGLEMPTYSVLVQGDDYEIREYEPYTIAATPM 168          
BLAST of mRNA_P-wetherbeei_contig1719.1.1 vs. uniprot
Match: K0RJV0_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RJV0_THAOC)

HSP 1 Score: 60.8 bits (146), Expect = 7.130e-9
Identity = 37/94 (39.36%), Postives = 48/94 (51.06%), Query Frame = 1
Query:    1 LPTVIGRLG----NEIPGLLLNPIQLPRFAATLADPRKLVEALAAAREE----ANNIFESMPADLYSPRYTVVEKKDGYEIRKYDGYAVATTPM 258
            LPTV+ ++G    N I     N I+  +      DP + +E +    EE    A NIF   P  L  P Y VV   +GYEIR+YDGY VA+T M
Sbjct:  180 LPTVVPKIGSRVFNAIANQAQNNIRNLQDDIQSGDPLRSIERIQKQTEEIQKEAKNIFSETPEGLVGPPYRVVSVAEGYEIREYDGYTVASTSM 273          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1719.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
B8C108_THAPS1.380e-1140.63Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2RC75_9STRA6.620e-1142.39Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S0FMK3_9STRA8.770e-1139.78Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7R9ZGF5_9STRA1.240e-1038.71Hypothetical protein n=2 Tax=Pseudictyota dubia Ta... [more]
A0A7S1ZQJ0_TRICV1.550e-1039.78Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A6V2IWI0_9STRA5.010e-1037.63Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4RWL9_9STRA5.860e-1037.63Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S1B3Z3_9STRA7.940e-1036.56Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S0DGY6_9EUKA3.350e-947.37Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
K0RJV0_THAOC7.130e-939.36Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1719contigP-wetherbeei_contig1719:202..462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog35128.Thaps22096
PFAMsSOUL
Model size261
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.26e-12
EggNOG OGs2CMD4@1|root,2QQ0B@2759|Eukaryota,2XAK2@2836|Bacillariophyta
DescriptionSOUL heme-binding protein
Cds size261
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186110.342753-CDS-P-wetherbeei_contig1719:201..4621683186110.342753-CDS-P-wetherbeei_contig1719:201..462Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1719 202..462 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1719.1.1prot_P-wetherbeei_contig1719.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1719 202..462 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1719.1.1

>prot_P-wetherbeei_contig1719.1.1 ID=prot_P-wetherbeei_contig1719.1.1|Name=mRNA_P-wetherbeei_contig1719.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=87bp
LPTVIGRLGNEIPGLLLNPIQLPRFAATLADPRKLVEALAAAREEANNIF
ESMPADLYSPRYTVVEKKDGYEIRKYDGYAVATTPMA
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mRNA from alignment at P-wetherbeei_contig1719:202..462-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1719.1.1 ID=mRNA_P-wetherbeei_contig1719.1.1|Name=mRNA_P-wetherbeei_contig1719.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=261bp|location=Sequence derived from alignment at P-wetherbeei_contig1719:202..462- (Phaeothamnion wetherbeei SAG_119_79)
CTGCCGACCGTCATCGGCCGCCTCGGCAACGAGATCCCGGGCCTTCTCCT CAATCCCATCCAGCTGCCGCGCTTCGCCGCCACGCTCGCCGACCCCCGGA AGCTCGTCGAAGCACTGGCGGCGGCGCGCGAGGAGGCGAACAACATCTTC GAGAGTATGCCGGCGGATCTCTACTCGCCGCGGTACACTGTCGTGGAGAA GAAGGATGGTTACGAGATTAGAAAGTATGACGGCTACGCCGTCGCGACGA CGCCCATGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1719:202..462-

>mRNA_P-wetherbeei_contig1719.1.1 ID=mRNA_P-wetherbeei_contig1719.1.1|Name=mRNA_P-wetherbeei_contig1719.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=261bp|location=Sequence derived from alignment at P-wetherbeei_contig1719:202..462- (Phaeothamnion wetherbeei SAG_119_79)
CTGCCGACCGTCATCGGCCGCCTCGGCAACGAGATCCCGGGCCTTCTCCT
CAATCCCATCCAGCTGCCGCGCTTCGCCGCCACGCTCGCCGACCCCCGGA
AGCTCGTCGAAGCACTGGCGGCGGCGCGCGAGGAGGCGAACAACATCTTC
GAGAGTATGCCGGCGGATCTCTACTCGCCGCGGTACACTGTCGTGGAGAA
GAAGGATGGTTACGAGATTAGAAAGTATGACGGCTACGCCGTCGCGACGA
CGCCCATGGCC
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