mRNA_P-wetherbeei_contig17102.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17102.1.1
Unique NamemRNA_P-wetherbeei_contig17102.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17102.1.1 vs. uniprot
Match: D8LGF9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF9_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 3.710e-31
Identity = 59/91 (64.84%), Postives = 71/91 (78.02%), Query Frame = 1
Query:   13 YRITLANVASGSKILWAVVVFAYLFSWHALHLLRIEFRKFADLREDFLAYGDPDFLPQTRYSALVERVPAELRSNAALQAYFDRLFPGEVH 285
            Y +TLANV SGS  LW  VVFAYLF+WHAL++LR E + FA++RE+FL  GDPDF  QTRY+  VE VPAELRS  AL+AYF+ LFPG +H
Sbjct:  161 YYVTLANVPSGSNTLWVTVVFAYLFTWHALYVLRGEHQAFAEMREEFLTKGDPDFATQTRYTTKVENVPAELRSAVALEAYFEDLFPGCIH 251          
BLAST of mRNA_P-wetherbeei_contig17102.1.1 vs. uniprot
Match: A0A835ZAA7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAA7_9STRA)

HSP 1 Score: 113 bits (282), Expect = 4.170e-27
Identity = 52/94 (55.32%), Postives = 68/94 (72.34%), Query Frame = 1
Query:    1 ATDFYRITLANVASGSKILWAVVVFAYLFSWHALHLLRIEFRKFADLREDFLAYGDPDFLPQTRYSALVERVPAELRSNAALQAYFDRLFPGEV 282
            A  FY++T+ NV +G  +LWA  VFAYL + H L++L  E+  F+ LR+DFL YGDPD LPQ RYS +VE +P ELRS  +L AYFD +FPG+V
Sbjct:  119 AEGFYQLTMINVPNGGTMLWASTVFAYLLTAHVLYMLNKEYLLFSRLRQDFLCYGDPDLLPQARYSIMVELLPEELRSGISLHAYFDAMFPGQV 212          
BLAST of mRNA_P-wetherbeei_contig17102.1.1 vs. uniprot
Match: A0A6H5JF22_9PHAE (ERD protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF22_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 3.430e-21
Identity = 51/91 (56.04%), Postives = 64/91 (70.33%), Query Frame = 1
Query:   13 YRITLANVASGSKILWAVVVFAYLFSWHALHLLRIEFRKFADLREDFLAYGDPDFLPQTRYSALVERVPAELRSNAALQAYFDRLFPGEVH 285
            Y +TLANV SGS  LW  VVFAYLF+WHAL++LR E + FA++RE  + Y     L   R++  VE VPAELRS  AL+AYF+ LFPG +H
Sbjct:  163 YYLTLANVPSGSNTLWVTVVFAYLFTWHALYVLRGEHQAFAEMREARVPYQGGSGL---RHADPVENVPAELRSAVALEAYFEDLFPGCIH 250          
BLAST of mRNA_P-wetherbeei_contig17102.1.1 vs. uniprot
Match: A0A8J2X3Y5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X3Y5_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 4.420e-10
Identity = 38/88 (43.18%), Postives = 51/88 (57.95%), Query Frame = 1
Query:   22 TLANVASGSKILWAVVVFAYLFSWHALHLLRIEFRKFADLREDFLAYGD-PDFLPQTRYSALVERVPAELRSNAALQAYFDRLFPGEV 282
            T+  V      LWA V   +L + H L+ +  E   F  LR+ FL   +  +  PQ  YS +VERVP E R++AAL+AYF+ LFPGEV
Sbjct:  156 TVNVVVDNDWKLWAAVCAVWLVTLHTLYDVIQECEAFVKLRQQFLTKTEIMEDDPQATYSVMVERVPRECRADAALKAYFEHLFPGEV 243          
BLAST of mRNA_P-wetherbeei_contig17102.1.1 vs. uniprot
Match: A0A7S0B2V3_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0B2V3_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.300e-5
Identity = 32/101 (31.68%), Postives = 53/101 (52.48%), Query Frame = 1
Query:    4 TDFYRITLANVASGSKILWAVVVFAYLFSWHALHLLRIEFRKFADLREDFLAYGDP--------DFLPQTRYSALVERVPAELRSNAALQAYFDRLFPGEV 282
            T ++ IT+  + + +  L  V  +A  +    L  L +E+  F +LREDFLA GDP        + L Q R + +VE +PA  R +  +  +++ LFP +V
Sbjct:   29 TGYFSITINKLENRNNKLVVVWFYAIAYYLVVLRRLWVEWVIFCELREDFLANGDPSAIKEDDAESLKQFRNTCIVENIPASHRRDKDIFIFYNTLFPNQV 129          
BLAST of mRNA_P-wetherbeei_contig17102.1.1 vs. uniprot
Match: A0A4D9D4K0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D4K0_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 4.600e-5
Identity = 27/72 (37.50%), Postives = 40/72 (55.56%), Query Frame = 1
Query:   67 VVFAYLFSWHALHLLRIEFRKFADLREDFLAYGDPDFLPQTRYSALVERVPAELRSNAALQAYFDRLFPGEV 282
            V+ AY  +   L+LL  +++++  LR  F    DP       Y+ +V  +P  +RSN A+ AYFD LFPG V
Sbjct:  190 VLGAYYMTGVCLYLLWRQYQEYLSLRHAFRQRPDP-----ANYTIMVHHIPGSMRSNTAVSAYFDALFPGSV 256          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17102.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LGF9_ECTSI3.710e-3164.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZAA7_9STRA4.170e-2755.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JF22_9PHAE3.430e-2156.04ERD protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A8J2X3Y5_9STRA4.420e-1043.18Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S0B2V3_9STRA1.300e-531.68Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A4D9D4K0_9STRA4.600e-537.50Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17102contigP-wetherbeei_contig17102:311..831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LGF9
PFAMsPHM7_cyt,RSN1_7TM,RSN1_TM
Model size285
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons2
Evalue6.08e-32
EggNOG OGsCOG5594@1|root,KOG1134@2759|Eukaryota
Descriptionion transport
Cds size285
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186107.9983623-CDS-P-wetherbeei_contig17102:310..4461683186107.9983623-CDS-P-wetherbeei_contig17102:310..446Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17102 311..446 +
1683186108.0100546-CDS-P-wetherbeei_contig17102:682..8311683186108.0100546-CDS-P-wetherbeei_contig17102:682..831Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17102 683..831 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17102.1.1prot_P-wetherbeei_contig17102.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17102 311..831 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17102.1.1

>prot_P-wetherbeei_contig17102.1.1 ID=prot_P-wetherbeei_contig17102.1.1|Name=mRNA_P-wetherbeei_contig17102.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=95bp
ATDFYRITLANVASGSKILWAVVVFAYLFSWHALHLLRIEFRKFADLRED
FLAYGDPDFLPQTRYSALVERVPAELRSNAALQAYFDRLFPGEVH
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mRNA from alignment at P-wetherbeei_contig17102:311..831+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17102.1.1 ID=mRNA_P-wetherbeei_contig17102.1.1|Name=mRNA_P-wetherbeei_contig17102.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=521bp|location=Sequence derived from alignment at P-wetherbeei_contig17102:311..831+ (Phaeothamnion wetherbeei SAG_119_79)
GCGACGGACTTCTACCGCATCACGCTGGCCAACGTGGCGTCAGGGTCGAA GATCCTGTGGGCGGTCGTCGTGTTTGCGTACCTCTTCAGCTGGCACGCCC TCCACCTCCTACGAATCGAGTTCCGCAAGTTTGCAGGTTCGTTCGAGACG GGGAAGAGCAAGAAAGAACGGAGGAGAAAAGGAGCGGAGAAGAGTGGGAT GACGAGGAACGGAATGGTCTTCAATTTGGGTTAGGCGTATTCCGCGTTTT GTGTCGCTTTTTCTCATTTTTGATCGCCGCCGGGCACAACCATGGCCACC ACCATCCCAACCCTCGCTGCCGCCACCGCCGGCCTTACCGCCGTCGTCGC CGCGTCGGCTGCGGTCCTCCAGATCTCCGGGAGGACTTTCTGGCCTACGG TGACCCCGACTTCCTGCCGCAGACGCGATACTCGGCGCTGGTGGAGCGCG TGCCCGCGGAGCTCCGCAGCAACGCCGCATTGCAGGCCTACTTCGACCGC CTCTTCCCGGGGGAGGTCCAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17102:311..831+

>mRNA_P-wetherbeei_contig17102.1.1 ID=mRNA_P-wetherbeei_contig17102.1.1|Name=mRNA_P-wetherbeei_contig17102.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig17102:311..831+ (Phaeothamnion wetherbeei SAG_119_79)
GCGACGGACTTCTACCGCATCACGCTGGCCAACGTGGCGTCAGGGTCGAA
GATCCTGTGGGCGGTCGTCGTGTTTGCGTACCTCTTCAGCTGGCACGCCC
TCCACCTCCTACGAATCGAGTTCCGCAAGTTTGCAGATCTCCGGGAGGAC
TTTCTGGCCTACGGTGACCCCGACTTCCTGCCGCAGACGCGATACTCGGC
GCTGGTGGAGCGCGTGCCCGCGGAGCTCCGCAGCAACGCCGCATTGCAGG
CCTACTTCGACCGCCTCTTCCCGGGGGAGGTCCAC
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