mRNA_P-wetherbeei_contig17032.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17032.1.1
Unique NamemRNA_P-wetherbeei_contig17032.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17032.1.1 vs. uniprot
Match: A0A1G1HZJ7_9BACT (GH18 domain-containing protein n=1 Tax=Nitrospirae bacterium RBG_16_64_22 TaxID=1801708 RepID=A0A1G1HZJ7_9BACT)

HSP 1 Score: 107 bits (267), Expect = 1.690e-24
Identity = 61/179 (34.08%), Postives = 93/179 (51.96%), Query Frame = 1
Query:   37 IVILVLIMVAGLGWAGHTYYARWRLEQPLPADIDRHQNAIWMGHKWFGKTPPTEEIQATAQQLNRLGFKDIYFHVGPLDAKGEIPKWDHELWLQTLKQFRAQIPGMRAFAWVGGVTVNKFGKAPDTIDNALPEVRAGIVKTCQRVLKEGEFDGIHYDLEPIDRGDLNFISLCQETHKAI 573
            IV+    + AG+    +      R+++P P +     NAIW+ H+WF      +  QA  + L RLGF+ I+ HVGPL+  G IP +D +   + L   R   PG R  AW+GG      GK    +D A P+VR    + C+ +L  G FDGIH ++EP+  GD +F+   +   +A+
Sbjct:   22 IVLNAAFLGAGIATIAYFLVDPVRVDRPAPPNPGT--NAIWIQHQWFTGEKDEKAAQALGENLQRLGFRYIFAHVGPLNEHGGIPPYDPDQARRFLDGVRRSAPGTRTLAWLGGKNKAWGGK----VDLADPQVRLAAQERCRDLLALG-FDGIHLNIEPVADGDADFLGFLETIREAV 193          
BLAST of mRNA_P-wetherbeei_contig17032.1.1 vs. uniprot
Match: A0A367FR66_9ACTN (Uncharacterized protein n=1 Tax=Sphaerisporangium album TaxID=509200 RepID=A0A367FR66_9ACTN)

HSP 1 Score: 102 bits (253), Expect = 2.120e-22
Identity = 56/180 (31.11%), Postives = 89/180 (49.44%), Query Frame = 1
Query:   34 VIVILVLIMVAGLGWAGHTYYARWRLEQPLPADIDRHQNAIWMGHKWFGKTPPTEEIQATAQQLNRLGFKDIYFHVGPLDAKGEIPKWDHELWLQTLKQFRAQIPGMRAFAWVGGVTVNKFGKAPDTIDNALPEVRAGIVKTCQRVLKEGEFDGIHYDLEPIDRGDLNFISLCQETHKAI 573
            V+V+L+ + V  L  +G   Y  + L  P P  + R ++A W+GH W        ++ A A  L   G  D+Y H GP++  G +P   +      +   R  +PG+R  AW+G          P  +D +  + RA IV+T  +V+  G FDG+HY+ EP+D GDL  + +   T  A+
Sbjct:   36 VVVVLLSLPVLVLALSGIALYL-FSLGTPSPGAVTRGRDAAWLGHAWVDGRNGDPQVAALAAHLRGTGVSDLYVHTGPIEVDGTLPTSLYPRAGWAVGALRRALPGVRVHAWLGQRL------DPGMLDLSDAQTRANIVRTAGQVMAAG-FDGVHYNFEPLDSGDLGLLDVLDRTRAAL 207          
BLAST of mRNA_P-wetherbeei_contig17032.1.1 vs. uniprot
Match: UPI0019F02552 (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019F02552)

HSP 1 Score: 101 bits (252), Expect = 2.550e-22
Identity = 64/178 (35.96%), Postives = 91/178 (51.12%), Query Frame = 1
Query:   37 IVILVLIMVAGLGWAGHTYYA-RWRLEQPLPADIDRH--QNAIWMGHKWFGKTPPTEEIQATAQQLNRLGFKDIYFHVGPLDAKGEIPKWDHELWLQTLKQFRAQIPGMRAFAWVGGVTVNKFGKAPDTIDNALPEVRAGIVKTCQRVLKEGEFDGIHYDLEPIDRGDLNFISLCQET 561
            IV ++L+  AGLG A     A  W L +  P  +      NAIW+ HKW G++   +     A  L R    D+YFHVGPL  +G IP   +      +   R + P +R  AW+G   V + G  P  +D +    RA IV+T    +  G FDGIHY++EPI+ GD + ++L  ET
Sbjct:    5 IVRILLVFGAGLGVASLLLLAGAWMLYRYAPVSVPEPGGPNAIWVAHKWVGESHADDVYDRLAADLQRNRITDVYFHVGPLTGEGLIPLAKYPNAGTLIAAMRQRAPSIRLHAWIG--QVERRGGGP--LDLSDVGTRANIVRTAGDFIDLG-FDGIHYNIEPINSGDPDLLALLDET 177          
BLAST of mRNA_P-wetherbeei_contig17032.1.1 vs. uniprot
Match: A0A0G1DWP0_9BACT (GH18 domain-containing protein n=1 Tax=Candidatus Peregrinibacteria bacterium GW2011_GWF2_43_17 TaxID=1619068 RepID=A0A0G1DWP0_9BACT)

HSP 1 Score: 100 bits (249), Expect = 5.570e-22
Identity = 55/176 (31.25%), Postives = 87/176 (49.43%), Query Frame = 1
Query:   46 LVLIMVAGLGWAGHTYYARWRLEQPLPADIDRHQNAIWMGHKWFGKTPPTEEIQATAQQLNRLGFKDIYFHVGPLDAKGEIPKWDHELWLQTLKQFRAQIPGMRAFAWVGGVTVNKFGKAPDTIDNALPEVRAGIVKTCQRVLKEGEFDGIHYDLEPIDRGDLNFISLCQETHKAI 573
            LV + V  LGW    Y+           D +  +N IW+ H W G     + +   A +L +   K IY H GP D  G IP+  ++   + ++  + + P +   AWVG V           ++    E+RA IV+TC++++ E  F G+HYD+EPI   D  F++L +ET +AI
Sbjct:   14 LVAVTVLILGW----YFVVGPHGDLEGKDFNTGENGIWIQHAWVGNEQDPQAVYDLALKLQKYDIKYIYIHTGPFDTDGTIPEERYKFAKEFVQFLKEKNPDLIPLAWVGQVR--------SELEIESEEIRANIVETCEKLIIETGFAGLHYDIEPIPHDDEYFLTLLEETREAI 177          
BLAST of mRNA_P-wetherbeei_contig17032.1.1 vs. uniprot
Match: A0A561UNH2_9ACTN (Glycosyl hydrolase family 18 (Putative chitinase) n=1 Tax=Kitasatospora viridis TaxID=281105 RepID=A0A561UNH2_9ACTN)

HSP 1 Score: 97.8 bits (242), Expect = 7.220e-21
Identity = 61/179 (34.08%), Postives = 89/179 (49.72%), Query Frame = 1
Query:   31 AVIVILVLIMVAG-LGWAGHTYYARWRLEQPLPADIDRHQNAIWMGHKWF-GKTPPTEEIQATAQQLNRLGFKDIYFHVGPLDAKGEIPKWDHELWLQTLKQFRAQIPGMRAFAWVGGVTVNKFGKAPDTIDNALPEVRAGIVKTCQRVLKEGEFDGIHYDLEPIDRGDLNFISLCQET 561
            A +++L   + AG L WAG           P  +   R  +A W+GH W  G+  P +   A   QL R G +D+Y H GPL+  G +P   +    Q L     ++PG+R  AW+G V   +    PD +    P VRA +V + ++VL  G FDG+HYDLEP+  G   ++ L   T
Sbjct:   28 ATLLVLPPALAAGALWWAGQG--------DPAGSARTRGADAAWLGHAWVDGRKGPAD--LAALPQLVRGGVRDLYVHAGPLEHDGSLPADRYPAARQLLDAVHRELPGVRVQAWLGDVVAPEH---PDGMHLDDPAVRARVVASARQVLDAG-FDGVHYDLEPLQSGSAGYLDLLDAT 192          
BLAST of mRNA_P-wetherbeei_contig17032.1.1 vs. uniprot
Match: A0A5M3XUU5_9ACTN (Membrane protein n=3 Tax=Acrocarpospora TaxID=90974 RepID=A0A5M3XUU5_9ACTN)

HSP 1 Score: 97.4 bits (241), Expect = 8.070e-21
Identity = 63/183 (34.43%), Postives = 96/183 (52.46%), Query Frame = 1
Query:   31 AVIVILVLIMVA--GLGWAGHTYYARWRLEQPLPADIDRHQNAIWMGHKWFGKTPPTEEIQATAQQLNRLGFKDIYFHVGPLDAKGEIPKWDHELWLQTLKQFRAQIPGMRAFAWVGGVTVNKFGKAPDTIDNALPEVRAGIVKTCQRVLKEGEFDGIHYDLEPIDRGDLNFISLCQETHKAI 573
            AV + LVLI+ A   L +AG           P P       +A+W+GH W        ++   A +L  +  KD+Y H GPLDA G +P   +      L  ++A++PG+R  AW+G  TVN   +    ++ A    RA +V   + ++  G FDGIHYD EP+D GD ++++L +ET +AI
Sbjct:   15 AVPLTLVLIVAAMLRLDYAG----------TPAPWAKSTGNDALWLGHAWVDGRRTAADVNILASRLGSM--KDVYVHSGPLDANGTLPAAKYPNAANLLTWWKARLPGVRISAWLGQ-TVNPDDEGH--LNLADQATRARVVAGAKTLVDLG-FDGIHYDFEPVDDGDADYLALMRETRQAI 181          
BLAST of mRNA_P-wetherbeei_contig17032.1.1 vs. uniprot
Match: A0A4R7THF6_9ACTN (Uncharacterized protein n=2 Tax=Kribbella TaxID=182639 RepID=A0A4R7THF6_9ACTN)

HSP 1 Score: 93.6 bits (231), Expect = 2.470e-19
Identity = 52/153 (33.99%), Postives = 76/153 (49.67%), Query Frame = 1
Query:  115 QPLPADIDRHQNAIWMGHKWFGKTPPTEEIQATAQQLNRLGFKDIYFHVGPLDAKGEIPKWD---HELWLQTLKQFRAQIPGMRAFAWVGGVTVNKFGKAPDTIDNALPEVRAGIVKTCQRVLKEGEFDGIHYDLEPIDRGDLNFISLCQETH 564
            +P      R Q+A+W+GH W        +I A A+QL   G +D+Y H GPL+  G +P         W   L      +P +R  AW+G V + +     D  D A   VR  +  +  +VL EG FDGIH+DLEP+  G  +F++L  + H
Sbjct:   44 EPSSEARTRGQDALWLGHAWVDGRKTQADITALAKQLEGTGIRDLYVHTGPLEHDGSLPLATVAPKATWF--LDAVHRAMPNVRVQAWLGDVVLPQKNPGMDLDDAA---VRDRVTASSSQVLDEG-FDGIHFDLEPLQSGSESFLALLDQVH 190          
BLAST of mRNA_P-wetherbeei_contig17032.1.1 vs. uniprot
Match: A0A7Y0B3W2_9ACTN (Uncharacterized protein n=7 Tax=Streptomyces TaxID=1883 RepID=A0A7Y0B3W2_9ACTN)

HSP 1 Score: 93.2 bits (230), Expect = 2.970e-19
Identity = 46/140 (32.86%), Postives = 72/140 (51.43%), Query Frame = 1
Query:  139 RHQNAIWMGHKWFGKTPPTEEIQATAQQLNRLGFKDIYFHVGPLDAKGEIPKWDHELWLQTLKQFRAQIPGMRAFAWVGGVTVNKFGKAPDTIDNALPEVRAGIVKTCQRVLKEGEFDGIHYDLEPIDRGDLNFISLCQE 558
            R ++A W+GH W        +++  A++L   G KD+Y H GPL+  G +P   H             +PG+R  AW+G V  N     P  +  A P  RA +  + ++VL  G FDG+H+DLEP+  GD +++ L  +
Sbjct:   42 RGRDAYWIGHAWVDGRKKDADLKVLAERLKGTGIKDLYVHAGPLEHDGTLPAARHPRARWLTDGIHRVLPGIRVQAWLGDVLAND---GPVGLRLADPASRAAVTASARQVLDAG-FDGVHFDLEPLQSGDPDYLKLLDD 177          
BLAST of mRNA_P-wetherbeei_contig17032.1.1 vs. uniprot
Match: UPI0019B8FF9A (hypothetical protein n=1 Tax=Streptomyces omiyaensis TaxID=68247 RepID=UPI0019B8FF9A)

HSP 1 Score: 90.9 bits (224), Expect = 2.370e-18
Identity = 44/143 (30.77%), Postives = 76/143 (53.15%), Query Frame = 1
Query:  139 RHQNAIWMGHKWFGKTPPTEEIQATAQQLNRLGFKDIYFHVGPLDAKGEIPKWDHELWLQTLKQFRAQIPGMRAFAWVGGVTVNKFGKAPDTIDNALPEVRAGIVKTCQRVLKEGEFDGIHYDLEPIDRGDLNFISLCQETHK 567
            R ++A W+GH W        ++QA A++L   G +D+Y H GPL+  G +P   H             +PG+R  AW+G V  ++    P+ +  +    R  +V + ++VL  G FDG+H+DLEP+  GD ++++L  +  +
Sbjct:   49 RGKDAYWIGHAWVDGRKKDADLQALAERLKGTGIRDLYVHAGPLEHDGTLPADRHPRARWLTDGVHRVLPGVRVQAWLGDVLADE---GPNGLWLSDAASRTAVVASARQVLGAG-FDGVHFDLEPLQSGDADYLTLLDDLRR 187          
BLAST of mRNA_P-wetherbeei_contig17032.1.1 vs. uniprot
Match: A0A4U3MKB6_9ACTN (Uncharacterized protein n=6 Tax=Herbidospora TaxID=28443 RepID=A0A4U3MKB6_9ACTN)

HSP 1 Score: 89.4 bits (220), Expect = 8.000e-18
Identity = 49/155 (31.61%), Postives = 80/155 (51.61%), Query Frame = 1
Query:  109 LEQPLPADIDRHQNAIWMGHKWFGKTPPTEEIQATAQQLNRLGFKDIYFHVGPLDAKGEIPKWDHELWLQTLKQFRAQIPGMRAFAWVGGVTVNKFGKAPDTIDNALPEVRAGIVKTCQRVLKEGEFDGIHYDLEPIDRGDLNFISLCQETHKAI 573
            L  P PA      +A+WMGH W       ++++A   +L  +  +D++ H GP  A G +    H      L   R  +PG+R   W+G  TVN+  +    +D+  P  RA I+   + ++  G +DG+HY+ EP+  GD  ++SL +ET +AI
Sbjct:   37 LGTPSPAARSAGTDALWMGHMWVDGRRTEKDLEALKPRLTHM--RDVFVHSGPYGADGRLDPNLHPKSRDFLAWARTHLPGVRVLPWLGQ-TVNEDDEGHLDLDD--PATRANIIAGAREIVALG-YDGVHYNFEPVLDGDAAYLSLLEETRRAI 185          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17032.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A1G1HZJ7_9BACT1.690e-2434.08GH18 domain-containing protein n=1 Tax=Nitrospirae... [more]
A0A367FR66_9ACTN2.120e-2231.11Uncharacterized protein n=1 Tax=Sphaerisporangium ... [more]
UPI0019F025522.550e-2235.96Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]
A0A0G1DWP0_9BACT5.570e-2231.25GH18 domain-containing protein n=1 Tax=Candidatus ... [more]
A0A561UNH2_9ACTN7.220e-2134.08Glycosyl hydrolase family 18 (Putative chitinase) ... [more]
A0A5M3XUU5_9ACTN8.070e-2134.43Membrane protein n=3 Tax=Acrocarpospora TaxID=9097... [more]
A0A4R7THF6_9ACTN2.470e-1933.99Uncharacterized protein n=2 Tax=Kribbella TaxID=18... [more]
A0A7Y0B3W2_9ACTN2.970e-1932.86Uncharacterized protein n=7 Tax=Streptomyces TaxID... [more]
UPI0019B8FF9A2.370e-1830.77hypothetical protein n=1 Tax=Streptomyces omiyaens... [more]
A0A4U3MKB6_9ACTN8.000e-1831.61Uncharacterized protein n=6 Tax=Herbidospora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17032contigP-wetherbeei_contig17032:10..582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog68194.JNXR01000007_gene4001
PFAMsGlyco_hydro_18
Model size573
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue3.71e-24
EggNOG OGsCOG3858@1|root,COG3858@2|Bacteria,2GM95@201174|Actinobacteria
DescriptionInteracts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
Cds size573
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186105.6806595-CDS-P-wetherbeei_contig17032:9..5821683186105.6806595-CDS-P-wetherbeei_contig17032:9..582Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17032 10..582 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17032.1.1prot_P-wetherbeei_contig17032.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17032 10..582 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17032.1.1

>prot_P-wetherbeei_contig17032.1.1 ID=prot_P-wetherbeei_contig17032.1.1|Name=mRNA_P-wetherbeei_contig17032.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=191bp
RTRIREDVKRAVIVILVLIMVAGLGWAGHTYYARWRLEQPLPADIDRHQN
AIWMGHKWFGKTPPTEEIQATAQQLNRLGFKDIYFHVGPLDAKGEIPKWD
HELWLQTLKQFRAQIPGMRAFAWVGGVTVNKFGKAPDTIDNALPEVRAGI
VKTCQRVLKEGEFDGIHYDLEPIDRGDLNFISLCQETHKAI
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mRNA from alignment at P-wetherbeei_contig17032:10..582-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17032.1.1 ID=mRNA_P-wetherbeei_contig17032.1.1|Name=mRNA_P-wetherbeei_contig17032.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=573bp|location=Sequence derived from alignment at P-wetherbeei_contig17032:10..582- (Phaeothamnion wetherbeei SAG_119_79)
AGAACGCGAATCCGGGAAGACGTGAAGCGCGCCGTCATAGTAATCCTCGT GCTCATCATGGTCGCAGGGCTGGGATGGGCCGGCCACACCTACTACGCAC GCTGGCGGCTCGAACAGCCCTTGCCCGCCGATATCGACCGGCATCAGAAC GCCATCTGGATGGGCCATAAATGGTTCGGCAAGACGCCCCCAACCGAGGA GATTCAGGCGACGGCCCAGCAGCTAAATCGCCTCGGGTTCAAGGACATCT ACTTCCACGTGGGTCCCCTGGACGCCAAGGGGGAGATTCCCAAGTGGGAT CACGAGCTCTGGTTGCAGACGCTCAAGCAGTTCCGCGCGCAGATCCCCGG GATGCGGGCGTTCGCCTGGGTGGGCGGAGTGACCGTCAACAAGTTCGGGA AAGCTCCCGACACCATCGACAACGCTCTTCCTGAGGTCCGGGCCGGGATC GTCAAGACCTGCCAAAGAGTCCTCAAAGAGGGCGAGTTCGACGGTATCCA CTACGATCTCGAGCCCATCGACCGCGGCGACCTCAACTTCATCTCGCTCT GCCAGGAGACTCACAAAGCGATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17032:10..582-

>mRNA_P-wetherbeei_contig17032.1.1 ID=mRNA_P-wetherbeei_contig17032.1.1|Name=mRNA_P-wetherbeei_contig17032.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=573bp|location=Sequence derived from alignment at P-wetherbeei_contig17032:10..582- (Phaeothamnion wetherbeei SAG_119_79)
AGAACGCGAATCCGGGAAGACGTGAAGCGCGCCGTCATAGTAATCCTCGT
GCTCATCATGGTCGCAGGGCTGGGATGGGCCGGCCACACCTACTACGCAC
GCTGGCGGCTCGAACAGCCCTTGCCCGCCGATATCGACCGGCATCAGAAC
GCCATCTGGATGGGCCATAAATGGTTCGGCAAGACGCCCCCAACCGAGGA
GATTCAGGCGACGGCCCAGCAGCTAAATCGCCTCGGGTTCAAGGACATCT
ACTTCCACGTGGGTCCCCTGGACGCCAAGGGGGAGATTCCCAAGTGGGAT
CACGAGCTCTGGTTGCAGACGCTCAAGCAGTTCCGCGCGCAGATCCCCGG
GATGCGGGCGTTCGCCTGGGTGGGCGGAGTGACCGTCAACAAGTTCGGGA
AAGCTCCCGACACCATCGACAACGCTCTTCCTGAGGTCCGGGCCGGGATC
GTCAAGACCTGCCAAAGAGTCCTCAAAGAGGGCGAGTTCGACGGTATCCA
CTACGATCTCGAGCCCATCGACCGCGGCGACCTCAACTTCATCTCGCTCT
GCCAGGAGACTCACAAAGCGATC
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