mRNA_P-wetherbeei_contig16988.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16988.1.1
Unique NamemRNA_P-wetherbeei_contig16988.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16988.1.1 vs. uniprot
Match: A0A7X9AEJ5_9BURK (NADH-quinone oxidoreductase n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X9AEJ5_9BURK)

HSP 1 Score: 159 bits (401), Expect = 5.820e-48
Identity = 67/100 (67.00%), Postives = 79/100 (79.00%), Query Frame = 1
Query:    4 DFSTCTDHPPVTMDIIYYVFSNEHKHRLGIKIHLPRENPIIPTVAHLWRNADWNEREIYDLFGVFFVGHPDQRRLMMPDDWEGHPLRKDYMHPNVVTRPD 303
            +FST  D PP  + ++Y ++S  H+HRL +K+ LPR  P IPTV+HLW NADWNEREIYDLFGVFF GH D RRLMMP+DWEGHPLRKDY HPN+  RPD
Sbjct:   55 EFSTAVDRPPDRLCVVYSLYSYTHRHRLMLKVDLPRYAPTIPTVSHLWENADWNEREIYDLFGVFFSGHEDLRRLMMPEDWEGHPLRKDYNHPNLTPRPD 154          
BLAST of mRNA_P-wetherbeei_contig16988.1.1 vs. uniprot
Match: A0A7Z9UD75_9BACT (NADH-quinone oxidoreductase n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9UD75_9BACT)

HSP 1 Score: 147 bits (370), Expect = 3.210e-43
Identity = 62/100 (62.00%), Postives = 76/100 (76.00%), Query Frame = 1
Query:    4 DFSTCTDHPPVTMDIIYYVFSNEHKHRLGIKIHLPRENPIIPTVAHLWRNADWNEREIYDLFGVFFVGHPDQRRLMMPDDWEGHPLRKDYMHPNVVTRPD 303
            +F TC DHPP  +  + Y+ S  H HR+ +KI+L R  P +P++A L+ NADWNEREI+DLFGV F  HPD RRLMMP+DW GHPLRKDY+HPNVV RPD
Sbjct:   57 EFETCADHPPDLLAFVCYLRSLGHGHRIALKINLDRNQPSLPSLADLYANADWNEREIFDLFGVIFHNHPDLRRLMMPEDWTGHPLRKDYLHPNVVKRPD 156          
BLAST of mRNA_P-wetherbeei_contig16988.1.1 vs. uniprot
Match: A0A1V5PLZ6_9BACT (NADH-quinone oxidoreductase subunit C n=1 Tax=bacterium ADurb.Bin363 TaxID=1866927 RepID=A0A1V5PLZ6_9BACT)

HSP 1 Score: 124 bits (311), Expect = 3.800e-34
Identity = 49/94 (52.13%), Postives = 72/94 (76.60%), Query Frame = 1
Query:   22 DHPPVTMDIIYYVFSNEHKHRLGIKIHLPRENPIIPTVAHLWRNADWNEREIYDLFGVFFVGHPDQRRLMMPDDWEGHPLRKDYMHPNVVTRPD 303
            D+PP  ++++Y++FS E +HRL +K  LPREN +I +V  LW+ A+W+EREI+DL GV F GH D RR+++P+D+ GHPL+KD+ HP V+  PD
Sbjct:   61 DYPPEKIELVYHLFSIEQRHRLCVKTELPRENSVINSVVSLWKAAEWHEREIFDLLGVKFEGHTDLRRILLPEDFTGHPLKKDFSHPEVIPSPD 154          
BLAST of mRNA_P-wetherbeei_contig16988.1.1 vs. uniprot
Match: A0A3M1R126_9BACT (NADH-quinone oxidoreductase subunit C n=1 Tax=Nitrospinae bacterium TaxID=2026769 RepID=A0A3M1R126_9BACT)

HSP 1 Score: 123 bits (309), Expect = 1.130e-33
Identity = 45/79 (56.96%), Postives = 66/79 (83.54%), Query Frame = 1
Query:   40 MDIIYYVFSNEHKHRLGIKIHLPRENPIIPTVAHLWRNADWNEREIYDLFGVFFVGHPDQRRLMMPDDWEGHPLRKDYM 276
            + ++Y++ S   +H++ +K+ LPR+NP++P+VAH+WR ADW+ERE YDLFG+ F  HPD RR+++PDDWEGHPLRKDY+
Sbjct:   67 LGVVYHLNSTVFRHKITLKVDLPRDNPVLPSVAHVWRTADWHEREAYDLFGIVFENHPDLRRILLPDDWEGHPLRKDYV 145          
BLAST of mRNA_P-wetherbeei_contig16988.1.1 vs. uniprot
Match: A0A7V4HC89_9BACT (NADH-quinone oxidoreductase subunit C n=1 Tax=Ignavibacteria bacterium TaxID=2053306 RepID=A0A7V4HC89_9BACT)

HSP 1 Score: 122 bits (306), Expect = 1.830e-33
Identity = 50/94 (53.19%), Postives = 69/94 (73.40%), Query Frame = 1
Query:    1 FDFSTC---TDHPPVTMDIIYYVFSNEHKHRLGIKIHLPRENPIIPTVAHLWRNADWNEREIYDLFGVFFVGHPDQRRLMMPDDWEGHPLRKDY 273
            FD+  C    D+    +  +Y ++S  HKHR+ IKI +  +NP IPTV+ +W  A+W+ERE+YD+FG+ F+GHPD RR++MPDDWEGHPLRKDY
Sbjct:   53 FDYLMCLSGVDYGKGVLGTVYNIYSMTHKHRVNIKIEVNSDNPEIPTVSDIWPTANWHEREVYDMFGIKFIGHPDLRRILMPDDWEGHPLRKDY 146          
BLAST of mRNA_P-wetherbeei_contig16988.1.1 vs. uniprot
Match: A0A7V0M1A0_9BACT (NADH-quinone oxidoreductase subunit C n=3 Tax=Bacteria TaxID=2 RepID=A0A7V0M1A0_9BACT)

HSP 1 Score: 122 bits (305), Expect = 3.360e-33
Identity = 45/78 (57.69%), Postives = 65/78 (83.33%), Query Frame = 1
Query:   49 IYYVFSNEHKHRLGIKIHLPRENPIIPTVAHLWRNADWNEREIYDLFGVFFVGHPDQRRLMMPDDWEGHPLRKDYMHP 282
            +Y+ +S +H H++ +K+ +PRENP IP++  LWR ADW+ERE+YDLFG+ F+ HPD RRL++P+DWEG+PLRKDY+ P
Sbjct:   70 VYHFYSMKHAHKIILKVEVPRENPAIPSICDLWRTADWHEREVYDLFGIVFLNHPDLRRLLLPEDWEGYPLRKDYVTP 147          
BLAST of mRNA_P-wetherbeei_contig16988.1.1 vs. uniprot
Match: A0A2E0XGJ0_9BACT (NADH-quinone oxidoreductase subunit C n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A2E0XGJ0_9BACT)

HSP 1 Score: 121 bits (304), Expect = 3.900e-33
Identity = 45/84 (53.57%), Postives = 68/84 (80.95%), Query Frame = 1
Query:   37 TMDIIYYVFSNEHKHRLGIKIHLPRENPIIPTVAHLWRNADWNEREIYDLFGVFFVGHPDQRRLMMPDDWEGHPLRKDYMHPNV 288
            TM+I+Y++FS  H+H+L +K+ +P+  P +PTV H+W+ A+W+ERE+YDL+GV F GH D RR+++PDDWEG+P+RKDY  P +
Sbjct:   70 TMEIVYHLFSMTHQHKLTLKVIVPKVEPHVPTVEHVWKVANWHEREVYDLYGVMFDGHSDLRRILLPDDWEGYPMRKDYKEPEI 153          
BLAST of mRNA_P-wetherbeei_contig16988.1.1 vs. uniprot
Match: A0A1F6CA66_HANXR (NADH-quinone oxidoreductase subunit C n=1 Tax=Handelsmanbacteria sp. (strain RIFCSPLOWO2_12_FULL_64_10) TaxID=1817868 RepID=A0A1F6CA66_HANXR)

HSP 1 Score: 120 bits (302), Expect = 7.200e-33
Identity = 46/84 (54.76%), Postives = 64/84 (76.19%), Query Frame = 1
Query:   22 DHPPVTMDIIYYVFSNEHKHRLGIKIHLPRENPIIPTVAHLWRNADWNEREIYDLFGVFFVGHPDQRRLMMPDDWEGHPLRKDY 273
            D P   + + Y+V+S  H+HR+ +K+ +PRENP +PTV H+W+ A+W+ERE YD+ G+ F GH D RR++ PDDWEGHPLRKDY
Sbjct:   62 DDPSGDLVVAYHVYSMAHRHRIALKVFVPRENPAVPTVEHVWKIANWHEREAYDMMGIVFEGHSDLRRILCPDDWEGHPLRKDY 145          
BLAST of mRNA_P-wetherbeei_contig16988.1.1 vs. uniprot
Match: A0A2H5W4L5_9BACT (NADH-quinone oxidoreductase n=1 Tax=bacterium HR11 TaxID=2035406 RepID=A0A2H5W4L5_9BACT)

HSP 1 Score: 119 bits (299), Expect = 1.060e-32
Identity = 42/78 (53.85%), Postives = 66/78 (84.62%), Query Frame = 1
Query:   40 MDIIYYVFSNEHKHRLGIKIHLPRENPIIPTVAHLWRNADWNEREIYDLFGVFFVGHPDQRRLMMPDDWEGHPLRKDY 273
            ++++Y++FS  H+HR+ +K+ +PR++P +PTV+ +WR A+W+ERE YDL G+ F GHPD RR+++P+DWEG+PLRKDY
Sbjct:   14 IEVVYHLFSFRHRHRIALKVRVPRDDPRVPTVSDIWRTAEWHEREAYDLLGIVFEGHPDLRRILLPEDWEGYPLRKDY 91          
BLAST of mRNA_P-wetherbeei_contig16988.1.1 vs. uniprot
Match: A0A419FBZ8_9BACT (NADH-quinone oxidoreductase subunit C n=1 Tax=candidate division Zixibacteria bacterium TaxID=2053527 RepID=A0A419FBZ8_9BACT)

HSP 1 Score: 120 bits (300), Expect = 1.580e-32
Identity = 49/95 (51.58%), Postives = 69/95 (72.63%), Query Frame = 1
Query:   31 PVTMDIIYYVFSNEHKHRLGIKIHLPRENPIIPTVAHLWRNADWNEREIYDLFGVFFVGHPDQRRLMMPDDWEGHPLRKDYMHPNV-----VTRP 300
            P +++++Y +FS +H H++ +K   P+++P IPTV+ LW  ADW+ERE YDL G+ F GHPD RR+++PDDWEGHPLRKDY  P +     VT P
Sbjct:   62 PDSLEVVYNLFSFKHLHKVTLKTRCPKDDPAIPTVSPLWPTADWHEREAYDLIGIQFTGHPDLRRILLPDDWEGHPLRKDYQAPALWHDIPVTNP 156          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16988.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X9AEJ5_9BURK5.820e-4867.00NADH-quinone oxidoreductase n=1 Tax=Burkholderiale... [more]
A0A7Z9UD75_9BACT3.210e-4362.00NADH-quinone oxidoreductase n=1 Tax=Phycisphaerale... [more]
A0A1V5PLZ6_9BACT3.800e-3452.13NADH-quinone oxidoreductase subunit C n=1 Tax=bact... [more]
A0A3M1R126_9BACT1.130e-3356.96NADH-quinone oxidoreductase subunit C n=1 Tax=Nitr... [more]
A0A7V4HC89_9BACT1.830e-3353.19NADH-quinone oxidoreductase subunit C n=1 Tax=Igna... [more]
A0A7V0M1A0_9BACT3.360e-3357.69NADH-quinone oxidoreductase subunit C n=3 Tax=Bact... [more]
A0A2E0XGJ0_9BACT3.900e-3353.57NADH-quinone oxidoreductase subunit C n=1 Tax=Cand... [more]
A0A1F6CA66_HANXR7.200e-3354.76NADH-quinone oxidoreductase subunit C n=1 Tax=Hand... [more]
A0A2H5W4L5_9BACT1.060e-3253.85NADH-quinone oxidoreductase n=1 Tax=bacterium HR11... [more]
A0A419FBZ8_9BACT1.580e-3251.58NADH-quinone oxidoreductase subunit C n=1 Tax=cand... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16988contigP-wetherbeei_contig16988:62..367 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog290397.Adeh_2573
Preferred namenuoC
PFAMsComplex1_30kDa
Model size306
Max annot lvl28221|Deltaproteobacteria
KEGG rclassRC00061
KEGG koko:K00332
KEGG TC3.D.1
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,map00190,map01100
KEGG ModuleM00144
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.5e-30
EggNOG OGsCOG0852@1|root,COG0852@2|Bacteria,1MX4B@1224|Proteobacteria,42NAR@68525|delta/epsilon subdivisions,2WQB1@28221|Deltaproteobacteria,2Z1BP@29|Myxococcales
EC1.6.5.3
DescriptionNDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
Cds size306
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186103.9722016-CDS-P-wetherbeei_contig16988:61..3671683186103.9722016-CDS-P-wetherbeei_contig16988:61..367Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16988 62..367 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16988.1.1prot_P-wetherbeei_contig16988.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16988 62..367 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16988.1.1

>prot_P-wetherbeei_contig16988.1.1 ID=prot_P-wetherbeei_contig16988.1.1|Name=mRNA_P-wetherbeei_contig16988.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=102bp
FDFSTCTDHPPVTMDIIYYVFSNEHKHRLGIKIHLPRENPIIPTVAHLWR
NADWNEREIYDLFGVFFVGHPDQRRLMMPDDWEGHPLRKDYMHPNVVTRP
D*
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mRNA from alignment at P-wetherbeei_contig16988:62..367+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16988.1.1 ID=mRNA_P-wetherbeei_contig16988.1.1|Name=mRNA_P-wetherbeei_contig16988.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=306bp|location=Sequence derived from alignment at P-wetherbeei_contig16988:62..367+ (Phaeothamnion wetherbeei SAG_119_79)
TTCGATTTCAGCACGTGCACCGATCATCCGCCGGTCACGATGGACATCAT CTACTACGTGTTTTCTAACGAGCACAAGCACCGTCTGGGGATCAAGATAC ACTTGCCTCGAGAAAATCCCATTATTCCCACCGTGGCCCACCTGTGGCGC AACGCCGATTGGAACGAGCGCGAGATCTACGATCTTTTCGGTGTGTTCTT TGTCGGTCACCCTGATCAAAGACGCTTGATGATGCCTGACGATTGGGAAG GCCACCCGCTCCGCAAAGATTACATGCATCCCAACGTGGTCACCCGACCC GACTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16988:62..367+

>mRNA_P-wetherbeei_contig16988.1.1 ID=mRNA_P-wetherbeei_contig16988.1.1|Name=mRNA_P-wetherbeei_contig16988.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=306bp|location=Sequence derived from alignment at P-wetherbeei_contig16988:62..367+ (Phaeothamnion wetherbeei SAG_119_79)
TTCGATTTCAGCACGTGCACCGATCATCCGCCGGTCACGATGGACATCAT
CTACTACGTGTTTTCTAACGAGCACAAGCACCGTCTGGGGATCAAGATAC
ACTTGCCTCGAGAAAATCCCATTATTCCCACCGTGGCCCACCTGTGGCGC
AACGCCGATTGGAACGAGCGCGAGATCTACGATCTTTTCGGTGTGTTCTT
TGTCGGTCACCCTGATCAAAGACGCTTGATGATGCCTGACGATTGGGAAG
GCCACCCGCTCCGCAAAGATTACATGCATCCCAACGTGGTCACCCGACCC
GACTAA
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