mRNA_P-wetherbeei_contig16887.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16887.1.1
Unique NamemRNA_P-wetherbeei_contig16887.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16887.1.1 vs. uniprot
Match: A0A6H5KTJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTJ5_9PHAE)

HSP 1 Score: 210 bits (535), Expect = 4.210e-57
Identity = 119/267 (44.57%), Postives = 150/267 (56.18%), Query Frame = 1
Query:  511 HVEVSDCLLALGSDGDKERHG----GGFRRAGRWLGQGLRSGHLPDLSLEHVSLLPVGSLLEFGRFPTYYDCSRKKALVRAASVPPGARVLALSHPWESPGNPDPSGHQFEALRRFL--------------LGSKAVGGTRPR--FDYVWLLFSCASQNRIKPDFKLHLRNVVTAYCRADRVLVVPKLEVRPKDGTYFSDLTEYSTRGWCAAEFLCALRLSVPLT-----------------LSLRHGAAGSGGGNGGDVDDGNDLP 1200
            + EV+D L     +G +ERH      GF RAGRW+      G L +L+LE+V LLPV  LL+ GRFP++YD SRKK LV A+ + P ++VL ++HPWESPGNPDPSG QF ALRRFL               G  A GG      F YVWL FSC S NR++P F+ HL NV+TA+C  D  LV+P+   R  +G  ++D+  Y  RGWC  E LCAL L VP T                 LS      G GGG G +++  N LP
Sbjct:  242 NTEVADYLREALPEGHRERHRCKRRRGFERAGRWMRLARAGGFLQNLALENVYLLPVSVLLDVGRFPSHYDASRKKQLVAASDISPQSQVLLVTHPWESPGNPDPSGKQFSALRRFLDEKATAGSADGGKGRGGSAEGGDSADEGFGYVWLSFSCTSSNRMRPAFQTHLDNVLTAWCFCDHALVLPETVTRAAEGFAYTDVEGYVERGWCCVELLCALHLEVPTTIHVALKDALSEAVTNCQLSSPQRRGGEGGGGGAEIEPDN-LP 507          
BLAST of mRNA_P-wetherbeei_contig16887.1.1 vs. uniprot
Match: D7FGT9_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGT9_ECTSI)

HSP 1 Score: 209 bits (532), Expect = 3.670e-56
Identity = 107/229 (46.72%), Postives = 143/229 (62.45%), Query Frame = 1
Query:  511 HVEVSDCLLALGSDGDKERHG----GGFRRAGRWLGQGLRSGHLPDLSLEHVSLLPVGSLLEFGRFPTYYDCSRKKALVRAASVPPGARVLALSHPWESPGNPDPSGHQFEALRRFLLGSKAVGGTRPR-----------------FDYVWLLFSCASQNRIKPDFKLHLRNVVTAYCRADRVLVVPKLEVRPKDGTYFSDLTEYSTRGWCAAEFLCALRLSVPLTLSL 1134
            + +V+D L     +G +ERH      GF RAGRW+      G L +L+LE+V LLPV  LL+ GRFP++YD SR+K LV A+ + P ++VL ++HPWESPGNPDPSG QF ALRRFL G KA+GG+                    F YVWL FSC S NR++P F+ HL NV+TA+C  D  LV+P+   R  +G  ++D+  Y  RGWC  + LCAL L VP+T+ +
Sbjct:  496 NTDVADYLREALPEGHRERHRCKRRRGFERAGRWMRLARAEGFLQNLALENVYLLPVSVLLDVGRFPSHYDASRRKQLVAASDISPQSQVLLVTHPWESPGNPDPSGKQFSALRRFLEG-KAMGGSTDGGEXXXXXXXXXDSADEGFGYVWLSFSCTSSNRMRPAFQTHLDNVLTAWCFCDHALVLPETVTRAAEGFTYTDVEGYVERGWCCVKLLCALHLDVPMTMHV 723          
BLAST of mRNA_P-wetherbeei_contig16887.1.1 vs. uniprot
Match: A0A7S3XYW2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYW2_HETAK)

HSP 1 Score: 102 bits (253), Expect = 1.830e-21
Identity = 72/192 (37.50%), Postives = 95/192 (49.48%), Query Frame = 1
Query:  574 GGFRRAGRWLGQGLRSGHLPDLSLEHVSLLPVGSLLEFGRFPTYYDCSRKKALVRAASV--PPGARVLALSHPWESPGNPDPSGHQFEALRRFLLGSKAVGGTRPRFDYVWLLFSCASQNRIKPDFKLHLRNVVTAYCRADRVLVVPKLE-VRPKDGTYFSDLTEYSTRGWCAAEFLCALRLSVPLTLSLRH 1140
            GG RR GR   Q  +  ++P+LSL+HV LLP G+L + GR   +  C  KKAL  A  V     ARVL +SH W+  G PD    Q++ + RFL     +G T     ++W+ ++C  Q        L  RNV TA   AD  LVVP+ E +     T   DL  Y  R WC AE + A     P+ L   H
Sbjct:   20 GGGRRDGRAFVQRAQQ-YVPELSLDHVHLLPAGALRQLGRLAKFELC--KKALRSARKVFRDRAARVLFVSHRWQGEGRPDEHNLQYDTILRFLDSRPDLGIT-----HIWIDYACLPQRHTSAGATLR-RNVATALFAADVFLVVPRFEDIATAPHT---DLAGYCARAWCQAELVVARARGAPVYLFCFH 199          
BLAST of mRNA_P-wetherbeei_contig16887.1.1 vs. uniprot
Match: A0A7S4DDY8_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDY8_HETAK)

HSP 1 Score: 88.2 bits (217), Expect = 1.970e-16
Identity = 53/161 (32.92%), Postives = 84/161 (52.17%), Query Frame = 1
Query:  691 RFPTYYDCSRKKALVRAASVPPGARVLALSHPWESPGN---PDPSGHQFEALRRFLLGSKAVGGTRPRFDYVWLLFSCASQNRIKPD----FKLHLRNVVTAYCRADRVLVVPKLEVRPKDG--TYFSDLTEYSTRGWCAAEFLCALRLSVPLTLSLRHGA 1146
            R P Y +C+ +   V    +    +V  +SH W+   N    D +  Q++ +  +LLGS+          YVWL  +C +Q+R +P+    F + L N+ TA   +  VLVVP+L+ +  DG   Y+SDL EY+ RGWC  E L A+ +   + ++L  GA
Sbjct:    3 RMPLYEECAERGQHVPIEHLAATDKVAFISHRWQDAANNLADDAACSQYQVIMAYLLGSEEGQSVA----YVWLDLACINQDRSRPESLKEFYIKLDNIGTAIACSHTVLVVPRLKQQQVDGHCLYYSDLEEYTKRGWCLLEILSAIEMRCLIRVALVCGA 159          
BLAST of mRNA_P-wetherbeei_contig16887.1.1 vs. uniprot
Match: A0A6V1VGB7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VGB7_HETAK)

HSP 1 Score: 79.7 bits (195), Expect = 2.140e-12
Identity = 56/179 (31.28%), Postives = 83/179 (46.37%), Query Frame = 1
Query:  634 DLSLEHVSLLPVGSLLEFGRFPTYYDCSRKKALVRAASVPPGARVLALSHPWESPGNP--------DPSGHQFEALRRFLLGSKAVGGTRPRFDYVWLLFSCASQNRIKPD----FKLHLRNVVTAYCRADRVLVVPKLEVRPKDGTYFSDLTEYSTRGWCAAEFLCALRLSVPLTLSL 1134
            ++ LE+V +L V   L  GR   +  C+     V   ++    +VL +SH W+             D    QF+ ++ FL   +       +  +VWL  SC +Q+R   D    F L L N+ TA   +  VLVVP+LE       YFS+L EY+ RGWC  E + A+ L   + L L
Sbjct:   33 NMDLENVVVLTVQDFLASGRMVLFEKCAAGNQHVVIKNLGAQHKVLFVSHRWQVLSEDCSRAVKADDDVNVQFQVVKAFLESQEGR-----QITHVWLDLSCINQDRGTADGLKQFLLKLDNIGTAIACSHLVLVVPRLEQVEGQPLYFSNLQEYTERGWCLFEIVSAMMLQCRIVLGL 206          
BLAST of mRNA_P-wetherbeei_contig16887.1.1 vs. uniprot
Match: A0A7S3YE75_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YE75_HETAK)

HSP 1 Score: 59.3 bits (142), Expect = 1.240e-6
Identity = 60/203 (29.56%), Postives = 83/203 (40.89%), Query Frame = 1
Query:  703 YYDCSRKKALVRAASVPPGARVLALSHPWESP-GN-PD-PSGHQFEALRRFLLGSKAVGGTRPRFDYVWLLFSCASQNRIKPD----FKLHLRNVVTAYCRADRVLVVPKLE--------VRPKDGT-----------------------YFSDLTEYSTRGWCAAEFLCALRLSVPLTLSLRHGAA--------GSGGGNGG 1173
            Y +  R+   V A ++ PGA +L +SH W+   GN PD P   Q+  ++ FL  S        R  +VW  F C +Q R   +    F   L N+ TA   +  +LVVP++E         + K+G                         FSDL EY+ RGWC  E +  L     + L L  G A        G G G GG
Sbjct:    3 YEEVERRGWHVPATALLPGAHLLFVSHRWQDAYGNQPDSPDRLQYRVVQTFLETSP----DGQRATHVWYDFGCINQERATTEGLTAFLQKLDNIPTAIFLSQTILVVPRIENASTWLAQKKAKEGEKKKKTKTMRASKLVNEEQARADGIFSDLYEYTARGWCLMESMTGLFGGSVIYLGLVAGGADDLTPTAGGRGAGAGG 201          
BLAST of mRNA_P-wetherbeei_contig16887.1.1 vs. uniprot
Match: A0A0M0JGH7_9EUKA (Trafficking protein particle complex 8 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JGH7_9EUKA)

HSP 1 Score: 56.6 bits (135), Expect = 5.030e-5
Identity = 28/72 (38.89%), Postives = 42/72 (58.33%), Query Frame = 1
Query:  763 RVLALSHPWESPGNPDPSGHQFEALRRFLLGSKAVGGTRPRFDYVWLLFSCASQNRIKPD----FKLHLRNV 966
            +VLA+SH W+ P  PDP+G Q +A++R L  +       P+++Y+WL +SCA Q    P     F L L N+
Sbjct:  215 KVLAVSHRWDRPEEPDPTGAQMKAIKRMLRAN-------PQYEYMWLDYSCAPQGERTPQQQELFSLTLENM 279          
BLAST of mRNA_P-wetherbeei_contig16887.1.1 vs. uniprot
Match: A0A0M0JLP8_9EUKA (Protein unc-45 homolog B n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JLP8_9EUKA)

HSP 1 Score: 56.2 bits (134), Expect = 8.490e-5
Identity = 41/121 (33.88%), Postives = 56/121 (46.28%), Query Frame = 1
Query:  766 VLALSHPWESPGNPDPSGHQFEALRRFLLGSKAVGGTRPRFDYVWLLFSCASQNRIKPD----FKLHLRNVVTAYCRADRVLVVPKLEVRPKDGTYFSDLTEYSTRGWCAAEFLCALRLSV 1116
            VLA+SH WE P  PD  G QF A+R+++ G       +P    VW+ FSCA Q    P     FK  LR V   +    RVL++              DLT Y TR W   E   +++++ 
Sbjct:  115 VLAVSHRWEQPAEPDTEGKQFAAIRKYVRG-------KPAIKLVWVDFSCAPQKERTPAEELVFKRTLRFVNLLFL-GSRVLIL-------------CDLT-YMTRFWTLLEAWISMQMTT 213          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16887.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KTJ5_9PHAE4.210e-5744.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FGT9_ECTSI3.670e-5646.72Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A7S3XYW2_HETAK1.830e-2137.50Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4DDY8_HETAK1.970e-1632.92Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A6V1VGB7_HETAK2.140e-1231.28Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3YE75_HETAK1.240e-629.56Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A0M0JGH7_9EUKA5.030e-538.89Trafficking protein particle complex 8 n=1 Tax=Chr... [more]
A0A0M0JLP8_9EUKA8.490e-533.88Protein unc-45 homolog B n=1 Tax=Chrysochromulina ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16887contigP-wetherbeei_contig16887:3..1300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FGT9
PFAMsAnk_2,Ank_3,Ank_4,Ank_5,SIR2
Model size1208
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.02e-57
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Descriptionspectrin binding
Cds size1206
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186100.947837-CDS-P-wetherbeei_contig16887:2..5661683186100.947837-CDS-P-wetherbeei_contig16887:2..566Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16887 3..566 +
1683186100.957819-CDS-P-wetherbeei_contig16887:656..12981683186100.957819-CDS-P-wetherbeei_contig16887:656..1298Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16887 657..1298 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16887.1.1prot_P-wetherbeei_contig16887.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16887 3..1298 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16887.1.1

>prot_P-wetherbeei_contig16887.1.1 ID=prot_P-wetherbeei_contig16887.1.1|Name=mRNA_P-wetherbeei_contig16887.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=402bp
AVEVCRQLLEEHNFAVDAPNGDGDTPLLLAAARGHVEVVEYLVELHDASP
AARDAAGATALHKACAGGHREVAEVLCRRYGADASVRRADGATALHLAAA
AGDPDLVAFLVEECRADVEAADADGNRPLHAAAAAGRGPAVRRLVEGLGA
NRDARNRLGQLPFEAALAAGHVEVSDCLLALGSDGDKERHGGGFRRAGRW
LGQGLRSGHLPDLSLEHVSLLPVGSLLEFGRFPTYYDCSRKKALVRAASV
PPGARVLALSHPWESPGNPDPSGHQFEALRRFLLGSKAVGGTRPRFDYVW
LLFSCASQNRIKPDFKLHLRNVVTAYCRADRVLVVPKLEVRPKDGTYFSD
LTEYSTRGWCAAEFLCALRLSVPLTLSLRHGAAGSGGGNGGDVDDGNDLP
VF
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mRNA from alignment at P-wetherbeei_contig16887:3..1300+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16887.1.1 ID=mRNA_P-wetherbeei_contig16887.1.1|Name=mRNA_P-wetherbeei_contig16887.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1298bp|location=Sequence derived from alignment at P-wetherbeei_contig16887:3..1300+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGTGGAGGTTTGCCGGCAGCTGCTGGAAGAGCATAACTTCGCGGTCGA CGCGCCCAACGGCGATGGTGACACGCCGCTGCTGCTGGCGGCCGCGCGCG GCCACGTCGAGGTGGTAGAATACCTCGTCGAATTGCACGATGCCAGCCCG GCGGCGCGCGACGCCGCTGGTGCGACGGCGCTCCACAAGGCGTGCGCCGG CGGCCACCGCGAGGTGGCGGAGGTGCTCTGCCGTCGCTACGGTGCCGACG CCTCCGTCCGGCGCGCCGACGGCGCGACGGCGCTGCACCTGGCCGCGGCA GCCGGCGATCCCGACTTGGTGGCCTTTCTCGTGGAGGAGTGCAGGGCGGA CGTGGAGGCCGCCGACGCCGACGGCAATCGCCCGCTGCACGCAGCGGCAG CGGCGGGGCGCGGCCCGGCCGTCCGCCGGCTGGTGGAAGGGCTCGGGGCG AACCGGGACGCCCGAAACCGGCTCGGGCAGCTGCCGTTCGAGGCGGCGCT GGCGGCGGGGCATGTCGAGGTGTCGGACTGCCTCCTGGCGCTCGGCAGTG ACGGTGACAAGGAGGTCGACGACGACAGCGACGACGGGGACGGTGGCGAC GGCGGTGGCAATGGAAATGGCAGTAACGGCGGGCGGCAGAACAGCGGGAC CAAGCGGCACGGCGGCGGCTTCAGGCGCGCCGGCCGCTGGCTGGGGCAAG GGCTGCGCTCCGGACATCTCCCGGATCTGTCACTGGAGCACGTCAGCCTG CTGCCGGTCGGATCACTGCTCGAGTTCGGCCGATTCCCCACCTACTATGA CTGCAGCAGGAAGAAGGCGCTCGTGCGCGCCGCCTCGGTGCCGCCGGGCG CCCGTGTCCTCGCCCTCAGCCACCCGTGGGAGTCGCCGGGTAACCCGGAC CCGTCCGGACACCAGTTTGAGGCGCTGAGGCGCTTCCTTCTCGGCAGCAA AGCCGTCGGCGGCACGCGCCCGCGGTTCGACTATGTGTGGCTGCTGTTTT CGTGCGCGAGCCAGAACCGCATCAAGCCCGACTTCAAGCTGCACCTGCGC AACGTGGTGACGGCGTACTGCCGCGCCGACCGCGTGCTGGTGGTGCCCAA GCTCGAGGTCCGCCCCAAGGACGGAACTTACTTCTCCGACCTGACCGAGT ACAGCACGCGTGGCTGGTGCGCCGCCGAGTTTCTGTGCGCGCTGCGCCTC AGCGTTCCGCTGACGCTGTCGCTGCGCCACGGGGCGGCGGGCAGCGGCGG CGGAAACGGCGGCGATGTTGACGATGGCAATGACTTGCCGGTGTTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16887:3..1300+

>mRNA_P-wetherbeei_contig16887.1.1 ID=mRNA_P-wetherbeei_contig16887.1.1|Name=mRNA_P-wetherbeei_contig16887.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1206bp|location=Sequence derived from alignment at P-wetherbeei_contig16887:3..1300+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGTGGAGGTTTGCCGGCAGCTGCTGGAAGAGCATAACTTCGCGGTCGA
CGCGCCCAACGGCGATGGTGACACGCCGCTGCTGCTGGCGGCCGCGCGCG
GCCACGTCGAGGTGGTAGAATACCTCGTCGAATTGCACGATGCCAGCCCG
GCGGCGCGCGACGCCGCTGGTGCGACGGCGCTCCACAAGGCGTGCGCCGG
CGGCCACCGCGAGGTGGCGGAGGTGCTCTGCCGTCGCTACGGTGCCGACG
CCTCCGTCCGGCGCGCCGACGGCGCGACGGCGCTGCACCTGGCCGCGGCA
GCCGGCGATCCCGACTTGGTGGCCTTTCTCGTGGAGGAGTGCAGGGCGGA
CGTGGAGGCCGCCGACGCCGACGGCAATCGCCCGCTGCACGCAGCGGCAG
CGGCGGGGCGCGGCCCGGCCGTCCGCCGGCTGGTGGAAGGGCTCGGGGCG
AACCGGGACGCCCGAAACCGGCTCGGGCAGCTGCCGTTCGAGGCGGCGCT
GGCGGCGGGGCATGTCGAGGTGTCGGACTGCCTCCTGGCGCTCGGCAGTG
ACGGTGACAAGGAGCGGCACGGCGGCGGCTTCAGGCGCGCCGGCCGCTGG
CTGGGGCAAGGGCTGCGCTCCGGACATCTCCCGGATCTGTCACTGGAGCA
CGTCAGCCTGCTGCCGGTCGGATCACTGCTCGAGTTCGGCCGATTCCCCA
CCTACTATGACTGCAGCAGGAAGAAGGCGCTCGTGCGCGCCGCCTCGGTG
CCGCCGGGCGCCCGTGTCCTCGCCCTCAGCCACCCGTGGGAGTCGCCGGG
TAACCCGGACCCGTCCGGACACCAGTTTGAGGCGCTGAGGCGCTTCCTTC
TCGGCAGCAAAGCCGTCGGCGGCACGCGCCCGCGGTTCGACTATGTGTGG
CTGCTGTTTTCGTGCGCGAGCCAGAACCGCATCAAGCCCGACTTCAAGCT
GCACCTGCGCAACGTGGTGACGGCGTACTGCCGCGCCGACCGCGTGCTGG
TGGTGCCCAAGCTCGAGGTCCGCCCCAAGGACGGAACTTACTTCTCCGAC
CTGACCGAGTACAGCACGCGTGGCTGGTGCGCCGCCGAGTTTCTGTGCGC
GCTGCGCCTCAGCGTTCCGCTGACGCTGTCGCTGCGCCACGGGGCGGCGG
GCAGCGGCGGCGGAAACGGCGGCGATGTTGACGATGGCAATGACTTGCCG
GTGTTT
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