mRNA_P-wetherbeei_contig1680.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1680.2.1
Unique NamemRNA_P-wetherbeei_contig1680.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1680.2.1 vs. uniprot
Match: A0A835Z0M6_9STRA (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0M6_9STRA)

HSP 1 Score: 268 bits (684), Expect = 9.060e-84
Identity = 132/234 (56.41%), Postives = 163/234 (69.66%), Query Frame = 3
Query:  366 STTACGGAANKKLYPGHYPMTVFQRAFLAGTSAFTAIADPTRADMVAVLGETTGTEALRRLHRTMVLDAGGRELLTARPVLTKESAGFDRLRSLPAGTLGRAYADFMAHHGFSPDGRCAVRFVDDSDLAYVLTRYRQVHDFWHVLAGLPPTVEAELALKVVEMVQTGLPVTALAALCGPAALSAIQRRHFTRIYVPWALRVGRRAAPLINIWYERQWDVPLEELRRTLRFEPAP 1067
            S +A G    + LY GH P++  QR  L   SAF+A ADP RADMVA LGETTG  AL+++H  M+ D  G ELL  RP L + S   + L  LP+GT G+AYADFMAH+ F+PD R  VRFVDD+DLAYV+ RYRQVHD WHVL+GLPP++E E+ALK  EMVQTGLPV A++AL G A +    R    +  VPWA+R GRR+ PL+N+WYER WD+ L   R  L+FEPAP
Sbjct:   11 SKSAAGEPCKRILYKGHNPISPSQRVGLTFISAFSAFADPERADMVAALGETTGHRALKQMHHRMLQDPDGIELLRERPQLDEHSVDLEALGQLPSGTFGKAYADFMAHNQFTPDSRLPVRFVDDADLAYVMARYRQVHDLWHVLSGLPPSLEGEIALKWFEMVQTGLPVAAISALVGAARVPREGRAALRQKLVPWAIRAGRRSVPLMNVWYERYWDMYLSNFREKLKFEPAP 244          
BLAST of mRNA_P-wetherbeei_contig1680.2.1 vs. uniprot
Match: W7U2W9_9STRA (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U2W9_9STRA)

HSP 1 Score: 262 bits (669), Expect = 1.320e-80
Identity = 133/250 (53.20%), Postives = 168/250 (67.20%), Query Frame = 3
Query:  351 RLAALSTTACGGAANKK----------LYPGHYPMTVFQRAFLAGTSAFTAIADPTRADMVAVLGETTGTEALRRLHRTMVLDAGGRELLTARPVLTKESAGFDRLRSLPAGTLGRAYADFMAHHGFSPDGRCAVRFVDDSDLAYVLTRYRQVHDFWHVLAGLPPTVEAELALKVVEMVQTGLPVTALAALCGPAALSAIQRRHFTRIYVPWALRVGRRAAPLINIWYERQWDVPLEELRRTLRFEPAPP 1070
            R+   STT+   +  K+          LY  H P + FQ+ ++AG SA TA  DP R DMVA LGETTGT AL+RL R M  D  GRELL A+P + ++S   DRLR LP GT GR YA F+ HHG+SPD R AVRFVDD++LA+V+ RYRQVHDFWHVL GLPPTV  ELALK  EMVQT LP+ A + + GP +LSA +R+     Y+PWA+R   +A PL+ +WYER ++ PLE +R+ L+   APP
Sbjct:   57 RMRPFSTTSSQSSGGKETSPPAVPETPLYSSHIPTSGFQKLYIAGFSAATAFRDPERGDMVAALGETTGTRALQRLRRAMSADPVGRELLAAKPDIKEDSTRPDRLRRLPEGTFGREYARFLDHHGYSPDERAAVRFVDDAELAFVMQRYRQVHDFWHVLCGLPPTVLGELALKWFEMVQTRLPIAAFSGVVGPLSLSAQERKLLKEQYIPWAVRAAVKARPLMCVWYERSFEEPLELMRKRLQIVTAPP 306          
BLAST of mRNA_P-wetherbeei_contig1680.2.1 vs. uniprot
Match: D7FK62_ECTSI (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK62_ECTSI)

HSP 1 Score: 249 bits (637), Expect = 2.340e-75
Identity = 130/258 (50.39%), Postives = 167/258 (64.73%), Query Frame = 3
Query:  366 STTACGGAANKKLYPGHYPMTVFQRAFLAGTSAFTAIADPTRADMVAVLGETTGTEALRRLHRTMVLDAGGRELLTARPVLTKESAGFDRLRSLPAGTLGRAYADFMAHHGFSPDGRCAVRFVDDSDLAYVLTRYRQVHDFWHVLAGLPPTVEAELALKVVEMVQTGLPVTALAALCGPAALSAIQ-----------------------RRHFTRIYVPWALRVGRRAA-PLINIWYERQWDVPLEELRRTLRFEPAP 1067
            +TTA G AA + LY GH P +  QR  +AG +  TA+ DP RADMVA LGE TG  AL +L+R+M+ D  GRE+L ARPV+ + +     L +LP GTLG++Y++FM  + FSPDGR  V++VDD DLAYV+ RYR+VHD WH L GLP TVE ELALK  E+VQTGLPV AL+A+ GP AL + +                       R    R +VPWA+R GRRA  PL+ +WYE++W+ PLE +RR L  E AP
Sbjct:   78 NTTASGPAAKRVLYSGHQPTSPLQRTAMAGWATVTALMDPERADMVATLGEVTGRLALEQLYRSMLADPEGREILRARPVINEATVDLAALAALPDGTLGKSYSNFMKENNFSPDGRSPVKYVDDPDLAYVMRRYREVHDLWHALTGLPATVEGELALKWFELVQTGLPVCALSAVLGPLALPSKEPPAPTTTPSXXXSSGSGRKRRGSREVLARTFVPWAIRAGRRARRPLVCVWYEKRWEQPLELVRRDLGVEMAP 335          
BLAST of mRNA_P-wetherbeei_contig1680.2.1 vs. uniprot
Match: A0A6T5QVX1_HETAK (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5QVX1_HETAK)

HSP 1 Score: 236 bits (603), Expect = 2.350e-71
Identity = 123/226 (54.42%), Postives = 149/226 (65.93%), Query Frame = 3
Query:  393 NKKLYPGHYPMTVFQRAFLAGTSAFTAIADPTRADMVAVLGETTGTEALRRLHRTMVLDAGGRELLTARPVLTKESAGFDRLRSLPAGTLGRAYADFMAHHGFSPDGRCAVRFVDDSDLAYVLTRYRQVHDFWHVLAGLPPTVEAELALKVVEMVQTGLPVTALAALCGPAALSAIQRRHFTRIYVPWALRV-GRRAAPLINIWYERQWDVPLEELRRTLRFEPAP 1067
            N +LYP H P + FQ+ FLA  SA  A+ DP RADMVAVL ETTG  ALR L   M  D  G+++L  +P+L + +   + L SLP GT G AY  FM  +GFSP+GR  VRFVDD++LAYVL RYRQVHD WH L GLPPTV  ELALK +E++QTGLPV AL+A  GP AL+   R    R+Y+PWALR  G   APL+ + YE  W  PL  +R  L   PAP
Sbjct:   29 NWRLYPTHQPTSTFQKGFLAVYSALVALNDPERADMVAVLSETTGEIALRNLRDVMKADPVGQQILLEKPILDETTVNLENLGSLPRGTFGHAYYTFMDGNGFSPEGRAPVRFVDDAELAYVLLRYRQVHDLWHALFGLPPTVGGELALKWLELLQTGLPVAALSAAAGPLALAPADRALLRRVYLPWALRAHGALRAPLMCVRYEALWGEPLAAVRARLGVLPAP 254          
BLAST of mRNA_P-wetherbeei_contig1680.2.1 vs. uniprot
Match: A0A067BMW8_SAPPC (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BMW8_SAPPC)

HSP 1 Score: 234 bits (598), Expect = 1.010e-70
Identity = 124/255 (48.63%), Postives = 161/255 (63.14%), Query Frame = 3
Query:  306 AMRRCVRRVRVPLPARLAA-LSTTACGGAANKKLYPGHYPMTVFQRAFLAGTSAFTAIADPTRADMVAVLGETTGTEALRRLHRTMVLDAGGRELLTARPVLTKESAGFDRLRSLPAGTLGRAYADFMAHHGFSPDGRCAVRFVDDSDLAYVLTRYRQVHDFWHVLAGLPPTVEAELALKVVEMVQTGLPVTALAALCGPAALSAIQRRHFTRIYVPWALRVGRRAAPLINIWYERQWDVPLEELRRTLRFEPAP 1067
            A RRC+ +V     AR A+ L+ +A G      L+  H P T  Q+  +A T+A +  A+P R DM+A LG+ TG  ALR++H  M  D  G E+L  +P +       D LRSLP  + G AY  FM  HGF  DGR  VRFVDD++LAYVL RYR++HDFWHVL GLPPTV +E+ALK VE+VQTGLPV AL+   GP  LS  +R+     +VPWA R GR A  L+N++YER+++  LE+LRR L    AP
Sbjct:    2 APRRCLLQV----AARAASSLAPSAAGPPTRHVLHAHHVPTTPTQKLLVAATAAVSVFANPERGDMLAALGDATGEVALRQMHLKMCSDPVGMEILAQKPRIRSSVTDIDALRSLPTDSFGYAYTQFMDAHGFEADGRAHVRFVDDAELAYVLQRYRELHDFWHVLFGLPPTVFSEIALKYVELVQTGLPVCALSGFVGPLRLSCDERKELLGTFVPWAYRAGREAPCLLNVYYEREYETKLEDLRRRLNIRVAP 252          
BLAST of mRNA_P-wetherbeei_contig1680.2.1 vs. uniprot
Match: K3XAS5_GLOUD (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XAS5_GLOUD)

HSP 1 Score: 233 bits (593), Expect = 1.240e-69
Identity = 119/247 (48.18%), Postives = 158/247 (63.97%), Query Frame = 3
Query:  339 PLPARLAALST---TACGGAANKKLYPGHYPMTVFQRAFLAGTSAFTAIADPTRADMVAVLGETTGTEALRRLHRTMVLDAGGRELLTARPVLTKESAGFDRLRSLPAGTLGRAYADFMAHHGFSPDGRCAVRFVDDSDLAYVLTRYRQVHDFWHVLAGLPPTVEAELALKVVEMVQTGLPVTALAALCGPAALSAIQRRHFTRIYVPWALRVGRRAAPLINIWYERQWDVPLEELRRTLRFEPAPP 1070
            PL A  A  S+   +A G    + LY  H P +  Q+ FL+  SA +   DP R DM+A+LGE TG +ALR++H  M  D  G  +LT RP +  +      LR+LP  T G AY+ FM  HGF  DGR  V++VDD +LAYV+ R+R++HDFWHVL GLPPTV  E+ALK VE++QT LPV AL+   GP  L++ +RR   R Y+PWA R GR A  L+++ YE +++ PLEELR+ LR E APP
Sbjct:   29 PLSAAAATASSPLGSAAGEPQKRVLYDTHMPTSPVQKVFLSVFSALSVFTDPERGDMLALLGEVTGRDALRQVHAKMCSDPVGVRILTERPSIRSDQIDMTYLRALPKHTFGYAYSQFMDSHGFEADGRAYVKYVDDEELAYVMKRHRELHDFWHVLFGLPPTVFGEIALKYVELLQTKLPVCALSGFVGPLRLTSEERRVLVRDYIPWANRAGRNAHFLLSVMYEEEFETPLEELRQRLRIEVAPP 275          
BLAST of mRNA_P-wetherbeei_contig1680.2.1 vs. uniprot
Match: A0A1V9YRS5_9STRA (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YRS5_9STRA)

HSP 1 Score: 230 bits (586), Expect = 6.030e-69
Identity = 121/253 (47.83%), Postives = 159/253 (62.85%), Query Frame = 3
Query:  312 RRCVRRVRVPLPARLAALSTTACGGAANKKLYPGHYPMTVFQRAFLAGTSAFTAIADPTRADMVAVLGETTGTEALRRLHRTMVLDAGGRELLTARPVLTKESAGFDRLRSLPAGTLGRAYADFMAHHGFSPDGRCAVRFVDDSDLAYVLTRYRQVHDFWHVLAGLPPTVEAELALKVVEMVQTGLPVTALAALCGPAALSAIQRRHFTRIYVPWALRVGRRAAPLINIWYERQWDVPLEELRRTLRFEPAPP 1070
            RR V RV   L    + ++ +A G      L+  H P T  Q+  +A T+A + +A+P R DM+A LG+ TG  ALR++H  M  D  G E+L  +P +       D LRSLP  + G AY  FM  HGF  DGR  VRFVDD +LAYVL RYR++HDFWHVL GLPPTV  ELALK VE+VQTGLPV AL+ + GP  LS  +R+     Y+PWA + G++A  L+N++YER+++  LE+LR  LR   APP
Sbjct:    5 RRSVLRV---LARSASTVAPSAAGPPTQHLLHAHHVPTTPLQKILVAATAAVSVMANPERGDMLAALGDATGEVALRQMHLKMCSDPTGMEILAQKPRIRSTVTDVDALRSLPKDSFGYAYTQFMDAHGFEADGRAHVRFVDDPELAYVLQRYRELHDFWHVLFGLPPTVFGELALKYVELVQTGLPVAALSGIVGPLRLSCDERKELFTTYLPWAHQAGKQAPFLMNVYYEREYESNLEDLRARLRILVAPP 254          
BLAST of mRNA_P-wetherbeei_contig1680.2.1 vs. uniprot
Match: A0A8K1FEZ4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FEZ4_PYTOL)

HSP 1 Score: 228 bits (580), Expect = 9.120e-68
Identity = 109/230 (47.39%), Postives = 145/230 (63.04%), Query Frame = 3
Query:  381 GGAANKKLYPGHYPMTVFQRAFLAGTSAFTAIADPTRADMVAVLGETTGTEALRRLHRTMVLDAGGRELLTARPVLTKESAGFDRLRSLPAGTLGRAYADFMAHHGFSPDGRCAVRFVDDSDLAYVLTRYRQVHDFWHVLAGLPPTVEAELALKVVEMVQTGLPVTALAALCGPAALSAIQRRHFTRIYVPWALRVGRRAAPLINIWYERQWDVPLEELRRTLRFEPAPP 1070
            G    + LY  H P +  Q+  L+  SAFT  A+P R DM+A LGE TG EAL+R+H  M  D  G  +L  +P +  +   FD LR+LP  T G AY+ FM  HGF  DGR  V+++DD +LAYV+ RYR++HDFWH L GLPPTV  E+ LK VE+VQTGLP  AL+   GP  L + +R+     Y+PWA   G +A  L+N++YE++++ PLEELR  L   P PP
Sbjct:   48 GEPCKRVLYDTHMPTSPTQKILLSFVSAFTVFANPERGDMLATLGEVTGREALQRVHARMCSDPVGTRILVEQPTIRSDQIDFDYLRNLPKDTFGYAYSQFMDAHGFEADGRAYVKYIDDPELAYVMQRYRELHDFWHTLFGLPPTVFGEIILKYVELVQTGLPHCALSGFVGPLRLESAERKRLVTEYIPWANEAGHQAKFLMNVYYEKEFETPLEELRTRLNILPPPP 277          
BLAST of mRNA_P-wetherbeei_contig1680.2.1 vs. uniprot
Match: A0A485K2E7_9STRA (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K2E7_9STRA)

HSP 1 Score: 227 bits (578), Expect = 1.320e-67
Identity = 117/239 (48.95%), Postives = 147/239 (61.51%), Query Frame = 3
Query:  357 AALSTTACGGAANKK-LYPGHYPMTVFQRAFLAGTSAFTAIADPTRADMVAVLGETTGTEALRRLHRTMVLDAGGRELLTARPVLTKESAGFDRLRSLPAGTLGRAYADFMAHHGFSPDGRCAVRFVDDSDLAYVLTRYRQVHDFWHVLAGLPPTVEAELALKVVEMVQTGLPVTALAALCGPAALSAIQRRHFTRIYVPWALRVGRRAAPLINIWYERQWDVPLEELRRTLRFEPAPP 1070
            AALSTT+  G   K  LY  H P +  Q+  +A  SAFT   DP R DM+A LG+ TG  ALR++H  M  D  GR++L  +P         D LR LP  T G AY  FM  HGF  DGR  V+FVDD +LAYV+ RYR++HDFWHVL GLPPT  AE+ LK VE+VQTGLPV  L+   GP  L++ QRR     Y+PWA R G+ A  L+N++YE+++  PL +LR  L     PP
Sbjct:   26 AALSTTSAAGLPTKHVLYKAHVPTSPLQKIAVAVGSAFTVFTDPERGDMLAALGDVTGAVALRQMHLKMYSDPVGRQILAEKPRFRSHLVDIDALRLLPTDTFGFAYTQFMDAHGFEADGRADVKFVDDPELAYVMQRYRELHDFWHVLYGLPPTEFAEIILKFVELVQTGLPVCTLSGFVGPLRLTSGQRRQLLCTYIPWAHRAGKHAPFLMNVYYEKEFHTPLADLRARLGILLPPP 264          
BLAST of mRNA_P-wetherbeei_contig1680.2.1 vs. uniprot
Match: A0A0L0T2B7_ALLM3 (Ubiquinone biosynthesis protein COQ4, mitochondrial n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0T2B7_ALLM3)

HSP 1 Score: 225 bits (574), Expect = 1.460e-67
Identity = 114/224 (50.89%), Postives = 143/224 (63.84%), Query Frame = 3
Query:  399 KLYPGHYPMTVFQRAFLAGTSAFTAIADPTRADMVAVLGETTGTEALRRLHRTMVLDAGGRELLTARPVLTKESAGFDRLRSLPAGTLGRAYAD-FMAHHGFSPDGRCAVRFVDDSDLAYVLTRYRQVHDFWHVLAGLPPTVEAELALKVVEMVQTGLPVTALAALCGPAALSAIQRRHFTRIYVPWALRVGRRAAPLINIWYERQWDVPLEELRRTLRFEPAP 1067
            KLYP H P ++F++  L       A+ DP RADMVA +GETTG  AL RL   M+  + GR +L  RP++T E+    RL +LP  TLG AY   FM  HG+ P+ R  V F+DD++LAYV+ RYRQVHD WH + GLPPTVE ELALK  E  QTGLP+TAL A  GP  LS  +R      Y+PWA+  G RA PL+N++YE   +  LE LR+ LR  PAP
Sbjct:    2 KLYPTHIPTSLFEKVLLTVGGGLKALHDPLRADMVAAVGETTGRAALVRLRDQMLRSSTGRRILRERPIITSETFPPFRLEALPESTLGGAYYHGFMQKHGYVPESRVPVHFIDDAELAYVMLRYRQVHDLWHAMTGLPPTVEGELALKAFEYAQTGLPMTALGAALGPVLLSHNERARLVSTYLPWAVMAGTRAKPLMNVYYEEVLEEDLEALRQELRVTPAP 225          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1680.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z0M6_9STRA9.060e-8456.41Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
W7U2W9_9STRA1.320e-8053.20Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
D7FK62_ECTSI2.340e-7550.39Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
A0A6T5QVX1_HETAK2.350e-7154.42Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
A0A067BMW8_SAPPC1.010e-7048.63Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
K3XAS5_GLOUD1.240e-6948.18Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
A0A1V9YRS5_9STRA6.030e-6947.83Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
A0A8K1FEZ4_PYTOL9.120e-6847.39Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A485K2E7_9STRA1.320e-6748.95Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
A0A0L0T2B7_ALLM31.460e-6750.89Ubiquinone biosynthesis protein COQ4, mitochondria... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1680contigP-wetherbeei_contig1680:4613..6083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FK62
Preferred nameCOQ4
PFAMsCoq4
Model size1471
Max annot lvl2759|Eukaryota
KEGG koko:K18586
Hectar predicted targeting categorymitochondrion
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0016020,GO:0019866,GO:0019898,GO:0031090,GO:0031312,GO:0031314,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0042180,GO:0042181,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0051186,GO:0051188,GO:0071704,GO:1901576,GO:1901661,GO:1901663
Exons1
Evalue6.12e-79
EggNOG OGsCOG5031@1|root,KOG3244@2759|Eukaryota
Ec32 ortholog descriptionUbiquinone biosynthesis protein Coq4
Ec32 orthologEc-04_005680.1
Descriptionubiquinone biosynthetic process
Cds size768
COG categoryH
BRITEko00000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186098.1627417-UTR-P-wetherbeei_contig1680:4612..49201683186098.1627417-UTR-P-wetherbeei_contig1680:4612..4920Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1680 4613..4920 +
1683186098.18662-UTR-P-wetherbeei_contig1680:5688..60831683186098.18662-UTR-P-wetherbeei_contig1680:5688..6083Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1680 5689..6083 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186098.177861-CDS-P-wetherbeei_contig1680:4920..56881683186098.177861-CDS-P-wetherbeei_contig1680:4920..5688Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1680 4921..5688 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1680.2.1prot_P-wetherbeei_contig1680.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1680 4921..5688 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1680.2.1

>prot_P-wetherbeei_contig1680.2.1 ID=prot_P-wetherbeei_contig1680.2.1|Name=mRNA_P-wetherbeei_contig1680.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=256bp
MRRCVRRVRVPLPARLAALSTTACGGAANKKLYPGHYPMTVFQRAFLAGT
SAFTAIADPTRADMVAVLGETTGTEALRRLHRTMVLDAGGRELLTARPVL
TKESAGFDRLRSLPAGTLGRAYADFMAHHGFSPDGRCAVRFVDDSDLAYV
LTRYRQVHDFWHVLAGLPPTVEAELALKVVEMVQTGLPVTALAALCGPAA
LSAIQRRHFTRIYVPWALRVGRRAAPLINIWYERQWDVPLEELRRTLRFE
PAPPG*
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mRNA from alignment at P-wetherbeei_contig1680:4613..6083+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1680.2.1 ID=mRNA_P-wetherbeei_contig1680.2.1|Name=mRNA_P-wetherbeei_contig1680.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1471bp|location=Sequence derived from alignment at P-wetherbeei_contig1680:4613..6083+ (Phaeothamnion wetherbeei SAG_119_79)
TTGCCTACAAACTAGCCCCCGTGCCTTTCTTCCTCGGCGTTCAAAAGAAA GCGCCGTGGGGCCAAGCCAAGTGAGCGACTTTCTAAGGTTGATCTTCTTA GTTCCCTCCTCTATGAAAACAGGTTTCATTACCATGTTTAGATGATCTTT ATGCAGCAAATCTGCTGTGTAAACCGTACTCCATTTGGTTCGCTCAGGGG CCTTCGCCGACGATCCCGCGTATCTCTTTCTCACTACCCATCGCAGAAAC CCCCCTTTGCCGCCAAATAATTTCGTCTTCTTCATGGAGGCAAAGCTGGG AGAAAGCCATGCGGCGTTGCGTGCGTCGTGTACGTGTTCCTCTTCCTGCA CGTTTGGCCGCGCTTTCCACAACAGCGTGTGGGGGTGCCGCAAATAAAAA GCTTTATCCAGGACACTATCCCATGACAGTGTTTCAGCGAGCCTTTTTGG CCGGCACGTCAGCATTTACTGCAATCGCTGACCCGACTCGCGCCGACATG GTTGCAGTGCTCGGCGAGACAACGGGCACAGAAGCTCTAAGGCGTCTGCA TCGCACGATGGTGCTTGATGCGGGTGGGCGGGAGCTGCTGACGGCGCGGC CTGTTCTGACGAAAGAAAGTGCCGGTTTCGACCGGCTGCGCTCGCTGCCT GCGGGCACACTCGGCCGCGCCTACGCCGACTTTATGGCGCACCACGGTTT CAGCCCCGACGGGCGCTGCGCCGTCCGTTTCGTCGACGACTCGGACCTCG CCTACGTCTTGACGCGCTACCGCCAAGTCCATGACTTCTGGCACGTGCTC GCCGGCCTGCCACCGACGGTGGAGGCCGAACTGGCGCTCAAGGTAGTCGA AATGGTGCAGACGGGGTTGCCGGTCACCGCCTTGGCGGCCCTCTGCGGGC CGGCGGCGCTGTCGGCGATCCAGCGGCGCCATTTTACACGCATCTACGTG CCGTGGGCGCTCCGCGTCGGCCGGCGCGCGGCGCCGCTCATCAACATCTG GTACGAGCGCCAGTGGGACGTGCCGCTGGAGGAGCTGCGGCGGACGCTGC GCTTCGAGCCCGCCCCACCCGGCTGATGACTTGATGGCACCAATACAGTA TGGCGCTTAAAGCAAGGATTCGAAAGGTGAGCAGCGATAAGGCTCCGACA GCTGCTTAGCTAACTGCCGCTGCCGCGACTTTTCAGAGTTCGATGTAAGT TGTAGCTTCATGCATATTTGCTCGGAGGTTGCGCGCTTCAGGAGCAGAGT AAATAGGACATGTTACAACGTCAGTATGTAATGGGAAGCTGGCGTCAAAA ACTGGTGAGGTTAATTTCACCTCCCTGGGGTGCTTTTTGTCTATACCACC CTGTCTGTTGCACCTGGTGGTATGGGAAAAAGCAGCAAAATGGGACGGCA AACACACCAAAACACATTCCCGGGAGACTCATTTCCACCGGGGCAGGCAG TGCGCTGCCCGGGGCGCCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1680:4613..6083+

>mRNA_P-wetherbeei_contig1680.2.1 ID=mRNA_P-wetherbeei_contig1680.2.1|Name=mRNA_P-wetherbeei_contig1680.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=768bp|location=Sequence derived from alignment at P-wetherbeei_contig1680:4613..6083+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGCGTTGCGTGCGTCGTGTACGTGTTCCTCTTCCTGCACGTTTGGC
CGCGCTTTCCACAACAGCGTGTGGGGGTGCCGCAAATAAAAAGCTTTATC
CAGGACACTATCCCATGACAGTGTTTCAGCGAGCCTTTTTGGCCGGCACG
TCAGCATTTACTGCAATCGCTGACCCGACTCGCGCCGACATGGTTGCAGT
GCTCGGCGAGACAACGGGCACAGAAGCTCTAAGGCGTCTGCATCGCACGA
TGGTGCTTGATGCGGGTGGGCGGGAGCTGCTGACGGCGCGGCCTGTTCTG
ACGAAAGAAAGTGCCGGTTTCGACCGGCTGCGCTCGCTGCCTGCGGGCAC
ACTCGGCCGCGCCTACGCCGACTTTATGGCGCACCACGGTTTCAGCCCCG
ACGGGCGCTGCGCCGTCCGTTTCGTCGACGACTCGGACCTCGCCTACGTC
TTGACGCGCTACCGCCAAGTCCATGACTTCTGGCACGTGCTCGCCGGCCT
GCCACCGACGGTGGAGGCCGAACTGGCGCTCAAGGTAGTCGAAATGGTGC
AGACGGGGTTGCCGGTCACCGCCTTGGCGGCCCTCTGCGGGCCGGCGGCG
CTGTCGGCGATCCAGCGGCGCCATTTTACACGCATCTACGTGCCGTGGGC
GCTCCGCGTCGGCCGGCGCGCGGCGCCGCTCATCAACATCTGGTACGAGC
GCCAGTGGGACGTGCCGCTGGAGGAGCTGCGGCGGACGCTGCGCTTCGAG
CCCGCCCCACCCGGCTGA
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