mRNA_P-wetherbeei_contig16619.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16619.1.1
Unique NamemRNA_P-wetherbeei_contig16619.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16619.1.1 vs. uniprot
Match: A0A7X5WLZ8_9ACTN (Cupin domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WLZ8_9ACTN)

HSP 1 Score: 171 bits (432), Expect = 5.240e-51
Identity = 79/170 (46.47%), Postives = 109/170 (64.12%), Query Frame = 1
Query:   22 RRVVTGHNPAGKSIVASDSTVNGVAVPGLAGVYLSTLWGADQPYNYPDNGGETAHPSWFPPIGGVRFIEFILAPDSTPADTSLSDDEIASAANKLFPGLLSHFNDEDPGMHRSASTDMLYVLSGRCVLELDDGSKTELNAGDVVVQSGTMHRWKNPWSEPCRVLGALVGA 531
            RRVVTGH+  GK++ ASDS V+ + +  L G  L  LWG D+P ++PD+G     P +FPP+GG RF  F + PDST     L  +   +   +  PG+ +H   ++PGMH +AS D  +++SGR VLELDDG   EL  GD VVQ+GT H W+NP+ EPC ++ AL+GA
Sbjct:    4 RRVVTGHDGDGKAVFASDSEVDPITIDLLPGFELLRLWGGDEPASFPDDGSHPPSPQYFPPLGGFRFGLFTVPPDSTGIPADLDVEAALAEMEERLPGMAAHMEPDNPGMHTTASVDFEFIVSGRVVLELDDGETKELGPGDTVVQNGTRHAWRNPFDEPCTMVVALIGA 173          
BLAST of mRNA_P-wetherbeei_contig16619.1.1 vs. uniprot
Match: A0A853BEJ0_9PSEU (Putative cupin superfamily protein n=1 Tax=Amycolatopsis endophytica TaxID=860233 RepID=A0A853BEJ0_9PSEU)

HSP 1 Score: 169 bits (428), Expect = 1.930e-50
Identity = 87/174 (50.00%), Postives = 112/174 (64.37%), Query Frame = 1
Query:   10 MSTFRRVVTGHNPAGKSIVASDSTVNGVAVPGLAGVYLSTLWGADQPYNYPDNGGETAHPSWFPPIGGVRFIEFILAPDSTPADTSLSDDEIASAANKLFPGLLSHFNDEDPGMHRSASTDMLYVLSGRCVLELDDGSKTELNAGDVVVQSGTMHRWKNPWSEPCRVLGALVGA 531
            M++ RR+VTGH+  G+S VA DS V     PGL GV +  LWGAD+P +YPD G E A    FPP+GG RF+ F L P  T    S   ++ ++ A + FPGLL  + +++PGMHRS +TD+  VLSG  VL LDDGS+  L AGD VVQ+GT H W N  +EP  +L  LVGA
Sbjct:    1 MTSRRRIVTGHDHDGRSTVAGDSVVEPRTSPGLPGVEMRYLWGADEPQSYPDGGTEPAWRRHFPPLGGFRFVSFTLPPAGTGEPVS---EQASAHAREAFPGLLETYREDEPGMHRSDTTDLAIVLSGEVVLGLDDGSEHVLRAGDTVVQNGTAHSWTNRNTEPAEMLFVLVGA 171          
BLAST of mRNA_P-wetherbeei_contig16619.1.1 vs. uniprot
Match: A0A1G6DSF6_9HYPH (Cupin domain-containing protein n=1 Tax=Bauldia litoralis TaxID=665467 RepID=A0A1G6DSF6_9HYPH)

HSP 1 Score: 163 bits (412), Expect = 5.980e-48
Identity = 73/171 (42.69%), Postives = 107/171 (62.57%), Query Frame = 1
Query:   19 FRRVVTGHNPAGKSIVASDSTVNGVAVPGLAGVYLSTLWGADQPYNYPDNGGETAHPSWFPPIGGVRFIEFILAPDSTPADTSLSDDEIASAANKLFPGLLSHFNDEDPGMHRSASTDMLYVLSGRCVLELDDGSKTELNAGDVVVQSGTMHRWKNPWSEPCRVLGALVGA 531
             RRVVTG +P GK+++ASD+ +    +  + G    ++WGAD P   P +G +  + +WFPP  G R  +  + P STP    L   E A+  N+  PGLL H + + PGMHR+ + D++YV+SGRCV+EL+ G  T+L  GD+++Q+GT H W+ P+ EPC VL   VGA
Sbjct:    6 IRRVVTGTSPDGKAMIASDTVLESDGIAMMPGAGFVSIWGADGPQTLPTSGEKPDYTTWFPPAAGYRVEQITIPPSSTPPTPDLDMAEAAAEMNRKLPGLLEHMDPKHPGMHRTDTIDVVYVMSGRCVVELEGGETTDLGPGDILIQNGTRHAWRVPYDEPCTVLSISVGA 176          
BLAST of mRNA_P-wetherbeei_contig16619.1.1 vs. uniprot
Match: A0A351EPC5_9ACTN (Cupin domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A351EPC5_9ACTN)

HSP 1 Score: 162 bits (410), Expect = 1.240e-47
Identity = 77/171 (45.03%), Postives = 103/171 (60.23%), Query Frame = 1
Query:   19 FRRVVTGHNPAGKSIVASDSTVNGVAVPGLAGVYLSTLWGADQPYNYPDNGGETAHPSWFPPIGGVRFIEFILAPDSTPADTSLSDDEIASAANKLFPGLLSHFNDEDPGMHRSASTDMLYVLSGRCVLELDDGSKTELNAGDVVVQSGTMHRWKNPWSEPCRVLGALVGA 531
             RRVVTGHN +GK+I ASD  +    +  + G     LWG+D    YPD+GG    P +FP   G RF  F +APD+T     L  +   +   +  PG+  H   E+PGMH +++ D  Y++SGRCVLELDDG+  EL AGD VVQSGT H W+NP+ EPC ++  L+ A
Sbjct:    3 IRRVVTGHNESGKAIFASDEVIEPTTLALVPGAEFFQLWGSDDRMRYPDDGGRPNAPMYFPGPQGFRFGVFTVAPDATVFTEDLDIEAALAEMEEKLPGMAGHMEPENPGMHTTSTIDYEYIVSGRCVLELDDGATKELAAGDTVVQSGTRHAWRNPYDEPCVLVAVLIAA 173          
BLAST of mRNA_P-wetherbeei_contig16619.1.1 vs. uniprot
Match: A0A524NM39_9DELT (Cupin domain-containing protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A524NM39_9DELT)

HSP 1 Score: 150 bits (378), Expect = 8.360e-43
Identity = 70/174 (40.23%), Postives = 100/174 (57.47%), Query Frame = 1
Query:   22 RRVVTGHNPAGKSIVASDSTVNGVAVPGLAGVYLSTLWGADQPYNYPDNGGETAHPSWFPPIGGVRFIEFILAPDSTPADTSLSDDEIASAANKLFPGLLSHFNDEDPGMHRSASTDMLYVLSGRCVLELDDGSKTELNAGDVVVQSGTMHRWKNPWSEPCRVLGALVGAHLKK 543
            RRVVTGH   GK++  SD  V+ + +  L G     LW +D P   P +G   A   +FPP+GG R   F + PD+T        +++ +       GL  H   ++PGMH + + D  YV+SGRCVLELDDGS  E+  GD +VQ+GT HRW+NP+   CR++  +VGA  ++
Sbjct:    4 RRVVTGHAKDGKAVFVSDEDVDSIDLTTLPGSVYHRLWASDLPVRLPGDGSPPAMAKYFPPVGGFRVWMFTVPPDATRPPQGTRTEDVHAELEAKLTGLAEHLERDEPGMHTTDTVDFEYVISGRCVLELDDGSTAEVGPGDTIVQNGTRHRWRNPFDVTCRMIVFIVGAEREE 177          
BLAST of mRNA_P-wetherbeei_contig16619.1.1 vs. uniprot
Match: A0A6C0TZV1_9GAMM (Cupin domain-containing protein n=1 Tax=Kineobactrum salinum TaxID=2708301 RepID=A0A6C0TZV1_9GAMM)

HSP 1 Score: 149 bits (376), Expect = 2.330e-42
Identity = 78/175 (44.57%), Postives = 110/175 (62.86%), Query Frame = 1
Query:   22 RRVVTGHNPAGKSIVASDSTVNGVAVPGLAGVYLSTLWGADQPYNYPDNGGETAHPSWFPPIGGVRFIEFILAPDSTPADTSLSDDEIA--SAANKL---FPGLLSHFNDEDPGMHRSASTDMLYVLSGRCVLELDDGSKTELNAGDVVVQSGTMHRWKNPWSEPCRVLGALVGA 531
            RRVVTGHN   +S VASD+ + G  VPG+ G  +   WGAD+   YPD+G E  +  ++P  GG R +E  + PD T A+T+L +D  A  +A  +L    PGL +  + EDPGMHR+A+ DM+ ++ G+C+L LD+  +  L  GD+V+QSGT H W NP+  PCR L   +GA
Sbjct:   13 RRVVTGHNAENRSCVASDTALFGEDVPGMPGNVVIRFWGADKEMVYPDSGDEPQYAGFYPNRGGFRCLECSIPPD-TVAETALVNDAGADETALGELETKMPGLATVMSGEDPGMHRTATVDMVLIVDGQCILRLDE-EEVALGVGDLVIQSGTRHAWGNPYDRPCRFLAVTIGA 185          
BLAST of mRNA_P-wetherbeei_contig16619.1.1 vs. uniprot
Match: K0UVZ3_MYCVA (Cupin n=2 Tax=Mycobacteriaceae TaxID=1762 RepID=K0UVZ3_MYCVA)

HSP 1 Score: 147 bits (372), Expect = 8.810e-42
Identity = 76/174 (43.68%), Postives = 101/174 (58.05%), Query Frame = 1
Query:   19 FRRVVTGHNPAGKSIVASDSTVNGVAVPGLAGVYLSTLWGADQPYNYPDNGGETAHPSWFPPIGGVRFIEFILAPDSTPADT--SLSDDEIASAANKLFPGLLSHFNDEDPGMHRSASTDMLYVLSGRCVLELDDGSKTELNAGDVVVQSGTMHRWKNPWSEPCRVLGALVGAH 534
             RRVVTGH+P+GKS+  SD  V       L G   + LWG D+   +PD+G      ++FPP+GG RF  F L P ST       L  +E  + A +  PGLL++ +  DPGMH + + D   VL G  +LELDDG++  L  GD VVQ+GT HRW+NP   P R+   +VGAH
Sbjct:    3 IRRVVTGHDPSGKSVFVSDEKVAPREPVLLPGSEFTLLWGGDEAPRFPDDGAMPNWHTYFPPVGGFRFSMFTLPPHSTATGEPEQLDAEEALADAEEKLPGLLAYMDPSDPGMHTTDTIDFEVVLEGTVILELDDGAEVTLRPGDTVVQNGTRHRWRNPGDTPARLALFVVGAH 176          
BLAST of mRNA_P-wetherbeei_contig16619.1.1 vs. uniprot
Match: UPI000A52006B (cupin domain-containing protein n=1 Tax=Mycolicibacterium malmesburyense TaxID=1566886 RepID=UPI000A52006B)

HSP 1 Score: 145 bits (366), Expect = 5.780e-41
Identity = 73/171 (42.69%), Postives = 99/171 (57.89%), Query Frame = 1
Query:   22 RRVVTGHNPAGKSIVASDSTVNGVAVPGLAGVYLSTLWGADQPYNYPDNGGETAHPSWFPPIGGVRFIEFILAPD-STPADTSLSDDEIASAANKLFPGLLSHFNDEDPGMHRSASTDMLYVLSGRCVLELDDGSKTELNAGDVVVQSGTMHRWKNPWSEPCRVLGALVGA 531
            RRVVTGH+P+G+S+  SD  V  +    + G     LWG D+P  +PD+G      ++FPP+GG RF    L P   T A  +L  DE  +   +  PG+L + +  DPGMH + + D   VL G  VLELDDG++  L+ GD VVQ+GT HRWKNP   P R+   + GA
Sbjct:    4 RRVVTGHDPSGRSVFVSDDDVAPIETMLMPGFENHLLWGGDEPCRFPDDGSMPRWHNYFPPVGGFRFAMLTLPPSHGTEAPDALDIDEAMAEMEEKLPGMLGYMDYTDPGMHTTDTADFEVVLEGTVVLELDDGAEVTLHPGDAVVQNGTRHRWKNPGDTPARMAVFICGA 174          
BLAST of mRNA_P-wetherbeei_contig16619.1.1 vs. uniprot
Match: A0A6N0DQU8_9HYPH (Cupin domain-containing protein n=1 Tax=Methyloligella sp. GL2 TaxID=2742204 RepID=A0A6N0DQU8_9HYPH)

HSP 1 Score: 145 bits (365), Expect = 9.200e-41
Identity = 73/179 (40.78%), Postives = 98/179 (54.75%), Query Frame = 1
Query:    4 NSMSTFRRVVTGHNPAGKSIVASDSTVNGVAVPGLAGVYLSTLWGADQPYNYPDNGGETAHPSWFPPIGGVRFIEFILAPDSTPADTSLSDDEIASAANKLFPGLLSHFNDEDPGMHRSASTDMLYVLSGRCVLELDDGSKTELNAGDVVVQSGTMHRWKNPWSEPCRVLGALVGAHLK 540
            N     RRVVTG    G SIVASD+    + VP + G    +LWG+D     P++G       WFPP  G RF   +L PD T     +S         K  PGLL+  + ++PGMH + + D++YV SG C +EL DGSKT L+AGD +VQ+G  H W+NP   PC ++   +GA  K
Sbjct:    4 NPSRPIRRVVTGETADGASIVASDAEEPPIEVPLMPGAQFFSLWGSDAAPVLPNDGAAPDFTQWFPPETGFRFQVIVLPPDGTALKEKMSAAAAVVETQKRLPGLLAAMDPKNPGMHATDTIDLIYVASGACEMELADGSKTALSAGDAIVQNGARHAWRNPHEGPCTLINVSLGAARK 182          
BLAST of mRNA_P-wetherbeei_contig16619.1.1 vs. uniprot
Match: A0A2A5EGQ6_9BACT (Cupin n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A2A5EGQ6_9BACT)

HSP 1 Score: 144 bits (362), Expect = 1.890e-40
Identity = 73/174 (41.95%), Postives = 100/174 (57.47%), Query Frame = 1
Query:   19 FRRVVTGHNPAGKSIVASDSTVNGVAVPGLAGVYLSTLWGADQPYNYPDNGGETAHPSWFPPIGGVRFIEFILAPDSTPADTSLSDDEIASAANKLFPGLLSHFNDEDPGMHRSASTDMLYVLSGRCVLELDDGSKTELNAGDVVVQSGTMHRWKNPWSEPCRVLGALVGAHLK 540
             RRVVTGH+  GKS++ SDS + G+++ G  G     LWG D    +PDNG       WFP  GG RF  +++ P +T +D   S  EI    + L PG L HF  ++PGMH + S D  Y++SG  +LELDD  + ELN GD +VQ+GT HRW N    P  ++   +G+  K
Sbjct:    8 IRRVVTGHSEEGKSVIISDSIIEGISLGG--GKDFIQLWGKDSITVHPDNGLMEEKMDWFPEAGGHRFFVWVVPPKTTNSDGQKSKAEI----DALLPGFLGHFEQDNPGMHTTNSVDCTYLISGSIILELDDNKEVELNEGDSIVQNGTRHRWHNRGEIPAVLITTCIGSERK 175          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16619.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X5WLZ8_9ACTN5.240e-5146.47Cupin domain-containing protein n=1 Tax=Actinomyce... [more]
A0A853BEJ0_9PSEU1.930e-5050.00Putative cupin superfamily protein n=1 Tax=Amycola... [more]
A0A1G6DSF6_9HYPH5.980e-4842.69Cupin domain-containing protein n=1 Tax=Bauldia li... [more]
A0A351EPC5_9ACTN1.240e-4745.03Cupin domain-containing protein n=1 Tax=Acidimicro... [more]
A0A524NM39_9DELT8.360e-4340.23Cupin domain-containing protein n=1 Tax=Myxococcal... [more]
A0A6C0TZV1_9GAMM2.330e-4244.57Cupin domain-containing protein n=1 Tax=Kineobactr... [more]
K0UVZ3_MYCVA8.810e-4243.68Cupin n=2 Tax=Mycobacteriaceae TaxID=1762 RepID=K0... [more]
UPI000A52006B5.780e-4142.69cupin domain-containing protein n=1 Tax=Mycoliciba... [more]
A0A6N0DQU8_9HYPH9.200e-4140.78Cupin domain-containing protein n=1 Tax=Methylolig... [more]
A0A2A5EGQ6_9BACT1.890e-4041.95Cupin n=1 Tax=Bacteroidetes bacterium TaxID=189810... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16619contigP-wetherbeei_contig16619:589..1134 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1194972.MVAC_12718
PFAMsCupin_2
Model size546
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.3e-42
EggNOG OGsCOG0662@1|root,COG0662@2|Bacteria,2I41N@201174|Actinobacteria,2380V@1762|Mycobacteriaceae
DescriptionCupin domain
Cds size537
COG categoryG
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186092.1669111-UTR-P-wetherbeei_contig16619:588..5971683186092.1669111-UTR-P-wetherbeei_contig16619:588..597Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16619 589..597 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186092.1800923-CDS-P-wetherbeei_contig16619:597..11341683186092.1800923-CDS-P-wetherbeei_contig16619:597..1134Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16619 598..1134 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16619.1.1prot_P-wetherbeei_contig16619.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16619 598..1134 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16619.1.1

>prot_P-wetherbeei_contig16619.1.1 ID=prot_P-wetherbeei_contig16619.1.1|Name=mRNA_P-wetherbeei_contig16619.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=179bp
MSTFRRVVTGHNPAGKSIVASDSTVNGVAVPGLAGVYLSTLWGADQPYNY
PDNGGETAHPSWFPPIGGVRFIEFILAPDSTPADTSLSDDEIASAANKLF
PGLLSHFNDEDPGMHRSASTDMLYVLSGRCVLELDDGSKTELNAGDVVVQ
SGTMHRWKNPWSEPCRVLGALVGAHLKK*
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mRNA from alignment at P-wetherbeei_contig16619:589..1134+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16619.1.1 ID=mRNA_P-wetherbeei_contig16619.1.1|Name=mRNA_P-wetherbeei_contig16619.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=546bp|location=Sequence derived from alignment at P-wetherbeei_contig16619:589..1134+ (Phaeothamnion wetherbeei SAG_119_79)
GAGAATTCCATGTCGACATTTCGTCGTGTAGTGACCGGCCATAATCCGGC CGGCAAATCCATCGTTGCGAGCGACAGTACAGTCAACGGCGTTGCGGTGC CTGGCCTGGCCGGCGTCTATCTCTCGACCCTGTGGGGTGCCGACCAGCCG TATAACTATCCGGACAATGGCGGAGAAACGGCACATCCGAGCTGGTTCCC GCCTATCGGTGGCGTGCGCTTCATCGAATTCATCCTCGCCCCCGACAGCA CGCCGGCAGACACCAGCCTGTCCGACGACGAGATAGCGAGCGCTGCCAAC AAACTCTTCCCCGGCCTGCTCTCGCACTTCAACGACGAAGACCCGGGTAT GCATCGTTCCGCCAGCACCGACATGCTCTACGTGCTGTCGGGCCGCTGCG TGCTGGAACTGGATGACGGTTCGAAGACGGAGCTGAATGCCGGCGACGTG GTAGTACAGAGCGGCACCATGCACCGCTGGAAGAATCCCTGGAGCGAACC CTGCCGCGTGCTCGGTGCGCTGGTCGGCGCTCACCTGAAGAAGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16619:589..1134+

>mRNA_P-wetherbeei_contig16619.1.1 ID=mRNA_P-wetherbeei_contig16619.1.1|Name=mRNA_P-wetherbeei_contig16619.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=537bp|location=Sequence derived from alignment at P-wetherbeei_contig16619:589..1134+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGACATTTCGTCGTGTAGTGACCGGCCATAATCCGGCCGGCAAATC
CATCGTTGCGAGCGACAGTACAGTCAACGGCGTTGCGGTGCCTGGCCTGG
CCGGCGTCTATCTCTCGACCCTGTGGGGTGCCGACCAGCCGTATAACTAT
CCGGACAATGGCGGAGAAACGGCACATCCGAGCTGGTTCCCGCCTATCGG
TGGCGTGCGCTTCATCGAATTCATCCTCGCCCCCGACAGCACGCCGGCAG
ACACCAGCCTGTCCGACGACGAGATAGCGAGCGCTGCCAACAAACTCTTC
CCCGGCCTGCTCTCGCACTTCAACGACGAAGACCCGGGTATGCATCGTTC
CGCCAGCACCGACATGCTCTACGTGCTGTCGGGCCGCTGCGTGCTGGAAC
TGGATGACGGTTCGAAGACGGAGCTGAATGCCGGCGACGTGGTAGTACAG
AGCGGCACCATGCACCGCTGGAAGAATCCCTGGAGCGAACCCTGCCGCGT
GCTCGGTGCGCTGGTCGGCGCTCACCTGAAGAAGTAG
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