mRNA_P-wetherbeei_contig16444.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig16444.2.1 vs. uniprot
Match: A0A0V1AQA8_TRISP (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trichinella spiralis TaxID=6334 RepID=A0A0V1AQA8_TRISP) HSP 1 Score: 58.5 bits (140), Expect = 3.110e-8 Identity = 30/72 (41.67%), Postives = 45/72 (62.50%), Query Frame = 1
Query: 1 ETLQTKDLGQVHNRLGLVIKQDLANGTVHLSQQHYIDELLDRFRMQEAWPVLTPAERGVVLTLSMAPAMPAE 216
++ + KD+G +H LG+ IKQ ANG + +SQQ YI ++L+RF+M + PV TP + L+ M P AE
Sbjct: 482 KSFEMKDMGPIHYCLGIEIKQS-ANGDIEMSQQKYIMDILERFKMMNSKPVETPIDASNKLSTEMCPRTEAE 552
BLAST of mRNA_P-wetherbeei_contig16444.2.1 vs. uniprot
Match: UPI0001EFEB10 (putative integrase core domain protein n=1 Tax=Trichinella spiralis TaxID=6334 RepID=UPI0001EFEB10) HSP 1 Score: 58.5 bits (140), Expect = 3.200e-8 Identity = 30/72 (41.67%), Postives = 45/72 (62.50%), Query Frame = 1
Query: 1 ETLQTKDLGQVHNRLGLVIKQDLANGTVHLSQQHYIDELLDRFRMQEAWPVLTPAERGVVLTLSMAPAMPAE 216
++ + KD+G +H LG+ IKQ ANG + +SQQ YI ++L+RF+M + PV TP + L+ M P AE
Sbjct: 3173 KSFEMKDMGPIHYCLGIEIKQS-ANGDIEMSQQKYIMDILERFKMMNSKPVETPIDASNKLSTEMCPRTEAE 3243
BLAST of mRNA_P-wetherbeei_contig16444.2.1 vs. uniprot
Match: A0A182GR78_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GR78_AEDAL) HSP 1 Score: 58.2 bits (139), Expect = 3.850e-8 Identity = 29/67 (43.28%), Postives = 43/67 (64.18%), Query Frame = 1
Query: 1 ETLQTKDLGQVHNRLGLVIKQDLANGTVHLSQQHYIDELLDRFRMQEAWPVLTPAERGVVLTLSMAP 201
+ + KDLG + LG+ IK++ G + L QQ YI+E++ RF M+ A+ + TPA+ GV L SMAP
Sbjct: 36 QNFKMKDLGPATHCLGIRIKRNRREGKLSLDQQAYIEEIVRRFGMENAYSIATPADSGVRLEKSMAP 102
BLAST of mRNA_P-wetherbeei_contig16444.2.1 vs. uniprot
Match: A0A2P4WXZ4_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WXZ4_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 5.590e-8 Identity = 25/56 (44.64%), Postives = 42/56 (75.00%), Query Frame = 1
Query: 16 KDLGQVHNRLGLVIKQDLANGTVHLSQQHYIDELLDRFRMQEAWPVLTPAERGVVL 183
+DLG+++ + + IK+DL T++LSQQ YI++LLD+F+M++ PV TP + V+L
Sbjct: 56 RDLGELYYLIKMEIKRDLERNTLNLSQQKYINDLLDKFQMRDCTPVPTPQAKRVIL 111
BLAST of mRNA_P-wetherbeei_contig16444.2.1 vs. uniprot
Match: A0A4Y2CJC1_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2CJC1_ARAVE) HSP 1 Score: 57.8 bits (138), Expect = 5.760e-8 Identity = 29/67 (43.28%), Postives = 43/67 (64.18%), Query Frame = 1
Query: 16 KDLGQVHNRLGLVIKQDLANGTVHLSQQHYIDELLDRFRMQEAWPVLTPAERGVVLTLSMAPAMPAE 216
KDLG+++ LG+ KQ++ NG + +SQ YI+ +L++F MQ+A V TP + V LT M P AE
Sbjct: 454 KDLGKLNFCLGIEFKQNVKNGQITMSQSKYIENVLEKFNMQDAKTVKTPLDPSVKLTKEMCPKTEAE 520
BLAST of mRNA_P-wetherbeei_contig16444.2.1 vs. uniprot
Match: A0A6H5KRT7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRT7_9PHAE) HSP 1 Score: 56.2 bits (134), Expect = 9.170e-8 Identity = 25/62 (40.32%), Postives = 40/62 (64.52%), Query Frame = 1
Query: 1 ETLQTKDLGQVHNRLGLVIKQDLANGTVHLSQQHYIDELLDRFRMQEAWPVLTPAERGVVLT 186
+ + D+G+V LG+ +++D GT+ +SQ+HY++ LL+RF MQEA PV TP + T
Sbjct: 79 DRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNALLERFGMQEANPVSTPGYGAEIYT 140
BLAST of mRNA_P-wetherbeei_contig16444.2.1 vs. uniprot
Match: A0A151RRK3_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RRK3_CAJCA) HSP 1 Score: 57.0 bits (136), Expect = 1.100e-7 Identity = 27/67 (40.30%), Postives = 45/67 (67.16%), Query Frame = 1
Query: 1 ETLQTKDLGQVHNRLGLVIKQDLANGTVHLSQQHYIDELLDRFRMQEAWPVLTPAERGVVLTLSMAP 201
+ L+ KDLG+ + LG+ I +D ++G + LSQ++YID++LDRF M++ P TP +G +L+ P
Sbjct: 740 KNLEMKDLGETYFVLGIKILRDCSHGIIRLSQENYIDKVLDRFDMKDNKPRDTPIAKGDKFSLTQCP 806
BLAST of mRNA_P-wetherbeei_contig16444.2.1 vs. uniprot
Match: A0A0V0W267_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella sp. T6 TaxID=92179 RepID=A0A0V0W267_9BILA) HSP 1 Score: 56.6 bits (135), Expect = 1.510e-7 Identity = 27/67 (40.30%), Postives = 44/67 (65.67%), Query Frame = 1
Query: 1 ETLQTKDLGQVHNRLGLVIKQDLANGTVHLSQQHYIDELLDRFRMQEAWPVLTPAERGVVLTLSMAP 201
++ + +D+G +H LG+ IKQ ANG + +SQQ+YI ++L+RFR+ + PV TP + L+ M P
Sbjct: 604 KSFEMEDIGPIHYCLGIEIKQS-ANGDIEMSQQNYIMDILERFRIMNSKPVETPIDASSKLSAEMCP 669
BLAST of mRNA_P-wetherbeei_contig16444.2.1 vs. uniprot
Match: A0A6H5KXR0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXR0_9PHAE) HSP 1 Score: 55.8 bits (133), Expect = 2.160e-7 Identity = 25/62 (40.32%), Postives = 40/62 (64.52%), Query Frame = 1
Query: 1 ETLQTKDLGQVHNRLGLVIKQDLANGTVHLSQQHYIDELLDRFRMQEAWPVLTPAERGVVLT 186
+ + D+G+V LG+ +++D GT+ +SQ+HY++ LL+RF MQEA PV TP + T
Sbjct: 193 DRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEIST 254
BLAST of mRNA_P-wetherbeei_contig16444.2.1 vs. uniprot
Match: A0A6H5KAK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK0_9PHAE) HSP 1 Score: 55.8 bits (133), Expect = 2.250e-7 Identity = 25/62 (40.32%), Postives = 40/62 (64.52%), Query Frame = 1
Query: 1 ETLQTKDLGQVHNRLGLVIKQDLANGTVHLSQQHYIDELLDRFRMQEAWPVLTPAERGVVLT 186
+ + D+G+V LG+ +++D GT+ +SQ+HY++ LL+RF MQEA PV TP + T
Sbjct: 79 DRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEIST 140 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16444.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig16444.2.1 >prot_P-wetherbeei_contig16444.2.1 ID=prot_P-wetherbeei_contig16444.2.1|Name=mRNA_P-wetherbeei_contig16444.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=76bp ETLQTKDLGQVHNRLGLVIKQDLANGTVHLSQQHYIDELLDRFRMQEAWPback to top mRNA from alignment at P-wetherbeei_contig16444:269..496- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig16444.2.1 ID=mRNA_P-wetherbeei_contig16444.2.1|Name=mRNA_P-wetherbeei_contig16444.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=228bp|location=Sequence derived from alignment at P-wetherbeei_contig16444:269..496- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig16444:269..496- >mRNA_P-wetherbeei_contig16444.2.1 ID=mRNA_P-wetherbeei_contig16444.2.1|Name=mRNA_P-wetherbeei_contig16444.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=228bp|location=Sequence derived from alignment at P-wetherbeei_contig16444:269..496- (Phaeothamnion wetherbeei SAG_119_79)back to top |