mRNA_P-wetherbeei_contig16444.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16444.2.1
Unique NamemRNA_P-wetherbeei_contig16444.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16444.2.1 vs. uniprot
Match: A0A0V1AQA8_TRISP (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trichinella spiralis TaxID=6334 RepID=A0A0V1AQA8_TRISP)

HSP 1 Score: 58.5 bits (140), Expect = 3.110e-8
Identity = 30/72 (41.67%), Postives = 45/72 (62.50%), Query Frame = 1
Query:    1 ETLQTKDLGQVHNRLGLVIKQDLANGTVHLSQQHYIDELLDRFRMQEAWPVLTPAERGVVLTLSMAPAMPAE 216
            ++ + KD+G +H  LG+ IKQ  ANG + +SQQ YI ++L+RF+M  + PV TP +    L+  M P   AE
Sbjct:  482 KSFEMKDMGPIHYCLGIEIKQS-ANGDIEMSQQKYIMDILERFKMMNSKPVETPIDASNKLSTEMCPRTEAE 552          
BLAST of mRNA_P-wetherbeei_contig16444.2.1 vs. uniprot
Match: UPI0001EFEB10 (putative integrase core domain protein n=1 Tax=Trichinella spiralis TaxID=6334 RepID=UPI0001EFEB10)

HSP 1 Score: 58.5 bits (140), Expect = 3.200e-8
Identity = 30/72 (41.67%), Postives = 45/72 (62.50%), Query Frame = 1
Query:    1 ETLQTKDLGQVHNRLGLVIKQDLANGTVHLSQQHYIDELLDRFRMQEAWPVLTPAERGVVLTLSMAPAMPAE 216
            ++ + KD+G +H  LG+ IKQ  ANG + +SQQ YI ++L+RF+M  + PV TP +    L+  M P   AE
Sbjct: 3173 KSFEMKDMGPIHYCLGIEIKQS-ANGDIEMSQQKYIMDILERFKMMNSKPVETPIDASNKLSTEMCPRTEAE 3243          
BLAST of mRNA_P-wetherbeei_contig16444.2.1 vs. uniprot
Match: A0A182GR78_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GR78_AEDAL)

HSP 1 Score: 58.2 bits (139), Expect = 3.850e-8
Identity = 29/67 (43.28%), Postives = 43/67 (64.18%), Query Frame = 1
Query:    1 ETLQTKDLGQVHNRLGLVIKQDLANGTVHLSQQHYIDELLDRFRMQEAWPVLTPAERGVVLTLSMAP 201
            +  + KDLG   + LG+ IK++   G + L QQ YI+E++ RF M+ A+ + TPA+ GV L  SMAP
Sbjct:   36 QNFKMKDLGPATHCLGIRIKRNRREGKLSLDQQAYIEEIVRRFGMENAYSIATPADSGVRLEKSMAP 102          
BLAST of mRNA_P-wetherbeei_contig16444.2.1 vs. uniprot
Match: A0A2P4WXZ4_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WXZ4_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 5.590e-8
Identity = 25/56 (44.64%), Postives = 42/56 (75.00%), Query Frame = 1
Query:   16 KDLGQVHNRLGLVIKQDLANGTVHLSQQHYIDELLDRFRMQEAWPVLTPAERGVVL 183
            +DLG+++  + + IK+DL   T++LSQQ YI++LLD+F+M++  PV TP  + V+L
Sbjct:   56 RDLGELYYLIKMEIKRDLERNTLNLSQQKYINDLLDKFQMRDCTPVPTPQAKRVIL 111          
BLAST of mRNA_P-wetherbeei_contig16444.2.1 vs. uniprot
Match: A0A4Y2CJC1_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2CJC1_ARAVE)

HSP 1 Score: 57.8 bits (138), Expect = 5.760e-8
Identity = 29/67 (43.28%), Postives = 43/67 (64.18%), Query Frame = 1
Query:   16 KDLGQVHNRLGLVIKQDLANGTVHLSQQHYIDELLDRFRMQEAWPVLTPAERGVVLTLSMAPAMPAE 216
            KDLG+++  LG+  KQ++ NG + +SQ  YI+ +L++F MQ+A  V TP +  V LT  M P   AE
Sbjct:  454 KDLGKLNFCLGIEFKQNVKNGQITMSQSKYIENVLEKFNMQDAKTVKTPLDPSVKLTKEMCPKTEAE 520          
BLAST of mRNA_P-wetherbeei_contig16444.2.1 vs. uniprot
Match: A0A6H5KRT7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRT7_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 9.170e-8
Identity = 25/62 (40.32%), Postives = 40/62 (64.52%), Query Frame = 1
Query:    1 ETLQTKDLGQVHNRLGLVIKQDLANGTVHLSQQHYIDELLDRFRMQEAWPVLTPAERGVVLT 186
            +  +  D+G+V   LG+ +++D   GT+ +SQ+HY++ LL+RF MQEA PV TP     + T
Sbjct:   79 DRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNALLERFGMQEANPVSTPGYGAEIYT 140          
BLAST of mRNA_P-wetherbeei_contig16444.2.1 vs. uniprot
Match: A0A151RRK3_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RRK3_CAJCA)

HSP 1 Score: 57.0 bits (136), Expect = 1.100e-7
Identity = 27/67 (40.30%), Postives = 45/67 (67.16%), Query Frame = 1
Query:    1 ETLQTKDLGQVHNRLGLVIKQDLANGTVHLSQQHYIDELLDRFRMQEAWPVLTPAERGVVLTLSMAP 201
            + L+ KDLG+ +  LG+ I +D ++G + LSQ++YID++LDRF M++  P  TP  +G   +L+  P
Sbjct:  740 KNLEMKDLGETYFVLGIKILRDCSHGIIRLSQENYIDKVLDRFDMKDNKPRDTPIAKGDKFSLTQCP 806          
BLAST of mRNA_P-wetherbeei_contig16444.2.1 vs. uniprot
Match: A0A0V0W267_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella sp. T6 TaxID=92179 RepID=A0A0V0W267_9BILA)

HSP 1 Score: 56.6 bits (135), Expect = 1.510e-7
Identity = 27/67 (40.30%), Postives = 44/67 (65.67%), Query Frame = 1
Query:    1 ETLQTKDLGQVHNRLGLVIKQDLANGTVHLSQQHYIDELLDRFRMQEAWPVLTPAERGVVLTLSMAP 201
            ++ + +D+G +H  LG+ IKQ  ANG + +SQQ+YI ++L+RFR+  + PV TP +    L+  M P
Sbjct:  604 KSFEMEDIGPIHYCLGIEIKQS-ANGDIEMSQQNYIMDILERFRIMNSKPVETPIDASSKLSAEMCP 669          
BLAST of mRNA_P-wetherbeei_contig16444.2.1 vs. uniprot
Match: A0A6H5KXR0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXR0_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 2.160e-7
Identity = 25/62 (40.32%), Postives = 40/62 (64.52%), Query Frame = 1
Query:    1 ETLQTKDLGQVHNRLGLVIKQDLANGTVHLSQQHYIDELLDRFRMQEAWPVLTPAERGVVLT 186
            +  +  D+G+V   LG+ +++D   GT+ +SQ+HY++ LL+RF MQEA PV TP     + T
Sbjct:  193 DRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEIST 254          
BLAST of mRNA_P-wetherbeei_contig16444.2.1 vs. uniprot
Match: A0A6H5KAK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK0_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 2.250e-7
Identity = 25/62 (40.32%), Postives = 40/62 (64.52%), Query Frame = 1
Query:    1 ETLQTKDLGQVHNRLGLVIKQDLANGTVHLSQQHYIDELLDRFRMQEAWPVLTPAERGVVLT 186
            +  +  D+G+V   LG+ +++D   GT+ +SQ+HY++ LL+RF MQEA PV TP     + T
Sbjct:   79 DRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEIST 140          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16444.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0V1AQA8_TRISP3.110e-841.67Retrovirus-related Pol polyprotein from transposon... [more]
UPI0001EFEB103.200e-841.67putative integrase core domain protein n=1 Tax=Tri... [more]
A0A182GR78_AEDAL3.850e-843.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2P4WXZ4_9STRA5.590e-844.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Y2CJC1_ARAVE5.760e-843.28Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5KRT7_9PHAE9.170e-840.32Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A151RRK3_CAJCA1.100e-740.30Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V0W267_9BILA1.510e-740.30Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5KXR0_9PHAE2.160e-740.32Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KAK0_9PHAE2.250e-740.32Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16444contigP-wetherbeei_contig16444:269..496 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog6334.EFV57947
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size228
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.28e-10
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BI7U@33208|Metazoa,3CTS1@33213|Bilateria
DescriptionEncoded by
Cds size228
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186087.3839831-CDS-P-wetherbeei_contig16444:268..4961683186087.3839831-CDS-P-wetherbeei_contig16444:268..496Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16444 269..496 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16444.2.1prot_P-wetherbeei_contig16444.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16444 269..496 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16444.2.1

>prot_P-wetherbeei_contig16444.2.1 ID=prot_P-wetherbeei_contig16444.2.1|Name=mRNA_P-wetherbeei_contig16444.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=76bp
ETLQTKDLGQVHNRLGLVIKQDLANGTVHLSQQHYIDELLDRFRMQEAWP
VLTPAERGVVLTLSMAPAMPAEISAM
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mRNA from alignment at P-wetherbeei_contig16444:269..496-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16444.2.1 ID=mRNA_P-wetherbeei_contig16444.2.1|Name=mRNA_P-wetherbeei_contig16444.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=228bp|location=Sequence derived from alignment at P-wetherbeei_contig16444:269..496- (Phaeothamnion wetherbeei SAG_119_79)
GAAACGCTTCAGACGAAGGACCTAGGCCAAGTGCACAACCGTCTCGGCCT AGTGATCAAGCAGGACCTCGCCAACGGCACGGTGCATCTCTCGCAGCAGC ATTACATTGACGAGCTGCTGGATCGCTTCCGAATGCAGGAGGCATGGCCG GTCCTGACGCCGGCGGAGCGTGGCGTAGTACTGACGTTGTCTATGGCACC TGCGATGCCGGCCGAGATTTCTGCCATG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16444:269..496-

>mRNA_P-wetherbeei_contig16444.2.1 ID=mRNA_P-wetherbeei_contig16444.2.1|Name=mRNA_P-wetherbeei_contig16444.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=228bp|location=Sequence derived from alignment at P-wetherbeei_contig16444:269..496- (Phaeothamnion wetherbeei SAG_119_79)
GAAACGCTTCAGACGAAGGACCTAGGCCAAGTGCACAACCGTCTCGGCCT
AGTGATCAAGCAGGACCTCGCCAACGGCACGGTGCATCTCTCGCAGCAGC
ATTACATTGACGAGCTGCTGGATCGCTTCCGAATGCAGGAGGCATGGCCG
GTCCTGACGCCGGCGGAGCGTGGCGTAGTACTGACGTTGTCTATGGCACC
TGCGATGCCGGCCGAGATTTCTGCCATG
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