mRNA_P-wetherbeei_contig16299.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16299.1.1
Unique NamemRNA_P-wetherbeei_contig16299.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16299.1.1 vs. uniprot
Match: A0A835ZNU0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZNU0_9STRA)

HSP 1 Score: 194 bits (492), Expect = 2.770e-61
Identity = 89/119 (74.79%), Postives = 105/119 (88.24%), Query Frame = 1
Query:   22 AAELPTQAARQQALYDLVYVERIPEEAKMSSGLLLPGKENPRMHVCKVISIGSGREGESGIVVPNAGIQPGDLVYVKDPWGIGPRDDEFSFRKFSFVKYQNICAVLPNSRRFEDDARAA 378
            A ELP++A RQQALYD+VYVER+PE  +M+SGL LPGKENPRMHVCK++S+G GREGESG +V NAG++PGDLVYVKDPWGIGP+DDEFS  KFSFV+YQNICAV+PNS  +E  ARAA
Sbjct:    2 AVELPSKAVRQQALYDMVYVERLPEAQQMTSGLFLPGKENPRMHVCKIVSLGQGREGESGTLVENAGLKPGDLVYVKDPWGIGPKDDEFSNHKFSFVRYQNICAVIPNSDAYEASARAA 120          
BLAST of mRNA_P-wetherbeei_contig16299.1.1 vs. uniprot
Match: A0A6H5L438_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L438_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 4.970e-60
Identity = 93/133 (69.92%), Postives = 114/133 (85.71%), Query Frame = 1
Query:   13 MSAAAELPTQAARQQALYDLVYVERIPEEAKMSSGLLLPGKENPRMHVCKVISIGSGREGESGIVVPNAGIQPGDLVYVKDPWGIGPRDDEFSFRKFSFVKYQNICAVLPNSRRFEDDARAAAADKAAAERAA 411
            MSAAAELPTQA RQ+ALYD+VYVER+PEE +M+SGL LP K NPRMHVCKV+S+G+GREGESG V PN  ++PGDLV+VKDP+GIGPRDDEF+ +KFSFV+Y +ICAV+PNS+ FED AR A   +A  ++AA
Sbjct:   44 MSAAAELPTQAKRQKALYDMVYVERLPEEQQMTSGLFLPAKANPRMHVCKVVSVGNGREGESGHVTPNDAVKPGDLVFVKDPYGIGPRDDEFAGKKFSFVRYTSICAVIPNSQDFEDAAREAGKLQAEMDKAA 176          
BLAST of mRNA_P-wetherbeei_contig16299.1.1 vs. uniprot
Match: D7FXF3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXF3_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 1.180e-58
Identity = 92/133 (69.17%), Postives = 112/133 (84.21%), Query Frame = 1
Query:   13 MSAAAELPTQAARQQALYDLVYVERIPEEAKMSSGLLLPGKENPRMHVCKVISIGSGREGESGIVVPNAGIQPGDLVYVKDPWGIGPRDDEFSFRKFSFVKYQNICAVLPNSRRFEDDARAAAADKAAAERAA 411
            MSAAAELPTQA RQ+ALYD+VYVER+PEE +M+SGL LP K NPRMHVCKV+SIG+GREGESG V PN  ++ GDLV+VKDP+GIGPRDDEF+ +KFSFV+Y +ICAV+PNS  FE+ AR A   +A  ++AA
Sbjct:    1 MSAAAELPTQAQRQKALYDMVYVERLPEEQQMTSGLFLPAKANPRMHVCKVVSIGNGREGESGNVTPNDAVKQGDLVFVKDPYGIGPRDDEFAGKKFSFVRYTSICAVIPNSEDFENAAREAGKLQAEIDKAA 133          
BLAST of mRNA_P-wetherbeei_contig16299.1.1 vs. uniprot
Match: A0A6T5R4I0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5R4I0_HETAK)

HSP 1 Score: 134 bits (337), Expect = 4.460e-37
Identity = 58/104 (55.77%), Postives = 78/104 (75.00%), Query Frame = 1
Query:   28 ELPTQAARQQALYDLVYVERIPEEAKMSSGLLLPGKENPRMHVCKVISIGSGREGESGIVVPNAGIQPGDLVYVKDPWGIGPRDDEFSFRKFSFVKYQNICAVL 339
            ELP Q A+Q+ LY +VYVER+PE  + + GL LPG+ENPR H+C+V+S+G G EGESG V  + G+ PGD VYVK+PWGIG +D++F  RKFSF++Y  +C   
Sbjct:   42 ELP-QEAKQECLYGMVYVERLPEPVQTTGGLFLPGQENPRRHICRVVSVGPGVEGESGAVATSRGLAPGDYVYVKNPWGIGAKDEQFGRRKFSFLRYNEVCGTF 144          
BLAST of mRNA_P-wetherbeei_contig16299.1.1 vs. uniprot
Match: A0A8J2SZF1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZF1_9STRA)

HSP 1 Score: 120 bits (300), Expect = 5.240e-32
Identity = 57/101 (56.44%), Postives = 74/101 (73.27%), Query Frame = 1
Query:   49 RQQALYDLVYVERIPEEAKMSSGLLLPGKENPRMHVCKVISIGSGREGESGIVVPNAGIQPGDLVYVKDPWGIGPRDDEFSF----RKFSFVKYQNICAVL 339
            RQQALYDLVYVERI      + GL L   E+P MH+ KV+S+G+G +G SG+VV NAG++PGDLVY K PWGIGP+D+EF      R+FSF++Y +I  V+
Sbjct:   42 RQQALYDLVYVERIKPPETSAGGLFLVAPEDPPMHLAKVVSVGAGGQGNSGLVVENAGLKPGDLVYCKHPWGIGPKDEEFGEDGQERRFSFLRYTDIAGVV 142          
BLAST of mRNA_P-wetherbeei_contig16299.1.1 vs. uniprot
Match: A0A7S1UEZ3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UEZ3_9STRA)

HSP 1 Score: 111 bits (278), Expect = 3.900e-28
Identity = 49/105 (46.67%), Postives = 76/105 (72.38%), Query Frame = 1
Query:   31 LPTQAARQQALYDLVYVERIPEEAKMSSGLLLP--GKENPRMHVCKVISIGSGREGESGIVVPNAGIQPGDLVYVKDPWGIGPRDDEFSFRKFSFVKYQNICAVL 339
            +P +AA Q ALYD++YVER+ E+ + + G+ LP     N  +H+ +V+S+G GREGE+G+   N   + GD+V++++ WGIGPRD+EF  RKFSFV+ Q++CA +
Sbjct:   84 VPEEAAVQNALYDMIYVERLGEDTQSAGGVFLPTMSGSNQDLHMARVLSVGDGREGENGLRTMNGSYKEGDIVFLRNAWGIGPRDEEFRGRKFSFVREQDVCAHM 188          
BLAST of mRNA_P-wetherbeei_contig16299.1.1 vs. uniprot
Match: A0A7S1XW59_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XW59_9STRA)

HSP 1 Score: 111 bits (278), Expect = 6.490e-28
Identity = 49/105 (46.67%), Postives = 76/105 (72.38%), Query Frame = 1
Query:   31 LPTQAARQQALYDLVYVERIPEEAKMSSGLLLP--GKENPRMHVCKVISIGSGREGESGIVVPNAGIQPGDLVYVKDPWGIGPRDDEFSFRKFSFVKYQNICAVL 339
            +P +AA Q ALYD++YVER+ E+ + + G+ LP     N  +H+ +V+S+G GREGE+G+   N   + GD+V++++ WGIGPRD+EF  RKFSFV+ Q++CA +
Sbjct:  104 VPEEAAVQNALYDMIYVERLGEDTQSAGGVFLPTMSGSNQDLHMARVLSVGDGREGENGLRTMNGSYKEGDIVFLRNAWGIGPRDEEFRGRKFSFVREQDVCAHM 208          
BLAST of mRNA_P-wetherbeei_contig16299.1.1 vs. uniprot
Match: A0A7R9U985_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U985_9STRA)

HSP 1 Score: 110 bits (274), Expect = 9.930e-28
Identity = 52/116 (44.83%), Postives = 81/116 (69.83%), Query Frame = 1
Query:    1 RPLVMSAAAE-LPTQAARQQALYDLVYVERIPEEAKMSSGLLLPGKE--NPRMHVCKVISIGSGREGESGIVVPNAGIQPGDLVYVKDPWGIGPRDDEFSFRKFSFVKYQNICAVL 339
            RP+ +    E +P +A++Q ALYD+VYVER+ E+ + + G+ LP     N  +H+ +V+S+G GREGE+G    N   + GD+V++++ WGIGPRD+EF  RKFSFV+ Q++CA +
Sbjct:   55 RPMELRVTDEPVPEEASKQIALYDMVYVERLGEDQQSAGGVFLPKVSGGNQDLHMARVVSVGDGREGENGCKTMNGNYKQGDIVFLRNAWGIGPRDEEFFGRKFSFVREQDVCAHI 170          
BLAST of mRNA_P-wetherbeei_contig16299.1.1 vs. uniprot
Match: A0A7S1UZ75_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UZ75_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.750e-25
Identity = 46/102 (45.10%), Postives = 72/102 (70.59%), Query Frame = 1
Query:   64 YDLVYVERIPEEAKMSSGLLLPGKENPRMHVCKVISIGSGREGESGIVVPNAGIQPGDLVYVKDPWGIGPRDDEFSF-RKFSFVKYQNICAVLPNSRRFEDD 366
            YD+V  ERI  + K  SGL +P ++ P++H+CKV+S+G GRE E+G++ P   I+ GD+V  K+PWGIGP+D+E +  +K SF++  +I AV+P   + ED+
Sbjct:   61 YDMVLCERIQGKPKTESGLFVPQEDLPKLHICKVLSMGPGREEENGMIAPMPDIKVGDIVVAKNPWGIGPKDEETADGKKLSFMRALDIAAVIPGGMKIEDE 162          
BLAST of mRNA_P-wetherbeei_contig16299.1.1 vs. uniprot
Match: A0A7S1E0E1_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E0E1_9STRA)

HSP 1 Score: 101 bits (252), Expect = 4.650e-25
Identity = 46/93 (49.46%), Postives = 68/93 (73.12%), Query Frame = 1
Query:   64 YDLVYVERIPEEAKMSSGLLLPGKENPRMHVCKVISIGSGREGESGIVVPNAGIQPGDLVYVKDPWGIGPRDDEFSF-RKFSFVKYQNICAVL 339
            YD+V  ERI    KM SGL +P ++ P++H+CKV+S+G GRE E+G++ P   I+ GD+V  K+PWGIGP+D+E S  +K SF++ Q+I AV+
Sbjct:   18 YDMVLCERIQGRPKMESGLFVPDEDLPKLHICKVLSLGPGREEENGMIAPMPDIKVGDIVIAKNPWGIGPKDEETSDGKKLSFMRSQDIAAVV 110          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16299.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZNU0_9STRA2.770e-6174.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5L438_9PHAE4.970e-6069.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXF3_ECTSI1.180e-5869.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6T5R4I0_HETAK4.460e-3755.77Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8J2SZF1_9STRA5.240e-3256.44Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1UEZ3_9STRA3.900e-2846.67Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1XW59_9STRA6.490e-2846.67Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9U985_9STRA9.930e-2844.83Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1UZ75_9STRA2.750e-2545.10Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S1E0E1_9STRA4.650e-2549.46Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16299contigP-wetherbeei_contig16299:743..1323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FXF3
PFAMsCpn10
Model size442
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.27e-59
EggNOG OGs2E43F@1|root,2SB1V@2759|Eukaryota
Ec32 ortholog descriptionChaperonin Cpn10
Ec32 orthologEc-07_002990.1
DescriptionChaperonin 10 Kd subunit
Cds size408
COG categoryO
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186082.2310326-UTR-P-wetherbeei_contig16299:742..7541683186082.2310326-UTR-P-wetherbeei_contig16299:742..754Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16299 743..754 +
1683186082.2732368-UTR-P-wetherbeei_contig16299:1301..13231683186082.2732368-UTR-P-wetherbeei_contig16299:1301..1323Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16299 1302..1323 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186082.2416275-CDS-P-wetherbeei_contig16299:754..7841683186082.2416275-CDS-P-wetherbeei_contig16299:754..784Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16299 755..784 +
1683186082.2645488-CDS-P-wetherbeei_contig16299:923..13011683186082.2645488-CDS-P-wetherbeei_contig16299:923..1301Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16299 924..1301 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16299.1.1prot_P-wetherbeei_contig16299.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16299 755..1301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16299.1.1

>prot_P-wetherbeei_contig16299.1.1 ID=prot_P-wetherbeei_contig16299.1.1|Name=mRNA_P-wetherbeei_contig16299.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=136bp
MSAAAELPTQAARQQALYDLVYVERIPEEAKMSSGLLLPGKENPRMHVCK
VISIGSGREGESGIVVPNAGIQPGDLVYVKDPWGIGPRDDEFSFRKFSFV
KYQNICAVLPNSRRFEDDARAAAADKAAAERAAVL*
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mRNA from alignment at P-wetherbeei_contig16299:743..1323+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16299.1.1 ID=mRNA_P-wetherbeei_contig16299.1.1|Name=mRNA_P-wetherbeei_contig16299.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=581bp|location=Sequence derived from alignment at P-wetherbeei_contig16299:743..1323+ (Phaeothamnion wetherbeei SAG_119_79)
CGTCCTCTCGTCATGTCTGCGGCAGCAGAGCTCCCCACGCAGGTGATTCA GCAACTTTTTGTTTATTCGAAGAGGTGTGAACACGCCATTATCCGACGCG CGAGCTGCAAGGCGGCTAACATGAGAGGGGCTCTTCCTTTCCTTGTGTGT TGGCATGCCTTCGCACTCCCAACGACAACAGGCCGCAAGGCAGCAGGCCC TCTACGACCTCGTATACGTGGAGCGGATCCCGGAGGAGGCGAAGATGAGC AGCGGCCTGCTGCTGCCGGGGAAGGAGAACCCGCGGATGCATGTCTGCAA GGTGATCAGCATCGGCTCGGGCCGCGAGGGCGAGAGCGGCATCGTCGTGC CCAACGCGGGCATCCAGCCGGGGGACCTCGTCTACGTCAAGGACCCGTGG GGTATCGGCCCCCGGGACGACGAGTTTAGCTTCCGCAAGTTCTCCTTCGT CAAGTACCAAAACATCTGCGCTGTGCTGCCCAACTCGCGCCGCTTCGAGG ACGACGCGCGTGCCGCGGCGGCCGACAAGGCGGCCGCCGAGCGCGCTGCC GTGCTGTAAAAGTGAAACCGTGTATTTCTTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16299:743..1323+

>mRNA_P-wetherbeei_contig16299.1.1 ID=mRNA_P-wetherbeei_contig16299.1.1|Name=mRNA_P-wetherbeei_contig16299.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig16299:743..1323+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCTGCGGCAGCAGAGCTCCCCACGCAGGCCGCAAGGCAGCAGGCCCT
CTACGACCTCGTATACGTGGAGCGGATCCCGGAGGAGGCGAAGATGAGCA
GCGGCCTGCTGCTGCCGGGGAAGGAGAACCCGCGGATGCATGTCTGCAAG
GTGATCAGCATCGGCTCGGGCCGCGAGGGCGAGAGCGGCATCGTCGTGCC
CAACGCGGGCATCCAGCCGGGGGACCTCGTCTACGTCAAGGACCCGTGGG
GTATCGGCCCCCGGGACGACGAGTTTAGCTTCCGCAAGTTCTCCTTCGTC
AAGTACCAAAACATCTGCGCTGTGCTGCCCAACTCGCGCCGCTTCGAGGA
CGACGCGCGTGCCGCGGCGGCCGACAAGGCGGCCGCCGAGCGCGCTGCCG
TGCTGTAA
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