mRNA_P-wetherbeei_contig16226.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16226.1.1
Unique NamemRNA_P-wetherbeei_contig16226.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16226.1.1 vs. uniprot
Match: D7FSM0_ECTSI (Divalent cation transporter, carboxyterminus n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSM0_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 2.890e-54
Identity = 95/135 (70.37%), Postives = 110/135 (81.48%), Query Frame = 1
Query:    1 VYVTDEGQFAGVISMAALLTNSPDEAVRHVMRNSEEVLREGDSWEEAAHRLRAANVMAAPVVDEDGFLVAVLNPSDLLKEMEIEATDDVMRYSGSGGGESYFGTPLSRLVASRVGWLVSLLLLQSLSSVLLTYYQ 405
            +YVT+ G   G I+MA LLT+  +  V  ++R  EE+L EGDSWE+AAHRLR ANV+AAPVVD DG LVAVLNPSDLL+EMEIEATDD+MR SGSGGGESYFGTPL  LVASRVGWLVSLL LQS SS++L  +Q
Sbjct:  133 IYVTENGTLKGYITMAVLLTHQSETPVAELLRELEEMLHEGDSWEDAAHRLRQANVLAAPVVDSDGVLVAVLNPSDLLQEMEIEATDDIMRQSGSGGGESYFGTPLPSLVASRVGWLVSLLCLQSFSSLILQSFQ 267          
BLAST of mRNA_P-wetherbeei_contig16226.1.1 vs. uniprot
Match: A0A6H5JKL2_9PHAE (CBS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKL2_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 2.190e-53
Identity = 96/135 (71.11%), Postives = 109/135 (80.74%), Query Frame = 1
Query:    1 VYVTDEGQFAGVISMAALLTNSPDEAVRHVMRNSEEVLREGDSWEEAAHRLRAANVMAAPVVDEDGFLVAVLNPSDLLKEMEIEATDDVMRYSGSGGGESYFGTPLSRLVASRVGWLVSLLLLQSLSSVLLTYYQ 405
            +YVT+ G   G I+MA LLT+  D  V  ++R  EE+L EGDSWE+ AHRLR ANV+AAPVVD DG LVAVLNPSDLL+EMEIEATDD+MR SGSGGGESYFGTPL  LVASRVGWLVSLL LQS SSV+L  +Q
Sbjct:  266 IYVTENGTLKGYITMAVLLTHQSDTPVADLLRELEEMLHEGDSWEDTAHRLRQANVLAAPVVDSDGVLVAVLNPSDLLQEMEIEATDDIMRQSGSGGGESYFGTPLPSLVASRVGWLVSLLCLQSFSSVILQSFQ 400          
BLAST of mRNA_P-wetherbeei_contig16226.1.1 vs. uniprot
Match: A0A835YYN6_9STRA (CBS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYN6_9STRA)

HSP 1 Score: 175 bits (443), Expect = 2.730e-52
Identity = 88/121 (72.73%), Postives = 105/121 (86.78%), Query Frame = 1
Query:   43 MAALLTNSPDEAVRHVMRNSEEVLREGDSWEEAAHRLRAANVMAAPVVDEDGFLVAVLNPSDLLKEMEIEATDDVMRYSGSGGGESYFGTPLSRLVASRVGWLVSLLLLQSLSSVLLTYYQ 405
            MA+LLTN+PD  V  V+  SEEVL+EGD+WEEAA RLR A + +APVVDEDGFLVA+LNP+DLL EMEIEATDD+ R+SGSGGGE+YFGTPL +LV  R GWLVSLL+LQSLSSV+LT++Q
Sbjct:    1 MASLLTNTPDTLVADVVIKSEEVLKEGDAWEEAAQRLRKAGISSAPVVDEDGFLVAILNPTDLLMEMEIEATDDISRFSGSGGGETYFGTPLMKLVLRRCGWLVSLLMLQSLSSVILTHFQ 121          
BLAST of mRNA_P-wetherbeei_contig16226.1.1 vs. uniprot
Match: A0A4D9CYH9_9STRA (CBS domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CYH9_9STRA)

HSP 1 Score: 129 bits (323), Expect = 3.550e-32
Identity = 65/134 (48.51%), Postives = 95/134 (70.90%), Query Frame = 1
Query:    1 VYVTDEGQFAGVISMAALLTNSPDEAVRHVMRNSEEVLREGDSWEEAAHRLRAANVMAAPVVDEDGFLVAVLNPSDLLKEMEIEATDDVMRYSGSGGGESYFGTPLSRLVASRVGWLVSLLLLQSLSSVLLTYY 402
            ++VTD G+  G ++   LL       +  ++R+ E V+R+ D +++A   +RA  +  APVV ED  +V ++ PSD+LKEME+EATDDV RYSGSG  ES+FGTP+ +LV +R  WLVSLL+LQSLSS++LT++
Sbjct:  325 IFVTDCGRLVGYVTSMDLLVQDRVAPLLSIVRSCEVVVRDSDEYDDAIGAMRAKRLTYAPVVTEDEVVVGIITPSDMLKEMEMEATDDVSRYSGSGSTESFFGTPVLQLVTARASWLVSLLMLQSLSSIILTHF 458          
BLAST of mRNA_P-wetherbeei_contig16226.1.1 vs. uniprot
Match: A0A0G4EE00_VITBC (CBS domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EE00_VITBC)

HSP 1 Score: 116 bits (290), Expect = 4.770e-28
Identity = 66/142 (46.48%), Postives = 94/142 (66.20%), Query Frame = 1
Query:    1 VYVTDEGQFAGVISMAALLTNSPDEAVRHVMRNSEEVLREGDSWEEAAHRLRAANVMAAPVVDEDGFLVAVLNPSDLLKEMEIEATDDVMRYSG-------SGGGESYFGTPLSRLVASRVGWLVSLLLLQSLSSVLLTYYQ 405
            +YVT EG+  G ++M  LL  SP   ++ V++ +E V+R  ++ EEA+ RLR   V  AP+VDE G LV +L+P+DLL EME E T+D++R+ G          G+SYF TP+   + SR GW+VSLL LQSLSS++LT +Q
Sbjct:  158 IYVTQEGELRGYVTMGDLLMASPHTPLKTVLKPTE-VVRISENLEEASKRLRQRFVTMAPLVDEKGQLVGILSPNDLLNEMEAELTEDLLRFEGIFPSETMEKVGDSYFATPVIEHIKSRAGWVVSLLFLQSLSSIVLTKFQ 298          
BLAST of mRNA_P-wetherbeei_contig16226.1.1 vs. uniprot
Match: A0A6T6NC75_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A6T6NC75_9RHOD)

HSP 1 Score: 110 bits (274), Expect = 9.390e-26
Identity = 61/132 (46.21%), Postives = 84/132 (63.64%), Query Frame = 1
Query:   22 QFAGVISMAALLTNSPDEAVRHVMRNSEEVLREGDSWEEAAHRLRAANVMAAPVVDEDGFLVAVLNPSDLLKEMEIEATDDVMRYSGSGG----GESYFGTPLSRLVASRVGWLVSLLLLQSLSSVLLTYYQ 405
            +  G ++M  LL   PDE V +V + +E VL   D  +    +LR  NV+ APVVD +  LV VL  +D+++E+E EATDD++RY G GG     ESYFGT + +L   R+ WLV LL+LQSLSS++L  YQ
Sbjct:  178 KLVGYVTMLDLLLAKPDEVVENVSKTNELVLSIDDDLDNVLRKLRRDNVLIAPVVDVEEKLVGVLTATDMIRELEFEATDDLLRYGGVGGDEETAESYFGTSIRKLFFGRITWLVGLLMLQSLSSIVLGRYQ 309          
BLAST of mRNA_P-wetherbeei_contig16226.1.1 vs. uniprot
Match: A0A7J7ILB5_9RHOD (CBS domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7ILB5_9RHOD)

HSP 1 Score: 89.0 bits (219), Expect = 5.670e-18
Identity = 57/143 (39.86%), Postives = 82/143 (57.34%), Query Frame = 1
Query:    1 VYVTDE--GQFAGVISMAALLTNSPDEA-VRHVMRNSEEVLREGDSWEEAAHRLRAANVMAAPVVDEDGFLVAVLNPSDLLKEMEIEATDDVMRYSG------SGGGESYFGTPLSRLVASRVGWLVSLLLLQSLSSVLLTYY 402
            +YV D       G +S+  LL    DE  + H +R    VL   + +E A  RLR A  + APVVD +  LV ++  +D+++EME+EATDD++R+ G      +   ESYF T     V  R  WLV+LLLLQS+SS++L +Y
Sbjct:  327 LYVLDPCTSGLVGFLSLEDLLFAGDDEQKIDHFVRPCPTVLTVDEEFEAAVRRLRNAGALTAPVVDSELRLVGLITAADIIREMELEATDDILRFGGVESPLQTNDIESYFKTSTRSFVIGRSAWLVALLLLQSVSSIVLGHY 469          
BLAST of mRNA_P-wetherbeei_contig16226.1.1 vs. uniprot
Match: M2WSY5_GALSU (Magnesium transporter, MgtE family n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WSY5_GALSU)

HSP 1 Score: 86.7 bits (213), Expect = 1.220e-17
Identity = 50/134 (37.31%), Postives = 79/134 (58.96%), Query Frame = 1
Query:   13 DEGQFAGVISMAALLTNSPDEAVRHVMRNSEEVLREGDSWEEAAHRLRAANVMAAPVVDEDGFLVAVLNPSDLLKEMEIEATDDVMRYSGSGGGE---SYFGTPLSRLVASRVGWLVSLLLLQSLSSVLLTYYQ 405
            + G+  G I +  LL    ++ V   M+  + V R+  S E AA ++R+  V  APVVD +G  + ++N  D+++E+E EA +D MR SG    +   SYF T    L+  R+ WLV+LLL QS+SS++L ++Q
Sbjct:   42 ENGELRGYILIEELLFVELEQNVTVFMKKCDVVFRDDTSLEIAARKVRSFGVFCAPVVDSEGNFLGIVNALDIIREVEFEAAEDFMRVSGLNSVDVFQSYFETSSFSLIRERLSWLVALLLFQSISSIILGFFQ 175          
BLAST of mRNA_P-wetherbeei_contig16226.1.1 vs. uniprot
Match: A0A7C1KDM0_9CHLR (Magnesium transporter MgtE (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C1KDM0_9CHLR)

HSP 1 Score: 84.3 bits (207), Expect = 7.630e-17
Identity = 49/137 (35.77%), Postives = 76/137 (55.47%), Query Frame = 1
Query:    1 VYVTDEGQ-FAGVISMAALLTNSPDEAVRHVMRNSEEVLREGDSWEEAAHRLRAANVMAAPVVDEDGFLVAVLNPSDLLKEMEIEATDDVMRYSGSGGGES-YFGTPLSRLVASRVGWLVSLLLLQSLSSVLLTYYQ 405
            VYV D  Q   GV+S   L T  P+  VR +M      +RE    EE A      +++A PVVDEDG +  ++   D++  ++ EAT+D+ +  GS   ++ YF TPL R+V  R GWL +L + + L+S  + Y++
Sbjct:  147 VYVLDRQQHLLGVVSFRELFTAPPEALVRDIMHTDLVTVREDTDQEEVARLFAEHDLLAIPVVDEDGRMKGLVTVDDIVDVLQEEATEDIQKIGGSEALDAPYFDTPLPRMVRKRAGWLAALFVSEMLTSTAMGYFE 283          
BLAST of mRNA_P-wetherbeei_contig16226.1.1 vs. uniprot
Match: A0A7S3K4L6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K4L6_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.080e-16
Identity = 48/131 (36.64%), Postives = 75/131 (57.25%), Query Frame = 1
Query:   13 DEGQFAGVISMAALLTNSPDEAVRHVMRNSEEVLREGDSWEEAAHRLRAANVMAAPVVDEDGFLVAVLNPSDLLKEMEIEATDDVMRYSGSGG-GESYFGTPLSRLVASRVGWLVSLLLLQSLSSVLLTYY 402
            +EG+  G +    L+   P + +  +      V++  DS ++    LR  N+  APVVD +G LV  L P D++  +E EAT+DV R + SGG G +YF   +  ++ +R  WL+SLLLLQS+SS +L  +
Sbjct:  173 EEGKLDGYVRATELMLGEPYKKLGDIAIPLSVVVQSEDSIDDTVQLLRQENITIAPVVDSNGVLVTALAPLDVISALEAEATEDVARIALSGGIGSTYFNASIKAIILNRFSWLLSLLLLQSISSAVLASF 303          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16226.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSM0_ECTSI2.890e-5470.37Divalent cation transporter, carboxyterminus n=1 T... [more]
A0A6H5JKL2_9PHAE2.190e-5371.11CBS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YYN6_9STRA2.730e-5272.73CBS domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A4D9CYH9_9STRA3.550e-3248.51CBS domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A0G4EE00_VITBC4.770e-2846.48CBS domain-containing protein n=1 Tax=Vitrella bra... [more]
A0A6T6NC75_9RHOD9.390e-2646.21Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7J7ILB5_9RHOD5.670e-1839.86CBS domain-containing protein n=1 Tax=Cyanidiococc... [more]
M2WSY5_GALSU1.220e-1737.31Magnesium transporter, MgtE family n=1 Tax=Galdier... [more]
A0A7C1KDM0_9CHLR7.630e-1735.77Magnesium transporter MgtE (Fragment) n=1 Tax=Chlo... [more]
A0A7S3K4L6_9STRA1.080e-1636.64Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16226contigP-wetherbeei_contig16226:27..1175 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FSM0
PFAMsCBS,MgtE,MgtE_N
Model size405
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.74e-55
EggNOG OGsCOG2239@1|root,2S2TW@2759|Eukaryota
Ec32 ortholog descriptiondivalent cation transporter
Ec32 orthologEc-04_000520.1
DescriptionDivalent cation transporter
Cds size405
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186080.6990826-CDS-P-wetherbeei_contig16226:26..1791683186080.6990826-CDS-P-wetherbeei_contig16226:26..179Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16226 27..179 -
1683186080.7108462-CDS-P-wetherbeei_contig16226:438..5351683186080.7108462-CDS-P-wetherbeei_contig16226:438..535Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16226 439..535 -
1683186080.7186067-CDS-P-wetherbeei_contig16226:1020..11751683186080.7186067-CDS-P-wetherbeei_contig16226:1020..1175Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16226 1021..1175 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16226.1.1prot_P-wetherbeei_contig16226.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16226 27..1175 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16226.1.1

>prot_P-wetherbeei_contig16226.1.1 ID=prot_P-wetherbeei_contig16226.1.1|Name=mRNA_P-wetherbeei_contig16226.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=135bp
VYVTDEGQFAGVISMAALLTNSPDEAVRHVMRNSEEVLREGDSWEEAAHR
LRAANVMAAPVVDEDGFLVAVLNPSDLLKEMEIEATDDVMRYSGSGGGES
YFGTPLSRLVASRVGWLVSLLLLQSLSSVLLTYYQ
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mRNA from alignment at P-wetherbeei_contig16226:27..1175-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16226.1.1 ID=mRNA_P-wetherbeei_contig16226.1.1|Name=mRNA_P-wetherbeei_contig16226.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1149bp|location=Sequence derived from alignment at P-wetherbeei_contig16226:27..1175- (Phaeothamnion wetherbeei SAG_119_79)
GTGTACGTGACCGATGAGGGTCAGTTTGCGGGGGTGATCTCGATGGCGGC ACTGCTGACCAACAGCCCCGACGAGGCGGTGCGGCACGTGATGCGTAACT CGGAGGAGGTGCTGCGGGAGGGCGACAGCTGGGAGGAGGCTGCCCACCGC CTAAGGTAACCCGCTGTGAGAATGAAGAGCATTATCGCTCGGCCATCTTT CTGTCTGGCGATGCGACACTGTGATAATAGGAAAGCTGCCTGTTCGGCTG GTGCTTGTTTTTTGGGGGAAGGTTGGATATGACTGGGACGAAAACAGCCG CTGCAGAGCGGCAGCAGCGGTGGCTGCGGCAAAAGAGACTTCCATTCTGG ACGCAGTTTAGGGCAGGGATGCGAAACAGCCTGTTGCACACAGGCGGTTT GTGTGCGGATGTGTTGCGGGGTTGAACGGAGAGCTCACTTCGATGTCGCC TTGTTCTCCTCTGCCTTCATACGGTGCTGAAATCCAGCGTTTCGTCTTCC TTTTCTTCCCCCCTCTCGCTTTTTCCTTTTCCCCTCTTCCTTGTTCGTCT TCGCGTTTCTGCTGTACGTCTACTTCCTCTGTTGCGTCTTCTCGATTGCC GTTTCTCTTTTGCCGCTTTCACATCTTGCTGCAATGTCAGGGCGGCCAAC GTGATGGCGGCGCCGGTGGTGGACGAGGACGGGTTCCTCGTGGCCGTTCT CAACCCGTCCGACCTCCTCAAAGAGATGGAGATCGAGGTAAATTCCTCGT AAGAACCGAAGGGGAGAGTCCGATTTTCTGTAACTGAATTCCTGCAACAC ATTTTCTCTGATAAGGCTTTCAGCAAGTCGGCCCACGCTTGTATCTATCC CCGCATTTCCAGATATCCAGATGTGATGCTTATTAAAAGAAGGTTAAGCA CTGTCCCTGCGAAATTGCAATGCAACTTCAATCTAAACGCCCAATTATCT GACTCTGCGGAACCACCATCCCATCCATCCGTGCGTCTTCTGCTAGGCAA CGGACGACGTGATGCGGTACTCGGGGTCGGGCGGCGGCGAATCGTACTTC GGGACGCCGCTGTCGCGCCTCGTCGCCTCGCGGGTGGGGTGGCTCGTCAG CCTCCTGCTGCTGCAGTCCCTCTCCTCCGTACTCCTCACGTACTACCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16226:27..1175-

>mRNA_P-wetherbeei_contig16226.1.1 ID=mRNA_P-wetherbeei_contig16226.1.1|Name=mRNA_P-wetherbeei_contig16226.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig16226:27..1175- (Phaeothamnion wetherbeei SAG_119_79)
GTGTACGTGACCGATGAGGGTCAGTTTGCGGGGGTGATCTCGATGGCGGC
ACTGCTGACCAACAGCCCCGACGAGGCGGTGCGGCACGTGATGCGTAACT
CGGAGGAGGTGCTGCGGGAGGGCGACAGCTGGGAGGAGGCTGCCCACCGC
CTAAGGGCGGCCAACGTGATGGCGGCGCCGGTGGTGGACGAGGACGGGTT
CCTCGTGGCCGTTCTCAACCCGTCCGACCTCCTCAAAGAGATGGAGATCG
AGGCAACGGACGACGTGATGCGGTACTCGGGGTCGGGCGGCGGCGAATCG
TACTTCGGGACGCCGCTGTCGCGCCTCGTCGCCTCGCGGGTGGGGTGGCT
CGTCAGCCTCCTGCTGCTGCAGTCCCTCTCCTCCGTACTCCTCACGTACT
ACCAG
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