mRNA_P-wetherbeei_contig16000.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16000.1.1
Unique NamemRNA_P-wetherbeei_contig16000.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16000.1.1 vs. uniprot
Match: D7G6W9_ECTSI (60S ribosomal protein L13a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6W9_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 1.210e-27
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:    1 GNKVVVVRCEEITISGSLVRNKVKYMQFLKKRHNTNPARGPYHFRSPARIFWRSV 165
            G KVVVVRCE+ITISGSLVRNKVKYMQ+ KKRHNTNP RGPYHFRSPARIFWR+V
Sbjct:   29 GQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTV 83
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BLAST of mRNA_P-wetherbeei_contig16000.1.1 vs. uniprot
Match: A0A812Z453_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Z453_SYMMI)

HSP 1 Score: 95.9 bits (237), Expect = 1.120e-23
Identity = 40/55 (72.73%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    1 GNKVVVVRCEEITISGSLVRNKVKYMQFLKKRHNTNPARGPYHFRSPARIFWRSV 165
            G ++V+VRCE++ ISGSL RNKVKY QFL KRHNTNP RGP+HF+SPARI WRS+
Sbjct:   29 GKRIVIVRCEDVMISGSLTRNKVKYAQFLNKRHNTNPVRGPFHFKSPARILWRSI 83
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BLAST of mRNA_P-wetherbeei_contig16000.1.1 vs. uniprot
Match: A0A835Z9N1_9STRA (60S ribosomal protein L13a n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9N1_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 2.030e-23
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    1 GNKVVVVRCEEITISGSLVRNKVKYMQFLKKRHNTNPARGPYHFRSPARIFWRSV 165
            G KV+VVR E+I ISGSLVRNKVKY QF KKR NTNPARGP+HFRSPARIFWR++
Sbjct:   30 GQKVIVVRAEQIVISGSLVRNKVKYAQFRKKRMNTNPARGPFHFRSPARIFWRTI 84
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BLAST of mRNA_P-wetherbeei_contig16000.1.1 vs. uniprot
Match: A0A7S0LS12_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LS12_9EUKA)

HSP 1 Score: 94.4 bits (233), Expect = 7.220e-23
Identity = 43/55 (78.18%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    1 GNKVVVVRCEEITISGSLVRNKVKYMQFLKKRHNTNPARGPYHFRSPARIFWRSV 165
            G KVVVVRCE + ISGSL RNKVKY QF+KKR NTNP RGP+HFRSPARIFWR++
Sbjct:   35 GKKVVVVRCEALIISGSLTRNKVKYAQFMKKRMNTNPNRGPFHFRSPARIFWRTL 89
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BLAST of mRNA_P-wetherbeei_contig16000.1.1 vs. uniprot
Match: A0A8C1FFB1_CYPCA (Ribosomal protein L13a n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1FFB1_CYPCA)

HSP 1 Score: 90.9 bits (224), Expect = 8.900e-23
Identity = 39/55 (70.91%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    1 GNKVVVVRCEEITISGSLVRNKVKYMQFLKKRHNTNPARGPYHFRSPARIFWRSV 165
            G+K+VVVRCE I ISG+  RNK+KY+ FL+KR NTNP+RGPYHFR+P+RIFWR+V
Sbjct:    9 GHKIVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTV 63
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BLAST of mRNA_P-wetherbeei_contig16000.1.1 vs. uniprot
Match: A0A317BNQ6_STEMA (50S ribosomal protein L13 (Fragment) n=2 Tax=Stenotrophomonas maltophilia TaxID=40324 RepID=A0A317BNQ6_STEMA)

HSP 1 Score: 90.9 bits (224), Expect = 1.020e-22
Identity = 39/55 (70.91%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    1 GNKVVVVRCEEITISGSLVRNKVKYMQFLKKRHNTNPARGPYHFRSPARIFWRSV 165
            G+KVV+VRCE I ISG+  RNK+KY+ FL+KR NTNP+RGPYHFR+P+RIFWR+V
Sbjct:   24 GHKVVIVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTV 78
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BLAST of mRNA_P-wetherbeei_contig16000.1.1 vs. uniprot
Match: A0A1B1R0Z8_PUNSO (60S ribosomal protein L13a (Fragment) n=1 Tax=Puntius sophore TaxID=205134 RepID=A0A1B1R0Z8_PUNSO)

HSP 1 Score: 91.3 bits (225), Expect = 1.150e-22
Identity = 40/55 (72.73%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    1 GNKVVVVRCEEITISGSLVRNKVKYMQFLKKRHNTNPARGPYHFRSPARIFWRSV 165
            G+KVVVVRCE I ISG+  RNK+KY+ FL+KR NTNP+RGPYHFR+P+RIFWR+V
Sbjct:   28 GHKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTV 82
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BLAST of mRNA_P-wetherbeei_contig16000.1.1 vs. uniprot
Match: UPI0011C4DF15 (50S ribosomal protein L13 n=1 Tax=Acinetobacter baumannii TaxID=470 RepID=UPI0011C4DF15)

HSP 1 Score: 91.3 bits (225), Expect = 1.180e-22
Identity = 40/55 (72.73%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    1 GNKVVVVRCEEITISGSLVRNKVKYMQFLKKRHNTNPARGPYHFRSPARIFWRSV 165
            G+KVVVVRCE I ISG+  RNK+KY+ FL+KR NTNP+RGPYHFR+P+RIFWR+V
Sbjct:   26 GHKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTV 80
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BLAST of mRNA_P-wetherbeei_contig16000.1.1 vs. uniprot
Match: UPI00132FC109 (50S ribosomal protein L13 n=1 Tax=Klebsiella pneumoniae TaxID=573 RepID=UPI00132FC109)

HSP 1 Score: 90.9 bits (224), Expect = 1.310e-22
Identity = 40/55 (72.73%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    1 GNKVVVVRCEEITISGSLVRNKVKYMQFLKKRHNTNPARGPYHFRSPARIFWRSV 165
            G KVVVVRCE I ISG+  RNK+KY+ FL+KR NTNP+RGPYHFR+P+RIFWR+V
Sbjct:   23 GRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTV 77
[Close]
BLAST of mRNA_P-wetherbeei_contig16000.1.1 vs. uniprot
Match: A0A286XB71_CAVPO (60S ribosomal protein L13a n=4 Tax=Rodentia TaxID=9989 RepID=A0A286XB71_CAVPO)

HSP 1 Score: 91.3 bits (225), Expect = 1.880e-22
Identity = 40/55 (72.73%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    1 GNKVVVVRCEEITISGSLVRNKVKYMQFLKKRHNTNPARGPYHFRSPARIFWRSV 165
            G+KVVVVRCE I ISG+  RNK+KY+ FL+KR NTNP+RGPYHFR+P+RIFWR+V
Sbjct:   30 GHKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTV 84
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16000.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6W9_ECTSI1.210e-2789.0960S ribosomal protein L13a n=2 Tax=Ectocarpus TaxI... [more]
A0A812Z453_SYMMI1.120e-2372.73Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
A0A835Z9N1_9STRA2.030e-2380.0060S ribosomal protein L13a n=1 Tax=Tribonema minus... [more]
A0A7S0LS12_9EUKA7.220e-2378.18Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A8C1FFB1_CYPCA8.900e-2370.91Ribosomal protein L13a n=1 Tax=Cyprinus carpio Tax... [more]
A0A317BNQ6_STEMA1.020e-2270.9150S ribosomal protein L13 (Fragment) n=2 Tax=Steno... [more]
A0A1B1R0Z8_PUNSO1.150e-2272.7360S ribosomal protein L13a (Fragment) n=1 Tax=Punt... [more]
UPI0011C4DF151.180e-2272.7350S ribosomal protein L13 n=1 Tax=Acinetobacter ba... [more]
UPI00132FC1091.310e-2272.7350S ribosomal protein L13 n=1 Tax=Klebsiella pneum... [more]
A0A286XB71_CAVPO1.880e-2272.7360S ribosomal protein L13a n=4 Tax=Rodentia TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16000contigP-wetherbeei_contig16000:14..519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G6W9
Preferred nameRPL13A
PFAMsRibosomal_L13
Model size165
Max annot lvl2759|Eukaryota
KEGG rclassRC01978
KEGG koko:K02872,ko:K03644
KEGG ReactionR07767,R07768
KEGG Pathwayko00785,ko01100,ko03010,map00785,map01100,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000184,GO:0000956,GO:0002181,GO:0002237,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006928,GO:0006935,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007275,GO:0007423,GO:0008104,GO:0008150,GO:0008152,GO:0008407,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009653,GO:0009719,GO:0009887,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010212,GO:0010224,GO:0010243,GO:0010332,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0014070,GO:0014074,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0016477,GO:0017148,GO:0019222,GO:0019439,GO:0019538,GO:0022416,GO:0022625,GO:0022626,GO:0023052,GO:0030323,GO:0030324,GO:0030595,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031333,GO:0032268,GO:0032269,GO:0032496,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0033993,GO:0034097,GO:0034248,GO:0034249,GO:0034341,GO:0034613,GO:0034641,GO:0034644,GO:0034645,GO:0034655,GO:0035295,GO:0040011,GO:0042221,GO:0042330,GO:0042592,GO:0042886,GO:0043043,GO:0043170,GO:0043207,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043603,GO:0043604,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045087,GO:0045184,GO:0045947,GO:0046483,GO:0046683,GO:0046700,GO:0046907,GO:0048246,GO:0048513,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0048870,GO:0050789,GO:0050794,GO:0050896,GO:0050900,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051591,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0060326,GO:0060425,GO:0060541,GO:0065007,GO:0065008,GO:0070727,GO:0070887,GO:0070972,GO:0071214,GO:0071310,GO:0071320,GO:0071345,GO:0071346,GO:0071407,GO:0071417,GO:0071478,GO:0071479,GO:0071480,GO:0071482,GO:0071493,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0097452,GO:0097529,GO:0104004,GO:1901193,GO:1901194,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1904688,GO:1904689,GO:1905517,GO:1990904,GO:2000112,GO:2000113,GO:2000765,GO:2000766
Exons2
Evalue1.99e-28
EggNOG OGsCOG0102@1|root,KOG3204@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein L13, eukaryotic/archaeal
Ec32 orthologEc-01_011950.1
EC2.8.1.8
DescriptionBelongs to the universal ribosomal protein uL13 family
Cds size165
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186074.4285195-CDS-P-wetherbeei_contig16000:13..1261683186074.4285195-CDS-P-wetherbeei_contig16000:13..126Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16000 14..126 -
1683186074.4413574-CDS-P-wetherbeei_contig16000:467..5191683186074.4413574-CDS-P-wetherbeei_contig16000:467..519Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16000 468..519 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16000.1.1prot_P-wetherbeei_contig16000.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16000 14..519 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16000.1.1

>prot_P-wetherbeei_contig16000.1.1 ID=prot_P-wetherbeei_contig16000.1.1|Name=mRNA_P-wetherbeei_contig16000.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=55bp
GNKVVVVRCEEITISGSLVRNKVKYMQFLKKRHNTNPARGPYHFRSPARI
FWRSV
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mRNA from alignment at P-wetherbeei_contig16000:14..519-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16000.1.1 ID=mRNA_P-wetherbeei_contig16000.1.1|Name=mRNA_P-wetherbeei_contig16000.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=506bp|location=Sequence derived from alignment at P-wetherbeei_contig16000:14..519- (Phaeothamnion wetherbeei SAG_119_79)
GGCAACAAGGTCGTCGTGGTGCGCTGCGAGGAGATCACCATATCGGGCTC
GCGTAAGTCTATGCTGCGTGCTGCCGGTTCGGTCGGTCCTCAGCATGCTT
CTTTTCCATGGCCACGGAAGGCCTAAAGCCAGGCCAAAAAATGGAAAAAG
AGCTTGGCGGGTGGGCTAAGTTACACGGTCATAAGTGGCTTGGTTTTGTG
CTAGTAACGTGCTAGTAGAACGAGGTTGGCGATCAACGACTTTGTCTTTG
CCTTATGTTTCTTGTTGGGACATGCCTTTTCCAGACCTAAGGATATTTCC
AACATCGCGGCCCTAGAGCGACGAAACACTTTCCTGCACTTGCGCCTTGA
GTGATACGTCTTCGTCAACACTGTCTTTGTATTTTGCGCGCAGTCGTCCG
GAACAAGGTGAAATACATGCAGTTCCTGAAGAAGCGCCACAACACCAACC
CGGCCCGCGGACCGTATCACTTCCGATCGCCAGCGCGGATCTTCTGGCGC
TCGGTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16000:14..519-

>mRNA_P-wetherbeei_contig16000.1.1 ID=mRNA_P-wetherbeei_contig16000.1.1|Name=mRNA_P-wetherbeei_contig16000.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=165bp|location=Sequence derived from alignment at P-wetherbeei_contig16000:14..519- (Phaeothamnion wetherbeei SAG_119_79)
GGCAACAAGGTCGTCGTGGTGCGCTGCGAGGAGATCACCATATCGGGCTC
GCTCGTCCGGAACAAGGTGAAATACATGCAGTTCCTGAAGAAGCGCCACA
ACACCAACCCGGCCCGCGGACCGTATCACTTCCGATCGCCAGCGCGGATC
TTCTGGCGCTCGGTA
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