prot_P-wetherbeei_contig16000.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig16000.1.1
Unique Nameprot_P-wetherbeei_contig16000.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length55
Homology
BLAST of mRNA_P-wetherbeei_contig16000.1.1 vs. uniprot
Match: D7G6W9_ECTSI (60S ribosomal protein L13a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6W9_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 1.210e-27
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0
Query:    1 GNKVVVVRCEEITISGSLVRNKVKYMQFLKKRHNTNPARGPYHFRSPARIFWRSV 55
            G KVVVVRCE+ITISGSLVRNKVKYMQ+ KKRHNTNP RGPYHFRSPARIFWR+V
Sbjct:   29 GQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTV 83          
BLAST of mRNA_P-wetherbeei_contig16000.1.1 vs. uniprot
Match: A0A812Z453_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Z453_SYMMI)

HSP 1 Score: 95.9 bits (237), Expect = 1.120e-23
Identity = 40/55 (72.73%), Postives = 48/55 (87.27%), Query Frame = 0
Query:    1 GNKVVVVRCEEITISGSLVRNKVKYMQFLKKRHNTNPARGPYHFRSPARIFWRSV 55
            G ++V+VRCE++ ISGSL RNKVKY QFL KRHNTNP RGP+HF+SPARI WRS+
Sbjct:   29 GKRIVIVRCEDVMISGSLTRNKVKYAQFLNKRHNTNPVRGPFHFKSPARILWRSI 83          
BLAST of mRNA_P-wetherbeei_contig16000.1.1 vs. uniprot
Match: A0A835Z9N1_9STRA (60S ribosomal protein L13a n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9N1_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 2.030e-23
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = 0
Query:    1 GNKVVVVRCEEITISGSLVRNKVKYMQFLKKRHNTNPARGPYHFRSPARIFWRSV 55
            G KV+VVR E+I ISGSLVRNKVKY QF KKR NTNPARGP+HFRSPARIFWR++
Sbjct:   30 GQKVIVVRAEQIVISGSLVRNKVKYAQFRKKRMNTNPARGPFHFRSPARIFWRTI 84          
BLAST of mRNA_P-wetherbeei_contig16000.1.1 vs. uniprot
Match: A0A7S0LS12_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LS12_9EUKA)

HSP 1 Score: 94.4 bits (233), Expect = 7.220e-23
Identity = 43/55 (78.18%), Postives = 48/55 (87.27%), Query Frame = 0
Query:    1 GNKVVVVRCEEITISGSLVRNKVKYMQFLKKRHNTNPARGPYHFRSPARIFWRSV 55
            G KVVVVRCE + ISGSL RNKVKY QF+KKR NTNP RGP+HFRSPARIFWR++
Sbjct:   35 GKKVVVVRCEALIISGSLTRNKVKYAQFMKKRMNTNPNRGPFHFRSPARIFWRTL 89          
BLAST of mRNA_P-wetherbeei_contig16000.1.1 vs. uniprot
Match: A0A8C1FFB1_CYPCA (Ribosomal protein L13a n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1FFB1_CYPCA)

HSP 1 Score: 90.9 bits (224), Expect = 8.900e-23
Identity = 39/55 (70.91%), Postives = 49/55 (89.09%), Query Frame = 0
Query:    1 GNKVVVVRCEEITISGSLVRNKVKYMQFLKKRHNTNPARGPYHFRSPARIFWRSV 55
            G+K+VVVRCE I ISG+  RNK+KY+ FL+KR NTNP+RGPYHFR+P+RIFWR+V
Sbjct:    9 GHKIVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTV 63          
BLAST of mRNA_P-wetherbeei_contig16000.1.1 vs. uniprot
Match: A0A317BNQ6_STEMA (50S ribosomal protein L13 (Fragment) n=2 Tax=Stenotrophomonas maltophilia TaxID=40324 RepID=A0A317BNQ6_STEMA)

HSP 1 Score: 90.9 bits (224), Expect = 1.020e-22
Identity = 39/55 (70.91%), Postives = 49/55 (89.09%), Query Frame = 0
Query:    1 GNKVVVVRCEEITISGSLVRNKVKYMQFLKKRHNTNPARGPYHFRSPARIFWRSV 55
            G+KVV+VRCE I ISG+  RNK+KY+ FL+KR NTNP+RGPYHFR+P+RIFWR+V
Sbjct:   24 GHKVVIVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTV 78          
BLAST of mRNA_P-wetherbeei_contig16000.1.1 vs. uniprot
Match: A0A1B1R0Z8_PUNSO (60S ribosomal protein L13a (Fragment) n=1 Tax=Puntius sophore TaxID=205134 RepID=A0A1B1R0Z8_PUNSO)

HSP 1 Score: 91.3 bits (225), Expect = 1.150e-22
Identity = 40/55 (72.73%), Postives = 49/55 (89.09%), Query Frame = 0
Query:    1 GNKVVVVRCEEITISGSLVRNKVKYMQFLKKRHNTNPARGPYHFRSPARIFWRSV 55
            G+KVVVVRCE I ISG+  RNK+KY+ FL+KR NTNP+RGPYHFR+P+RIFWR+V
Sbjct:   28 GHKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTV 82          
BLAST of mRNA_P-wetherbeei_contig16000.1.1 vs. uniprot
Match: UPI0011C4DF15 (50S ribosomal protein L13 n=1 Tax=Acinetobacter baumannii TaxID=470 RepID=UPI0011C4DF15)

HSP 1 Score: 91.3 bits (225), Expect = 1.180e-22
Identity = 40/55 (72.73%), Postives = 49/55 (89.09%), Query Frame = 0
Query:    1 GNKVVVVRCEEITISGSLVRNKVKYMQFLKKRHNTNPARGPYHFRSPARIFWRSV 55
            G+KVVVVRCE I ISG+  RNK+KY+ FL+KR NTNP+RGPYHFR+P+RIFWR+V
Sbjct:   26 GHKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTV 80          
BLAST of mRNA_P-wetherbeei_contig16000.1.1 vs. uniprot
Match: UPI00132FC109 (50S ribosomal protein L13 n=1 Tax=Klebsiella pneumoniae TaxID=573 RepID=UPI00132FC109)

HSP 1 Score: 90.9 bits (224), Expect = 1.310e-22
Identity = 40/55 (72.73%), Postives = 48/55 (87.27%), Query Frame = 0
Query:    1 GNKVVVVRCEEITISGSLVRNKVKYMQFLKKRHNTNPARGPYHFRSPARIFWRSV 55
            G KVVVVRCE I ISG+  RNK+KY+ FL+KR NTNP+RGPYHFR+P+RIFWR+V
Sbjct:   23 GRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTV 77          
BLAST of mRNA_P-wetherbeei_contig16000.1.1 vs. uniprot
Match: A0A286XB71_CAVPO (60S ribosomal protein L13a n=4 Tax=Rodentia TaxID=9989 RepID=A0A286XB71_CAVPO)

HSP 1 Score: 91.3 bits (225), Expect = 1.880e-22
Identity = 40/55 (72.73%), Postives = 49/55 (89.09%), Query Frame = 0
Query:    1 GNKVVVVRCEEITISGSLVRNKVKYMQFLKKRHNTNPARGPYHFRSPARIFWRSV 55
            G+KVVVVRCE I ISG+  RNK+KY+ FL+KR NTNP+RGPYHFR+P+RIFWR+V
Sbjct:   30 GHKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTV 84          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16000.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6W9_ECTSI1.210e-2789.0960S ribosomal protein L13a n=2 Tax=Ectocarpus TaxI... [more]
A0A812Z453_SYMMI1.120e-2372.73Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
A0A835Z9N1_9STRA2.030e-2380.0060S ribosomal protein L13a n=1 Tax=Tribonema minus... [more]
A0A7S0LS12_9EUKA7.220e-2378.18Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A8C1FFB1_CYPCA8.900e-2370.91Ribosomal protein L13a n=1 Tax=Cyprinus carpio Tax... [more]
A0A317BNQ6_STEMA1.020e-2270.9150S ribosomal protein L13 (Fragment) n=2 Tax=Steno... [more]
A0A1B1R0Z8_PUNSO1.150e-2272.7360S ribosomal protein L13a (Fragment) n=1 Tax=Punt... [more]
UPI0011C4DF151.180e-2272.7350S ribosomal protein L13 n=1 Tax=Acinetobacter ba... [more]
UPI00132FC1091.310e-2272.7350S ribosomal protein L13 n=1 Tax=Klebsiella pneum... [more]
A0A286XB71_CAVPO1.880e-2272.7360S ribosomal protein L13a n=4 Tax=Rodentia TaxID=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005822Ribosomal protein L13PFAMPF00572Ribosomal_L13coord: 1..55
e-value: 8.0E-9
score: 35.6
IPR005822Ribosomal protein L13PANTHERPTHR11545RIBOSOMAL PROTEIN L13coord: 1..55
IPR036899Ribosomal protein L13 superfamilyGENE3D3.90.1180.10Ribosomal protein L13coord: 1..55
e-value: 2.2E-16
score: 62.0
IPR036899Ribosomal protein L13 superfamilySUPERFAMILY52161Ribosomal protein L13coord: 1..55
IPR005755Ribosomal protein L13, eukaryotic/archaealPANTHERPTHR11545:SF360S RIBOSOMAL PROTEIN L13A-RELATEDcoord: 1..55

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16000contigP-wetherbeei_contig16000:14..519 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16000.1.1mRNA_P-wetherbeei_contig16000.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig16000 14..519 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig16000.1.1 ID=prot_P-wetherbeei_contig16000.1.1|Name=mRNA_P-wetherbeei_contig16000.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=55bp
GNKVVVVRCEEITISGSLVRNKVKYMQFLKKRHNTNPARGPYHFRSPARI
FWRSV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005822Ribosomal_L13
IPR036899Ribosomal_L13_sf
IPR005755Ribosomal_L13_euk/arc