mRNA_P-wetherbeei_contig15956.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig15956.1.1 vs. uniprot
Match: A0A537NBS8_9PROT (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537NBS8_9PROT) HSP 1 Score: 309 bits (792), Expect = 1.180e-101 Identity = 174/241 (72.20%), Postives = 192/241 (79.67%), Query Frame = 1
Query: 1 PPWHGPQ-ERGDEPAGRARRFGGDRTNILIREMWRICQCGTLAWSTREAMLRETMIRRLSRRATLGAAAVLPAA-LLPWGLGAQSP---WKPSQAVKIVVPAAPGGTTDIVARLLAAHLQQAWGQSCVVDNKSGAGGVIGSAEVVKSAPDGSTILMGNIGPQSIAYSLYRNMPYTQASLIPVSCVLTAPNVLVLHPSVPAKTVPEFVAWLKAQNGKASYASSGTGQSPHLSAAWFLQLTGT 708
PPWHG + +G AGRA LIR++W+ICQCGT A +R ++ ET+ RRL+RRA+L AAVLP+ LL GL AQS WKPSQ V+IVVPAAPGGTTDIVARLLAAHLQ AWGQSCVVDNKSGAGGVIGS EV K+ DG T LMGNIGPQSIAYSLYRNMPY SLI VS V+TAPNVL++HPSVPAKTVPEFVAWL+AQNG ASYASSGTGQSPHLS AWFLQLTGT
Sbjct: 17 PPWHGARCGKGKSGAGRAAN--------LIRQLWQICQCGTGAARSRRSV-EETVTRRLTRRASLAGAAVLPSVVLLSRGLRAQSGSSGWKPSQGVRIVVPAAPGGTTDIVARLLAAHLQAAWGQSCVVDNKSGAGGVIGSTEVAKATADGHTALMGNIGPQSIAYSLYRNMPYRPDSLIGVSKVITAPNVLLVHPSVPAKTVPEFVAWLRAQNGTASYASSGTGQSPHLSGAWFLQLTGT 248
BLAST of mRNA_P-wetherbeei_contig15956.1.1 vs. uniprot
Match: A0A521MEZ7_9HYPH (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521MEZ7_9HYPH) HSP 1 Score: 304 bits (779), Expect = 1.850e-100 Identity = 166/192 (86.46%), Postives = 171/192 (89.06%), Query Frame = 1
Query: 160 MIRRLSRRATL----GAAAVLPAA-LLPWGLGAQS----PWKPSQAVKIVVPAAPGGTTDIVARLLAAHLQQAWGQSCVVDNKSGAGGVIGSAEVVKSAPDGSTILMGNIGPQSIAYSLYRNMPYTQASLIPVSCVLTAPNVLVLHPSVPAKTVPEFVAWLKAQNGKASYASSGTGQSPHLSAAWFLQLTGT 708
MIRRLSRR + GAAA LPAA LLP LGAQS PWKP+Q VKIVVPAAPGGTTDIVARLLAAHLQQAWGQ+CVV+NKSGAGGVIGS EVVKSAPDG TILMGNIGPQSI YSLYRNMPYT ASLIPVSCVLTAPNVLV+HPSVPAKTVPEFVAWLKAQNGK SYASSGTGQSPHLS AWFLQLTGT
Sbjct: 1 MIRRLSRRTAVRLATGAAAALPAAALLPRTLGAQSSGSSPWKPTQGVKIVVPAAPGGTTDIVARLLAAHLQQAWGQTCVVENKSGAGGVIGSNEVVKSAPDGHTILMGNIGPQSIGYSLYRNMPYTPASLIPVSCVLTAPNVLVVHPSVPAKTVPEFVAWLKAQNGKVSYASSGTGQSPHLSGAWFLQLTGT 192
BLAST of mRNA_P-wetherbeei_contig15956.1.1 vs. uniprot
Match: A0A1E4HTN7_9PROT (C4-dicarboxylate ABC transporter n=4 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1E4HTN7_9PROT) HSP 1 Score: 291 bits (744), Expect = 2.890e-95 Identity = 152/184 (82.61%), Postives = 166/184 (90.22%), Query Frame = 1
Query: 160 MIRRLSRRATLGAAAVLPAA-LLPWGLGAQSPWKPSQAVKIVVPAAPGGTTDIVARLLAAHLQQAWGQSCVVDNKSGAGGVIGSAEVVKSAPDGSTILMGNIGPQSIAYSLYRNMPYTQASLIPVSCVLTAPNVLVLHPSVPAKTVPEFVAWLKAQNGKASYASSGTGQSPHLSAAWFLQLTGT 708
M RRL+RRA L AA+ LPAA LLP AQ+ W P+Q+V++VVPAAPGG TDI+ RLLA+HLQ+AWGQSCVVDNKSGAGGVIGS EVVKS PDG+TILMGNIGPQ+IAYSLYRNMPYT ASLIPVS +TAPNVLVLHPSVPAKT+PEFVAWLKAQNGKASYASSGTGQSPHLSAAWFLQLTGT
Sbjct: 1 MTRRLTRRAALVAASALPAAALLPTSSRAQAAWTPTQSVRVVVPAAPGGGTDIMGRLLASHLQEAWGQSCVVDNKSGAGGVIGSTEVVKSKPDGTTILMGNIGPQAIAYSLYRNMPYTPASLIPVSNAITAPNVLVLHPSVPAKTIPEFVAWLKAQNGKASYASSGTGQSPHLSAAWFLQLTGT 184
BLAST of mRNA_P-wetherbeei_contig15956.1.1 vs. uniprot
Match: A0A259MMB8_9PROT (C4-dicarboxylate ABC transporter n=5 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A259MMB8_9PROT) HSP 1 Score: 287 bits (735), Expect = 6.680e-94 Identity = 152/184 (82.61%), Postives = 162/184 (88.04%), Query Frame = 1
Query: 160 MIRRLSRRATLGAAAVLPAA-LLPWGLGAQSPWKPSQAVKIVVPAAPGGTTDIVARLLAAHLQQAWGQSCVVDNKSGAGGVIGSAEVVKSAPDGSTILMGNIGPQSIAYSLYRNMPYTQASLIPVSCVLTAPNVLVLHPSVPAKTVPEFVAWLKAQNGKASYASSGTGQSPHLSAAWFLQLTGT 708
M R LSRRA LGAAA LLP GL AQ+ WKP+Q V++VVPAAPGGTTDI ARLLA+HL +AWGQSCVVDNKSGAGGVIGS EV K+APDG+TILMGNIGPQSIAYSLYRNMPYT ASLIPVS +TAPNVLV+HPSVPAKTVPEFVAWLKAQNGKASYASSGTGQSPHL AWFLQLTGT
Sbjct: 1 MTRSLSRRAALGAAAXXXXXXLLPRGLQAQAAWKPTQNVRMVVPAAPGGTTDIAARLLASHLTEAWGQSCVVDNKSGAGGVIGSTEVAKAAPDGNTILMGNIGPQSIAYSLYRNMPYTPASLIPVSNAITAPNVLVVHPSVPAKTVPEFVAWLKAQNGKASYASSGTGQSPHLCGAWFLQLTGT 184
BLAST of mRNA_P-wetherbeei_contig15956.1.1 vs. uniprot
Match: A0A1H8UEQ4_9PROT (Tripartite-type tricarboxylate transporter, receptor component TctC n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1H8UEQ4_9PROT) HSP 1 Score: 284 bits (727), Expect = 1.090e-92 Identity = 149/180 (82.78%), Postives = 157/180 (87.22%), Query Frame = 1
Query: 172 LSRRATLGAAAVLPAA-LLPWGLGAQSPWKPSQAVKIVVPAAPGGTTDIVARLLAAHLQQAWGQSCVVDNKSGAGGVIGSAEVVKSAPDGSTILMGNIGPQSIAYSLYRNMPYTQASLIPVSCVLTAPNVLVLHPSVPAKTVPEFVAWLKAQNGKASYASSGTGQSPHLSAAWFLQLTGT 708
LSRRA L AA +LP A LLP A W+PSQ ++IVVPAAPGGTTDIVARLLAA LQQAWGQSCVVDNKSGAGGVIGS EVVK+ PDG+T LMGNIGPQSIAYSLYRNMPY SL PVSCV+TAPNVLV+HPSVPAKTVPEFVAWLKAQNGK SYASSGTGQSPHLS AWFLQLTGT
Sbjct: 5 LSRRAALAAATILPVANLLPRTAAADGAWRPSQGIRIVVPAAPGGTTDIVARLLAAFLQQAWGQSCVVDNKSGAGGVIGSNEVVKATPDGTTALMGNIGPQSIAYSLYRNMPYGPKSLAPVSCVITAPNVLVVHPSVPAKTVPEFVAWLKAQNGKVSYASSGTGQSPHLSGAWFLQLTGT 184
BLAST of mRNA_P-wetherbeei_contig15956.1.1 vs. uniprot
Match: A0A5C5TP40_9HYPH (Tripartite tricarboxylate transporter substrate binding protein n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A5C5TP40_9HYPH) HSP 1 Score: 258 bits (660), Expect = 1.510e-82 Identity = 136/183 (74.32%), Postives = 153/183 (83.61%), Query Frame = 1
Query: 157 TMIRRLSRRATLGAAAVLPAALLPWGLGAQSPWKPSQAVKIVVPAAPGGTTDIVARLLAAHLQQAWGQSCVVDNKSGAGGVIGSAEVVKSAPDGSTILMGNIGPQSIAYSLYRNMPYTQASLIPVSCVLTAPNVLVLHPSVPAKTVPEFVAWLKAQNGKASYASSGTGQSPHLSAAWFLQLTG 705
T RLSRR + AA LPA P + A + W+P QAV+IVVPAAPGGTTDIVARLLA+HLQQ WGQS VVDNKSGAGGV+GS EVV++APDG T+LMGNIGPQSIAYSLYRN+PY SLIPVS V+TAPNVLV+HP+VPAKTVPEFV WL+ +NG+ASYASSGTGQSPHLS A FLQL G
Sbjct: 2 TRFTRLSRRTVMAGAAALPALAAPAVVRADA-WRPKQAVRIVVPAAPGGTTDIVARLLASHLQQRWGQSVVVDNKSGAGGVVGSTEVVRAAPDGLTMLMGNIGPQSIAYSLYRNLPYKPESLIPVSNVITAPNVLVVHPAVPAKTVPEFVTWLRGRNGEASYASSGTGQSPHLSGALFLQLVG 183
BLAST of mRNA_P-wetherbeei_contig15956.1.1 vs. uniprot
Match: UPI00200B0861 (tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Roseomonas sp. NAR14 TaxID=2937791 RepID=UPI00200B0861) HSP 1 Score: 225 bits (574), Expect = 1.410e-69 Identity = 115/182 (63.19%), Postives = 136/182 (74.73%), Query Frame = 1
Query: 160 MIRRLSRRATLGAAAVLPAALLPWGLGAQSPWKPSQAVKIVVPAAPGGTTDIVARLLAAHLQQAWGQSCVVDNKSGAGGVIGSAEVVKSAPDGSTILMGNIGPQSIAYSLYRNMPYTQASLIPVSCVLTAPNVLVLHPSVPAKTVPEFVAWLKAQNGKASYASSGTGQSPHLSAAWFLQLTG 705
M+ LSRRA L LL PW+PSQ V+IVVPAA GGTTDI+ RLLAAHLQ WG V +N++GAGG+IG+ EVV+S PDG T+L GNIGPQ+IAYSL+RN+PY L+PVS ++ PNVLV+HPS+PA+TVPEFVAWL+A NGKASY S G GQSPHLSA WFLQL G
Sbjct: 1 MVTPLSRRAALALPLAASLPLLAPRAARAEPWRPSQQVRIVVPAAAGGTTDIMGRLLAAHLQTRWGLPAVAENRTGAGGIIGTQEVVRSKPDGLTLLSGNIGPQAIAYSLFRNLPYRPEDLLPVSNLIRGPNVLVIHPSIPAQTVPEFVAWLRANNGKASYGSPGVGQSPHLSAVWFLQLIG 182
BLAST of mRNA_P-wetherbeei_contig15956.1.1 vs. uniprot
Match: UPI001C2C8D76 (tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Siccirubricoccus sp. G192 TaxID=2849651 RepID=UPI001C2C8D76) HSP 1 Score: 215 bits (548), Expect = 9.530e-66 Identity = 113/179 (63.13%), Postives = 136/179 (75.98%), Query Frame = 1
Query: 172 LSRRATLGAAAVLPAALLPWGLGAQSPWKPSQAVKIVVPAAPGGTTDIVARLLAAHLQQAWGQSCVVDNKSGAGGVIGSAEVVKSAPDGSTILMGNIGPQSIAYSLYRNMPYTQASLIPVSCVLTAPNVLVLHPSVPAKTVPEFVAWLKAQNGKASYASSGTGQSPHLSAAWFLQLTGT 708
+SRR +G A AA + AQS W+PS+ VKI+VPAAPGGTTDI+ RLLA +LQ +WGQ+ VV+NKSGAGG IG+ EVV++ PDG T+LMGNIGPQSIAYSL+RN+PY L+PVS ++ PNVLVLHPSVPA +VPEFV +LK GK SY + G GQSPHLS WF QLT T
Sbjct: 1 MSRRTIIGILAAAQAARI---ARAQSRWRPSETVKIIVPAAPGGTTDIMGRLLANYLQSSWGQNAVVENKSGAGGTIGTMEVVRARPDGHTMLMGNIGPQSIAYSLFRNLPYGPGDLVPVSNMIRGPNVLVLHPSVPAGSVPEFVRYLKQNPGKLSYGTPGIGQSPHLSGVWFHQLTET 176
BLAST of mRNA_P-wetherbeei_contig15956.1.1 vs. uniprot
Match: UPI001CA5E978 (tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Roseomonas sp. HJA6 TaxID=2846776 RepID=UPI001CA5E978) HSP 1 Score: 215 bits (548), Expect = 9.530e-66 Identity = 111/180 (61.67%), Postives = 137/180 (76.11%), Query Frame = 1
Query: 169 RLSRRATLGAAAVLPAALLPWGLGAQSPWKPSQAVKIVVPAAPGGTTDIVARLLAAHLQQAWGQSCVVDNKSGAGGVIGSAEVVKSAPDGSTILMGNIGPQSIAYSLYRNMPYTQASLIPVSCVLTAPNVLVLHPSVPAKTVPEFVAWLKAQNGKASYASSGTGQSPHLSAAWFLQLTGT 708
RLSRRA L A+LP A + W+P Q V+I+VPAAPGGTTDI+ARLL +LQ WG VVDN+SGAGG IG+ E V++ PDG T+LMGNIGPQ+IAYSL+RN+ Y SL+ V+ V+ PNVLV++PSVPA+TVPEFVAWLK ++G+A+Y +SG GQSPHLSA WF QLT T
Sbjct: 3 RLSRRAALSLPALLPTAAI------AETWRPGQPVRIIVPAAPGGTTDIMARLLGQYLQSRWGTPVVVDNRSGAGGTIGTMEAVRATPDGRTMLMGNIGPQAIAYSLFRNLQYRPDSLVAVANVIRGPNVLVVNPSVPAQTVPEFVAWLKREDGRAAYGTSGLGQSPHLSAVWFTQLTET 176
BLAST of mRNA_P-wetherbeei_contig15956.1.1 vs. uniprot
Match: UPI001057C0FF (tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Paracraurococcus ruber TaxID=77675 RepID=UPI001057C0FF) HSP 1 Score: 213 bits (542), Expect = 7.860e-65 Identity = 113/180 (62.78%), Postives = 137/180 (76.11%), Query Frame = 1
Query: 169 RLSRRATLGAAAVLPAALLPWGLGAQSPWKPSQAVKIVVPAAPGGTTDIVARLLAAHLQQAWGQSCVVDNKSGAGGVIGSAEVVKSAPDGSTILMGNIGPQSIAYSLYRNMPYTQASLIPVSCVLTAPNVLVLHPSVPAKTVPEFVAWLKAQNGKASYASSGTGQSPHLSAAWFLQLTGT 708
RL+RRA L VLP A P+ AQ W+P+QA++I+VPAAPGGT DI ARLLA LQQ +GQ+CVV+N+SGAGGVIG+AEVV++ PDG T+L+GNIGPQ+I SL+RN+PY Q L+PV + PNVLV+HPSVPA +VPE VA LKA GK SY S G GQSPHL+ WF Q TGT
Sbjct: 3 RLTRRAAL----VLPLAA-PFAARAQGGWRPTQAIRIIVPAAPGGTADISARLLAPFLQQHYGQNCVVENRSGAGGVIGTAEVVRATPDGHTLLLGNIGPQAIGLSLFRNLPYRQQDLLPVCGTVRGPNVLVVHPSVPANSVPELVAHLKANPGKLSYGSPGVGQSPHLTGVWFNQATGT 177 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15956.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig15956.1.1 >prot_P-wetherbeei_contig15956.1.1 ID=prot_P-wetherbeei_contig15956.1.1|Name=mRNA_P-wetherbeei_contig15956.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=236bp PPWHGPQERGDEPAGRARRFGGDRTNILIREMWRICQCGTLAWSTREAMLback to top mRNA from alignment at P-wetherbeei_contig15956:1..734- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig15956.1.1 ID=mRNA_P-wetherbeei_contig15956.1.1|Name=mRNA_P-wetherbeei_contig15956.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=734bp|location=Sequence derived from alignment at P-wetherbeei_contig15956:1..734- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig15956:1..734- >mRNA_P-wetherbeei_contig15956.1.1 ID=mRNA_P-wetherbeei_contig15956.1.1|Name=mRNA_P-wetherbeei_contig15956.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=708bp|location=Sequence derived from alignment at P-wetherbeei_contig15956:1..734- (Phaeothamnion wetherbeei SAG_119_79)back to top |