mRNA_P-wetherbeei_contig15943.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15943.2.1
Unique NamemRNA_P-wetherbeei_contig15943.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15943.2.1 vs. uniprot
Match: A0A127ES88_9HYPH (Uncharacterized protein n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127ES88_9HYPH)

HSP 1 Score: 167 bits (424), Expect = 1.890e-50
Identity = 92/148 (62.16%), Postives = 112/148 (75.68%), Query Frame = 1
Query:   34 AAALAASVSLASAQS-RVEVGVLECTGTSTSFIIGSVTELGCAFKPSSGGPSEPYSATIRRVGLDIGINNTTVIAWAVFAPTRQIGPRDLAGNYGGVSANATIGVGLGANALVGGSNSTIALQPASVQAQTGLSIAAGISGLELRAGR 474
            A AL A+ + A AQS RVEVGV+EC G++TSF++GSVTELGC F+ S   P EPY ATIRR G+DIG     V+AWAV APTR I   DL G Y G SA+AT+G+G+GAN LVGGSN+T ALQP S QAQTGLS+AAG++ ++L  GR
Sbjct:   10 ATALVATATTAMAQSSRVEVGVIECRGSTTSFVVGSVTELGCVFRASDNSPPEPYHATIRRAGVDIGFPQQVVVAWAVMAPTRGIQRGDLRGTYVGASASATVGLGVGANGLVGGSNNTFALQPLSGQAQTGLSVAAGVASMDLMPGR 157          
BLAST of mRNA_P-wetherbeei_contig15943.2.1 vs. uniprot
Match: A0A1M7TA58_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium erythrophlei TaxID=1437360 RepID=A0A1M7TA58_9BRAD)

HSP 1 Score: 165 bits (417), Expect = 2.260e-49
Identity = 92/150 (61.33%), Postives = 113/150 (75.33%), Query Frame = 1
Query:   28 VSAAALAASVSLASAQSRVEVGVLECTG-TSTSFIIGSVTELGCAFKPSSGGPSEPYSATIRRVGLDIGINNTTVIAWAVFAPTRQIGPRDLAGNYGGVSANATIGVGLGANALVGGSNSTIALQPASVQAQTGLSIAAGISGLELRAGR 474
            V+AAAL AS+  A+AQ RV+VGVLEC G  S  FI+GSVT LGC  +   G P + Y ATIR+VG+D+GI + T +AW VFAPTRQ+GP D++GNY G   +ATIGVG G N LVGGSN++IALQP S+Q Q GLS+AAG+  LELR GR
Sbjct:   10 VAAAALTASLGGANAQERVQVGVLECRGGASIGFIVGSVTNLGCVLR-IDGVPEDRYVATIRKVGVDLGITSETALAWGVFAPTRQLGPGDISGNYAGAQGSATIGVGAGGNVLVGGSNNSIALQPLSLQGQVGLSVAAGLESLELRPGR 158          
BLAST of mRNA_P-wetherbeei_contig15943.2.1 vs. uniprot
Match: A0A1Q3W4V6_9BRAD (Uncharacterized protein n=1 Tax=Afipia sp. 64-13 TaxID=1895701 RepID=A0A1Q3W4V6_9BRAD)

HSP 1 Score: 160 bits (405), Expect = 1.500e-47
Identity = 85/149 (57.05%), Postives = 112/149 (75.17%), Query Frame = 1
Query:   31 SAAALAASVSLASAQSRVEVGVLECTG-TSTSFIIGSVTELGCAFKPSSGGPSEPYSATIRRVGLDIGINNTTVIAWAVFAPTRQIGPRDLAGNYGGVSANATIGVGLGANALVGGSNSTIALQPASVQAQTGLSIAAGISGLELRAGR 474
            SAA L ASV+L  AQ RV+ G LEC G +S   ++GSVT LGC F+ S G P + Y AT++++GLD+GI   + ++W V APT Q+GP DL+GNY GV+A+A +GVGLGANA++GGS ++ ALQP SVQ QTGL++AAG+  LELR GR
Sbjct:   11 SAALLVASVTLTQAQDRVQAGTLECRGGSSVGMVVGSVTNLGCVFR-SQGRPDDLYVATVKKIGLDLGITEASALSWIVLAPTAQLGPGDLSGNYAGVNASAAVGVGLGANAMIGGSANSFALQPLSVQGQTGLNVAAGVQSLELRPGR 158          
BLAST of mRNA_P-wetherbeei_contig15943.2.1 vs. uniprot
Match: UPI0017A30997 (DUF992 domain-containing protein n=1 Tax=Rhodopseudomonas sp. TaxID=1078 RepID=UPI0017A30997)

HSP 1 Score: 159 bits (403), Expect = 2.920e-47
Identity = 89/153 (58.17%), Postives = 111/153 (72.55%), Query Frame = 1
Query:   19 IGFVSAAALAASVSLASAQSRVEVGVLECTG-TSTSFIIGSVTELGCAFKPSSGGPSEPYSATIRRVGLDIGINNTTVIAWAVFAPTRQIGPRDLAGNYGGVSANATIGVGLGANALVGGSNSTIALQPASVQAQTGLSIAAGISGLELRAGR 474
            +GF +AA +A +    + QSRV++GVLEC G  S  FI+GSVT LGC  + S G P  PY ATIR+VGLD+GI   T +AWAVFAP  + GP DLAGNY G   +A++GVGLGAN LVGGS ++IALQP S+Q QTGL++A G+  LELR GR
Sbjct:    8 LGFAAAALIAGAAQ--AQQSRVQLGVLECRGGASVGFIVGSVTNLGCVLR-SDGRPDAPYVATIRKVGLDLGITQETALAWAVFAPVERFGPGDLAGNYAGAQGSASVGVGLGANVLVGGSQNSIALQPLSLQGQTGLNVALGLEDLELRPGR 157          
BLAST of mRNA_P-wetherbeei_contig15943.2.1 vs. uniprot
Match: A0A127F1S5_9HYPH (Uncharacterized protein n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127F1S5_9HYPH)

HSP 1 Score: 160 bits (404), Expect = 3.080e-47
Identity = 93/157 (59.24%), Postives = 118/157 (75.16%), Query Frame = 1
Query:    7 MRLSIGFVSAAALAASVSLASAQSRVEVGVLECTGTSTSFIIGSVTELGCAFKPSSGGPSEPYSATIRRVGLDIGINNTTVIAWAVFAPTRQIGPRDLAGNYGGVSANATIGVGLGANALVGGSNSTIALQPASVQAQTGLSIAAGISGLELR-AGR 474
            MR+  G   AAALAAS S A AQ+ VE G LEC G + +F++GS+T+L C F+P+ G P + Y  TIRR GLDIG  ++TV+ W V+APT ++GP  LAG+YGG +A+ T GVG+GANAL GGSNSTI+LQP SVQ QTGLS AAGI+G++L  AGR
Sbjct:    1 MRVFAGLAVAAALAASSSQALAQNAVEAGYLECRGQTQAFVVGSITKLECLFRPTFGRP-QAYLGTIRRAGLDIGWTDSTVLHWQVYAPTNRLGPYALAGSYGGGAASVTFGVGVGANALWGGSNSTISLQPLSVQGQTGLSAAAGIAGMDLEPAGR 156          
BLAST of mRNA_P-wetherbeei_contig15943.2.1 vs. uniprot
Match: A0A0D7PZ10_9BRAD (Uncharacterized protein n=7 Tax=Bradyrhizobium TaxID=374 RepID=A0A0D7PZ10_9BRAD)

HSP 1 Score: 157 bits (397), Expect = 2.530e-46
Identity = 90/148 (60.81%), Postives = 110/148 (74.32%), Query Frame = 1
Query:   37 AALAASVSLASAQSR-VEVGVLECTG-TSTSFIIGSVTELGCAFKPSSGGPSEPYSATIRRVGLDIGINNTTVIAWAVFAPTRQIGPRDLAGNYGGVSANATIGVGLGANALVGGSNSTIALQPASVQAQTGLSIAAGISGLELRAGR 474
            A+L ASV+ ASAQSR V+VGVLEC G  S  F++GSVT LGC  +   G P + Y ATIR+VGLD+GI   T +AW VFAP  ++GP DL+GNY G   +A+IGVGLG N LVGGSN++IALQP SVQ Q GL++AAG+  LELR GR
Sbjct:   13 ASLVASVAGASAQSRLVQVGVLECRGGASIGFVVGSVTNLGCVLRVD-GVPDDRYVATIRKVGLDLGITQETALAWGVFAPVNRLGPGDLSGNYAGAQGSASIGVGLGGNVLVGGSNNSIALQPLSVQGQVGLNVAAGLESLELRPGR 159          
BLAST of mRNA_P-wetherbeei_contig15943.2.1 vs. uniprot
Match: A0A533J2X4_9BRAD (DUF992 domain-containing protein n=1 Tax=Bradyrhizobium icense TaxID=1274631 RepID=A0A533J2X4_9BRAD)

HSP 1 Score: 157 bits (396), Expect = 3.480e-46
Identity = 88/149 (59.06%), Postives = 113/149 (75.84%), Query Frame = 1
Query:   34 AAALAASVSLASAQ-SRVEVGVLECTG-TSTSFIIGSVTELGCAFKPSSGGPSEPYSATIRRVGLDIGINNTTVIAWAVFAPTRQIGPRDLAGNYGGVSANATIGVGLGANALVGGSNSTIALQPASVQAQTGLSIAAGISGLELRAGR 474
            A AL+ASV+ ASAQ ++V+VGVLEC G  S  FI+GSVT LGC  + ++G P + Y AT+R+VGLD+GI   + +AW VFAP  ++GP DL+GNY G   +AT+GVG+G N LVGGSN++IALQP SVQ Q G+SIAAG+  LELR GR
Sbjct:   11 ALALSASVTTASAQQAKVQVGVLECRGGASVGFIVGSVTNLGCVLR-AAGQPDDFYVATVRKVGLDLGITQESALAWGVFAPVNRLGPGDLSGNYAGAQGSATLGVGVGGNVLVGGSNNSIALQPLSVQGQVGVSIAAGLESLELRPGR 158          
BLAST of mRNA_P-wetherbeei_contig15943.2.1 vs. uniprot
Match: A0A318T8F9_9BRAD (Uncharacterized protein DUF992 n=1 Tax=Rhodopseudomonas faecalis TaxID=99655 RepID=A0A318T8F9_9BRAD)

HSP 1 Score: 156 bits (395), Expect = 4.790e-46
Identity = 89/150 (59.33%), Postives = 110/150 (73.33%), Query Frame = 1
Query:   28 VSAAALAASVSLASAQSRVEVGVLECTG-TSTSFIIGSVTELGCAFKPSSGGPSEPYSATIRRVGLDIGINNTTVIAWAVFAPTRQIGPRDLAGNYGGVSANATIGVGLGANALVGGSNSTIALQPASVQAQTGLSIAAGISGLELRAGR 474
            ++AAALA   S  + QSRV++GVLEC G  S  FI+GSVT LGC  + S G P EPY ATIR+VGLDIGI   T +AWAVFAP  ++GP  LAGNY G   +A +GVG+GAN LVGGS++ I+LQP S+Q QTG ++A G+ GLELR GR
Sbjct:   10 IAAAALAIG-SAEAQQSRVKIGVLECRGGASVGFIVGSVTHLGCLLR-SEGRPDEPYVATIRKVGLDIGITQETGLAWAVFAPVERLGPGALAGNYAGAQGSAAVGVGVGANVLVGGSDNVISLQPLSLQGQTGFNVAVGLEGLELRPGR 157          
BLAST of mRNA_P-wetherbeei_contig15943.2.1 vs. uniprot
Match: A0A5D3KA45_9BRAD (DUF992 domain-containing protein n=7 Tax=Bradyrhizobium TaxID=374 RepID=A0A5D3KA45_9BRAD)

HSP 1 Score: 156 bits (395), Expect = 5.090e-46
Identity = 89/149 (59.73%), Postives = 110/149 (73.83%), Query Frame = 1
Query:   34 AAALAASVSLASAQSR-VEVGVLECTG-TSTSFIIGSVTELGCAFKPSSGGPSEPYSATIRRVGLDIGINNTTVIAWAVFAPTRQIGPRDLAGNYGGVSANATIGVGLGANALVGGSNSTIALQPASVQAQTGLSIAAGISGLELRAGR 474
            AA+L ASV  ASAQSR V+VGVLEC G  S   ++GSVT LGC  +   G P + Y ATIR+VG+D+GI   T +AW VFAP  ++GP DL+GNYGG   +A++GVGLG N LVGGSN++IALQP SVQ Q GL++AAG+  LELR GR
Sbjct:   12 AASLVASVVGASAQSRLVQVGVLECRGGASVGLVVGSVTNLGCVLRVD-GVPDDRYVATIRKVGIDLGITQETALAWGVFAPVNRLGPGDLSGNYGGAQGSASVGVGLGGNVLVGGSNNSIALQPLSVQGQVGLNVAAGLESLELRPGR 159          
BLAST of mRNA_P-wetherbeei_contig15943.2.1 vs. uniprot
Match: UPI001BAD1E28 (DUF992 domain-containing protein n=1 Tax=Bradyrhizobium manausense TaxID=989370 RepID=UPI001BAD1E28)

HSP 1 Score: 156 bits (395), Expect = 5.250e-46
Identity = 89/150 (59.33%), Postives = 110/150 (73.33%), Query Frame = 1
Query:   34 AAALAASVSLASAQSR--VEVGVLECTG-TSTSFIIGSVTELGCAFKPSSGGPSEPYSATIRRVGLDIGINNTTVIAWAVFAPTRQIGPRDLAGNYGGVSANATIGVGLGANALVGGSNSTIALQPASVQAQTGLSIAAGISGLELRAGR 474
            AA+L AS++ ASAQS   V+VGVLEC G  S  FI+GSVT LGC  +   G P + Y ATIR+VG+D+GI   T +AW VFAP  ++GP DLAGNY G   +A++GVGLG N LVGGSN++IALQP SVQ Q GL++AAG+  LELR GR
Sbjct:   12 AASLVASIASASAQSSRMVQVGVLECRGGASVGFIVGSVTNLGCVLRVD-GLPDDRYVATIRKVGIDLGITQETALAWGVFAPVNRLGPGDLAGNYAGAQGSASVGVGLGGNVLVGGSNNSIALQPLSVQGQVGLNVAAGLESLELRPGR 160          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15943.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A127ES88_9HYPH1.890e-5062.16Uncharacterized protein n=1 Tax=Rhodoplanes sp. Z2... [more]
A0A1M7TA58_9BRAD2.260e-4961.33Uncharacterized protein n=1 Tax=Bradyrhizobium ery... [more]
A0A1Q3W4V6_9BRAD1.500e-4757.05Uncharacterized protein n=1 Tax=Afipia sp. 64-13 T... [more]
UPI0017A309972.920e-4758.17DUF992 domain-containing protein n=1 Tax=Rhodopseu... [more]
A0A127F1S5_9HYPH3.080e-4759.24Uncharacterized protein n=1 Tax=Rhodoplanes sp. Z2... [more]
A0A0D7PZ10_9BRAD2.530e-4660.81Uncharacterized protein n=7 Tax=Bradyrhizobium Tax... [more]
A0A533J2X4_9BRAD3.480e-4659.06DUF992 domain-containing protein n=1 Tax=Bradyrhiz... [more]
A0A318T8F9_9BRAD4.790e-4659.33Uncharacterized protein DUF992 n=1 Tax=Rhodopseudo... [more]
A0A5D3KA45_9BRAD5.090e-4659.73DUF992 domain-containing protein n=7 Tax=Bradyrhiz... [more]
UPI001BAD1E285.250e-4659.33DUF992 domain-containing protein n=1 Tax=Bradyrhiz... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15943contigP-wetherbeei_contig15943:557..1033 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1038867.AXAY01000029_gene1616
Preferred nameMA20_05225
PFAMsDUF992
Model size477
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.4e-47
EggNOG OGs2CPI3@1|root,32SJ7@2|Bacteria,1N1IR@1224|Proteobacteria,2UBVS@28211|Alphaproteobacteria,3JX44@41294|Bradyrhizobiaceae
DescriptionProtein of unknown function (DUF992)
Cds size474
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186072.3738892-CDS-P-wetherbeei_contig15943:556..10301683186072.3738892-CDS-P-wetherbeei_contig15943:556..1030Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15943 557..1030 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186072.3868878-UTR-P-wetherbeei_contig15943:1030..10331683186072.3868878-UTR-P-wetherbeei_contig15943:1030..1033Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15943 1031..1033 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15943.2.1prot_P-wetherbeei_contig15943.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15943 557..1030 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15943.2.1

>prot_P-wetherbeei_contig15943.2.1 ID=prot_P-wetherbeei_contig15943.2.1|Name=mRNA_P-wetherbeei_contig15943.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=158bp
MMRLSIGFVSAAALAASVSLASAQSRVEVGVLECTGTSTSFIIGSVTELG
CAFKPSSGGPSEPYSATIRRVGLDIGINNTTVIAWAVFAPTRQIGPRDLA
GNYGGVSANATIGVGLGANALVGGSNSTIALQPASVQAQTGLSIAAGISG
LELRAGR*
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mRNA from alignment at P-wetherbeei_contig15943:557..1033-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15943.2.1 ID=mRNA_P-wetherbeei_contig15943.2.1|Name=mRNA_P-wetherbeei_contig15943.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=477bp|location=Sequence derived from alignment at P-wetherbeei_contig15943:557..1033- (Phaeothamnion wetherbeei SAG_119_79)
ACCATGATGCGTTTGTCTATCGGTTTTGTGTCGGCGGCCGCGTTGGCCGC ATCGGTGTCTTTGGCGTCAGCCCAATCGCGGGTGGAGGTGGGCGTGCTGG AATGCACCGGCACCTCGACCAGCTTCATCATCGGCTCGGTGACTGAGCTT GGCTGCGCGTTCAAGCCGTCGTCGGGCGGGCCGTCGGAGCCTTACTCGGC GACGATCCGCCGTGTCGGCCTCGACATCGGCATCAACAACACCACGGTGA TCGCGTGGGCGGTGTTCGCGCCGACCCGTCAAATCGGTCCCCGCGATCTT GCCGGCAACTACGGCGGCGTGTCCGCCAATGCCACGATCGGCGTCGGACT TGGCGCTAACGCCCTGGTCGGCGGTTCGAACAGCACGATCGCGTTGCAGC CGGCAAGCGTGCAGGCCCAGACCGGCCTGAGCATCGCGGCCGGTATTTCG GGACTGGAGTTGCGCGCCGGCCGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15943:557..1033-

>mRNA_P-wetherbeei_contig15943.2.1 ID=mRNA_P-wetherbeei_contig15943.2.1|Name=mRNA_P-wetherbeei_contig15943.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=474bp|location=Sequence derived from alignment at P-wetherbeei_contig15943:557..1033- (Phaeothamnion wetherbeei SAG_119_79)
ATGATGCGTTTGTCTATCGGTTTTGTGTCGGCGGCCGCGTTGGCCGCATC
GGTGTCTTTGGCGTCAGCCCAATCGCGGGTGGAGGTGGGCGTGCTGGAAT
GCACCGGCACCTCGACCAGCTTCATCATCGGCTCGGTGACTGAGCTTGGC
TGCGCGTTCAAGCCGTCGTCGGGCGGGCCGTCGGAGCCTTACTCGGCGAC
GATCCGCCGTGTCGGCCTCGACATCGGCATCAACAACACCACGGTGATCG
CGTGGGCGGTGTTCGCGCCGACCCGTCAAATCGGTCCCCGCGATCTTGCC
GGCAACTACGGCGGCGTGTCCGCCAATGCCACGATCGGCGTCGGACTTGG
CGCTAACGCCCTGGTCGGCGGTTCGAACAGCACGATCGCGTTGCAGCCGG
CAAGCGTGCAGGCCCAGACCGGCCTGAGCATCGCGGCCGGTATTTCGGGA
CTGGAGTTGCGCGCCGGCCGCTGA
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