mRNA_P-wetherbeei_contig15870.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15870.1.1
Unique NamemRNA_P-wetherbeei_contig15870.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15870.1.1 vs. uniprot
Match: D7G5A8_ECTSI (Na_H_antiporter domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5A8_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 1.000e-33
Identity = 82/174 (47.13%), Postives = 109/174 (62.64%), Query Frame = 1
Query:   13 VSGEKFAWLVHIMAVSLASLSPVSSWAGLQIGYTQAVLDGLAQQDPGGDGXXXXXRDGFVTVLATLPYRFFPLLYLGLLLAVVLSGRDLGPMGASEEAATATNGGATASTKM-ASGAAAEAAETVGTAQQPAPALGPLDPRPDTPLRAYNALVPFSVVVAVTVGGMLLDGRSKL 531
            VS EKFAWLVH + V+LASLSP+SSW GLQIGYT AVLD L               DGF+ VL +LP+RFFPL YL L++ V++SG+D GPM ++E++ ++       +T+  ASG+  E     G           + P+  TPLR+ NALVPF+ V+ VT  GM+LDG SK+
Sbjct:  257 VSPEKFAWLVHSVGVALASLSPISSWVGLQIGYTAAVLDSLGAP-----------LDGFLVVLRSLPFRFFPLFYLLLIIIVLVSGKDFGPMASAEDSGSSDAVSGDQNTESPASGSQLEGDSAAGXX------XXGITPKAGTPLRSRNALVPFAAVIGVTFLGMILDGISKI 413          
BLAST of mRNA_P-wetherbeei_contig15870.1.1 vs. uniprot
Match: A0A7S0LMT7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LMT7_9EUKA)

HSP 1 Score: 125 bits (313), Expect = 1.220e-32
Identity = 82/185 (44.32%), Postives = 106/185 (57.30%), Query Frame = 1
Query:    7 LKVSGEKFAWLVHIMAVSLASLSPVSSWAGLQIGYTQAVLDGLAQQDPGGDGXXXXXRDGFVTVLATLPYRFFPLLYLGLLLAVVLSGRDLGPMGASEEAATATNGGATASTKMA-----SGAAAEAAETVGTAQQP----APALGPLDPRPDTPLRAYNALVPFSVVVAVTVGGMLLDGRSKLL 534
            L V+ E+FA+LVH+MAV LASLSPVSSW GLQIGY   V   L   D           D FV+ + T+PYRFFP+L L LL  +++S R+LGPM   +   T++   A  S + A     +G A   + T     Q     AP+ GPL P+P T LR  NAL+PF  ++  T  GMLLDG  K+L
Sbjct:   34 LNVAPERFAFLVHVMAVGLASLSPVSSWVGLQIGYVADVYKQLGLPD-----------DPFVSTMRTIPYRFFPVLLLALLPILLISRRELGPMANLQAPVTSSTAAAILSEEAAPTVWVNGVALTESWTESHELQSEPAEAPSAGPLTPKPGTKLRVVNALLPFGTIIFATFAGMLLDGAVKIL 207          
BLAST of mRNA_P-wetherbeei_contig15870.1.1 vs. uniprot
Match: A0A7S0P500_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P500_9EUKA)

HSP 1 Score: 127 bits (319), Expect = 7.320e-31
Identity = 85/207 (41.06%), Postives = 107/207 (51.69%), Query Frame = 1
Query:    7 LKVSGEKFAWLVHIMAVSLASLSPVSSWAGLQIGYTQAVLDGLAQQDPGGDGXXXXXRDGFVTVLATLPYRFFPLLYLGLLLAVVLSGRDLGPM------------------------------GASEEAATATNGGATASTKMASGAAAEAAETVGTAQQPAPALGPLDPRPDTPLRAYNALVPFSVVVAVTVGGMLLDGRSKLLA 537
            L V+ E+FA +VH+MAV LASLSPVSSW GLQIGY   V   L  +D           D FV+ + T+PYRFFP+L L LL  ++ +GRD+GPM                              GA  + A               GAA E+   V     P+P +GPLDP+P T LRA NAL+PF  ++  T  GMLLDG SK+LA
Sbjct:  212 LHVAPERFALVVHVMAVCLASLSPVSSWVGLQIGYVADVYKQLGLED-----------DPFVSTMRTIPYRFFPVLLLALLPILLATGRDVGPMASLPPPEPTPSAPAAAAMLREAAIPVEESFGADSDEAXXXXXXXXXXXXXXGGAADESLAAVEERALPSPPVGPLDPKPGTKLRAVNALLPFGSIIVATFAGMLLDGASKVLA 407          
BLAST of mRNA_P-wetherbeei_contig15870.1.1 vs. uniprot
Match: A0A7S3RS55_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RS55_9SPIT)

HSP 1 Score: 112 bits (280), Expect = 3.750e-28
Identity = 70/157 (44.59%), Postives = 94/157 (59.87%), Query Frame = 1
Query:   61 LASLSPVSSWAGLQIGYTQAVLDGLAQQDPGGDGXXXXXRDGFVTVLATLPYRFFPLLYLGLLLAVVLSGRDLGPMGASEEAATATNGGATASTKMASGAAAEAAETVGTAQQPAPALGPLDPRPDTPLRAYNALVPFSVVVAVTVGGMLLDGRSKL 531
            LAS+SPVSSWAGLQIGY   VL  + + D           D F+TVL+++ +RFFPL+ L L+   V  G+D+GP+G +    T+ +  A    +  SG A++    VG         GPLDP+P TPLR  NALVPF  +V VT GGM+LDG +K+
Sbjct:    1 LASISPVSSWAGLQIGYVAGVLKSIGRGD-----------DPFLTVLSSVKFRFFPLMMLALVPISVFLGKDIGPLGGARYK-TSNSAQAREGRRPGSGTASQETILVGEGDGDG---GPLDPKPGTPLRPINALVPFGTIVLVTFGGMILDGITKV 142          
BLAST of mRNA_P-wetherbeei_contig15870.1.1 vs. uniprot
Match: A0A8J5X8U4_DIALT (Na_H_antiporter domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X8U4_DIALT)

HSP 1 Score: 112 bits (281), Expect = 1.030e-25
Identity = 72/177 (40.68%), Postives = 93/177 (52.54%), Query Frame = 1
Query:    1 AGLKVSGEKFAWLVHIMAVSLASLSPVSSWAGLQIGYTQAVLDGLAQQDPGGDGXXXXXRDGFVTVLATLPYRFFPLLYLGLLLAVVLSGRDLGPMGASEEAATATNGGATASTKMASGAAAEAAETVGTAQQPAPALGPLDPRPDTPLRAYNALVPFSVVVAVTVGGMLLDGRSKL 531
            AGL V  +KFA +VH M   +ASLSPVSSW GLQ+GY    +                  DGF  +LAT+PYR  PL+++ L+   V + RD G +  +E AA        A   +   A A  A      + PA   GPLDP+P TPLR  NAL+PF  ++A    GML DG +KL
Sbjct:  211 AGLSV--QKFALIVHAMGTCIASLSPVSSWTGLQLGYVAGAVAAAG-----------VPMDGFSMMLATIPYRLLPLIFVALIAVSVFAARDFGGIADAEAAAXXXXX---ADAPLTGEAGARGATNGDAYEAPAGEAGPLDPKPGTPLRPLNALLPFGAIIACAFFGMLADGGAKL 371          
BLAST of mRNA_P-wetherbeei_contig15870.1.1 vs. uniprot
Match: A0A8J2WUT3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WUT3_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.250e-25
Identity = 74/177 (41.81%), Postives = 95/177 (53.67%), Query Frame = 1
Query:    7 LKVSGEKFAWLVHIMAVSLASLSPVSSWAGLQIGYTQAVLDGLAQQDPGGDGXXXXXRDGFVTVLATLPYRFFPLLYLGLLLAVVLSGRDLGPMGASEEAATATNGGATASTKMASGAAAEAAETVGTAQQPAPALGPLDPRPDTPLRAYNALVPFSVVVAVTVGGMLLDGRSKLLA 537
            L+V  EKFA L+H +AV +++ SPVSSW G Q+G       G+    P G          FV  L TLPYRFFPL  L  + A V +GRD GPM    +A   +    T +T           E  G A   AP +G ++P P TPLRA NALVPF  ++  T+GGM+LDGR  + A
Sbjct:  186 LRVCKEKFAGLLHFVAVCVSASSPVSSWIGQQVGMVSTATAGV----PAGK-----LPSPFVLTLGTLPYRFFPLCLLAFVAATVTTGRDFGPM---RDAVVKSERETTTTT-----------EDDGDA---APDMGAMEPSPSTPLRAVNALVPFGTIIGATLGGMILDGRKAVKA 336          
BLAST of mRNA_P-wetherbeei_contig15870.1.1 vs. uniprot
Match: A0A7S0HB77_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HB77_9EUKA)

HSP 1 Score: 105 bits (262), Expect = 8.090e-25
Identity = 69/175 (39.43%), Postives = 92/175 (52.57%), Query Frame = 1
Query:    7 LKVSGEKFAWLVHIMAVSLASLSPVSSWAGLQIGYTQAVLDGLAQQDPGGDGXXXXXRDGFVTVLATLPYRFFPLLYLGLLLAVVLSGRDLGPMGASEEAATATNGGATASTKMASGAAAEAAETVGTAQQPAPALGPLDPRPDTPLRAYNALVPFSVVVAVTVGGMLLDGRSKL 531
            +K++  KFA++ H + V +AS+SP+SSW G+QIG+   V + L        G      D F   +ATL YRF PLL L  LL   ++GRD GPM   E AA        +S+K    AAA + +            GPLDP   TPLRA NAL+PF  V+ V  GGM+  G   +
Sbjct:   16 VKIATAKFAFVAHTVGVCIASMSPISSWVGMQIGFIGGVYETL--------GGPWAKADPFSGFIATLQYRFLPLLMLVFLLINAVTGRDFGPMLDEERAALLLPDAPASSSKEGERAAAPSPD------------GPLDPPAGTPLRARNALLPFGAVMGVAFGGMISQGLGAI 170          
BLAST of mRNA_P-wetherbeei_contig15870.1.1 vs. uniprot
Match: A0A5D6Y930_9STRA (Na_H_antiporter domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y930_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.900e-24
Identity = 69/175 (39.43%), Postives = 97/175 (55.43%), Query Frame = 1
Query:   13 VSGEKFAWLVHIMAVSLASLSPVSSWAGLQIGYTQAVLDGLAQQDPGGDGXXXXXRDGFVTVLATLPYRFFPLLYLGLLLAVVLSGRDLGPMGASEEAATATNGGATASTKMASGAAAEAAETVGTAQQPAPALGPLDPRPDTPLRAYNALVPFSVVVAVTVGGMLLDGRSKLLA 537
            VS EKFA ++H++ V L S++PVSSW G++IGY  A L  L Q D           D FVT L+ L YRFFP+L++  +   ++  +D GPM   E+ A A+       T +           +G    P P LGPL+P    PLR  NA+VPF  ++A+T GGM+ DG ++L A
Sbjct:  281 VSREKFAAIIHVIGVCLPSMAPVSSWIGVEIGYVSAQLRDL-QLD----------WDPFVTCLSCLHYRFFPILFIAFIFITIICEKDFGPMVQYEKDAAASPIQTGYMTPV----------DLGPCASPTPELGPLEPDTRKPLRWQNAVVPFVAIIALTFGGMIFDGYTRLYA 434          
BLAST of mRNA_P-wetherbeei_contig15870.1.1 vs. uniprot
Match: A0A2D4CF21_PYTIN (Na_H_antiporter domain-containing protein (Fragment) n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CF21_PYTIN)

HSP 1 Score: 102 bits (255), Expect = 4.110e-22
Identity = 66/177 (37.29%), Postives = 96/177 (54.24%), Query Frame = 1
Query:   13 VSGEKFAWLVHIMAVSLASLSPVSSWAGLQIGYTQAVLDGLAQQDPGGDGXXXXXRDGFVTVLATLPYRFFPLLYLGLLLAVVLSGRDLGPMGASE-EAATA---TNGGATASTKMASGAAAEAAETVGTAQQPAPALGPLDPRPDTPLRAYNALVPFSVVVAVTVGGMLLDGRSKL 531
            VS EKFA ++H + V L S++PVSSW G++IGY  A +  L               D F+T L+ L YRFFP+L++GL+   +++ +D GPM   E +AAT+   T GG      +            G    P P LGPL+P    PLR  NA++PF  ++ +T  GM+ DG ++L
Sbjct:  780 VSREKFAAIIHTIGVCLPSMAPVSSWIGVEIGYVAAQIRDLKLD-----------WDPFLTCLSCLHYRFFPILFIGLIFITIITEKDFGPMVQFEKDAATSPLNTEGGPYTPLDL------------GPCASPEPELGPLEPDTQKPLRWQNAVIPFVSIILLTFFGMIYDGYTRL 933          
BLAST of mRNA_P-wetherbeei_contig15870.1.1 vs. uniprot
Match: F0XXP7_AURAN (Na_H_antiporter domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XXP7_AURAN)

HSP 1 Score: 102 bits (253), Expect = 4.610e-22
Identity = 76/181 (41.99%), Postives = 90/181 (49.72%), Query Frame = 1
Query:    7 LKVSGEKFAWLVHIMAVSLASLSPVSSWAGLQIGYTQAVLDGLAQQDPGGDGXXXXXRDGFVTVLATLPYRFFPLLYLGLLLAVVLSGRDLGPMGASEEAATATNGGATASTKMASGAAAEAAETVGTAQQPAPALGP----LDPRPDTPLRAYNALVPFSVVVAVTVGGMLLDGRSKLLA 537
            L+V  EKFA L+H +AVS+++ SPVSSW G Q+G   A     A   PG           FV  + TLPYR FPL  L  + A V S RD GPM      A A N               EAA   G               L+P P TPLRA NALVPF  +VA T+GGM+LDGR+ L A
Sbjct:  139 LRVCREKFAALLHFVAVSVSASSPVSSWIGQQVGMVSAAT---AAVPPGA------IPSAFVLTVRTLPYRLFPLALLAFVAANVASDRDFGPM----RDAVARN---------------EAAPAPGXXXXXXXXXXXXXXXLEPAPGTPLRALNALVPFGTIVAATLGGMVLDGRAALRA 291          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15870.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5A8_ECTSI1.000e-3347.13Na_H_antiporter domain-containing protein n=2 Tax=... [more]
A0A7S0LMT7_9EUKA1.220e-3244.32Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A7S0P500_9EUKA7.320e-3141.06Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S3RS55_9SPIT3.750e-2844.59Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A8J5X8U4_DIALT1.030e-2540.68Na_H_antiporter domain-containing protein n=2 Tax=... [more]
A0A8J2WUT3_9STRA1.250e-2541.81Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S0HB77_9EUKA8.090e-2539.43Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A5D6Y930_9STRA1.900e-2439.43Na_H_antiporter domain-containing protein n=1 Tax=... [more]
A0A2D4CF21_PYTIN4.110e-2237.29Na_H_antiporter domain-containing protein (Fragmen... [more]
F0XXP7_AURAN4.610e-2241.99Na_H_antiporter domain-containing protein (Fragmen... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15870contigP-wetherbeei_contig15870:756..1292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G5A8
PFAMsNa_H_antiporter
Model size537
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.64e-34
EggNOG OGsCOG1757@1|root,2QWQB@2759|Eukaryota
DescriptionNa /H antiporter family
Cds size537
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186069.944843-CDS-P-wetherbeei_contig15870:755..12921683186069.944843-CDS-P-wetherbeei_contig15870:755..1292Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15870 756..1292 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15870.1.1prot_P-wetherbeei_contig15870.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15870 756..1292 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15870.1.1

>prot_P-wetherbeei_contig15870.1.1 ID=prot_P-wetherbeei_contig15870.1.1|Name=mRNA_P-wetherbeei_contig15870.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=179bp
AGLKVSGEKFAWLVHIMAVSLASLSPVSSWAGLQIGYTQAVLDGLAQQDP
GGDGGGGGGRDGFVTVLATLPYRFFPLLYLGLLLAVVLSGRDLGPMGASE
EAATATNGGATASTKMASGAAAEAAETVGTAQQPAPALGPLDPRPDTPLR
AYNALVPFSVVVAVTVGGMLLDGRSKLLA
back to top

mRNA from alignment at P-wetherbeei_contig15870:756..1292-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15870.1.1 ID=mRNA_P-wetherbeei_contig15870.1.1|Name=mRNA_P-wetherbeei_contig15870.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=537bp|location=Sequence derived from alignment at P-wetherbeei_contig15870:756..1292- (Phaeothamnion wetherbeei SAG_119_79)
GCCGGGCTCAAGGTCAGTGGAGAGAAGTTTGCGTGGCTGGTGCACATCAT GGCGGTGTCGCTGGCCTCGCTCTCGCCGGTGTCCTCGTGGGCGGGTCTCC AAATTGGCTACACTCAAGCCGTGCTTGATGGGCTGGCGCAGCAAGATCCC GGCGGCGACGGCGGCGGCGGCGGCGGCCGCGATGGCTTTGTCACGGTGCT GGCGACACTGCCCTACCGCTTCTTCCCGCTTCTCTACTTGGGCCTGTTGC TGGCTGTGGTGCTGAGTGGGAGGGACCTCGGGCCCATGGGCGCCTCCGAA GAGGCGGCCACGGCAACCAACGGCGGAGCGACAGCGTCGACGAAGATGGC GTCGGGCGCAGCTGCGGAGGCGGCGGAAACGGTGGGGACGGCGCAGCAGC CGGCTCCTGCGCTCGGGCCACTGGACCCGCGGCCCGACACGCCACTGCGA GCCTACAACGCGCTCGTGCCCTTCTCAGTGGTGGTGGCCGTGACGGTCGG CGGCATGCTGCTGGACGGCCGCAGCAAGCTGCTCGCT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig15870:756..1292-

>mRNA_P-wetherbeei_contig15870.1.1 ID=mRNA_P-wetherbeei_contig15870.1.1|Name=mRNA_P-wetherbeei_contig15870.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=537bp|location=Sequence derived from alignment at P-wetherbeei_contig15870:756..1292- (Phaeothamnion wetherbeei SAG_119_79)
GCCGGGCTCAAGGTCAGTGGAGAGAAGTTTGCGTGGCTGGTGCACATCAT
GGCGGTGTCGCTGGCCTCGCTCTCGCCGGTGTCCTCGTGGGCGGGTCTCC
AAATTGGCTACACTCAAGCCGTGCTTGATGGGCTGGCGCAGCAAGATCCC
GGCGGCGACGGCGGCGGCGGCGGCGGCCGCGATGGCTTTGTCACGGTGCT
GGCGACACTGCCCTACCGCTTCTTCCCGCTTCTCTACTTGGGCCTGTTGC
TGGCTGTGGTGCTGAGTGGGAGGGACCTCGGGCCCATGGGCGCCTCCGAA
GAGGCGGCCACGGCAACCAACGGCGGAGCGACAGCGTCGACGAAGATGGC
GTCGGGCGCAGCTGCGGAGGCGGCGGAAACGGTGGGGACGGCGCAGCAGC
CGGCTCCTGCGCTCGGGCCACTGGACCCGCGGCCCGACACGCCACTGCGA
GCCTACAACGCGCTCGTGCCCTTCTCAGTGGTGGTGGCCGTGACGGTCGG
CGGCATGCTGCTGGACGGCCGCAGCAAGCTGCTCGCT
back to top