mRNA_P-wetherbeei_contig15851.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15851.1.1
Unique NamemRNA_P-wetherbeei_contig15851.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15851.1.1 vs. uniprot
Match: UPI001E676B15 (26S proteasome non-ATPase regulatory subunit 5-like n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E676B15)

HSP 1 Score: 58.9 bits (141), Expect = 2.870e-6
Identity = 32/99 (32.32%), Postives = 58/99 (58.59%), Query Frame = 1 
Query:  481 EYLLALARRPVPEVRFGAFDVMRCALHQRGGWGLRALFLQTAGYPEFLENRQTEHERPGREWKFSVIEAAVRCPE-KAVIGAATLERLETMLRQGPFYV 774
            E L+A+AR+P  ++   A  ++    +    WG R +  +  G  E++ +R+TE E+PG+E K++++E  V+ P   ++     +E+LE   RQGPF+V
Sbjct:  404 EKLVAIARQPFTDIHCPALGLINALANMP--WGQRFI-CREPGLIEYILDRKTESEKPGKEAKWTIVETLVKSPSASSIFTEYHMEQLEKFYRQGPFFV 499
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15851.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001E676B152.870e-632.3226S proteasome non-ATPase regulatory subunit 5-lik... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15851contigP-wetherbeei_contig15851:14..1134 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog65071.PYU1_T005254
PFAMsProteasom_PSMB
Model size810
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.22e-27
EggNOG OGsKOG4413@1|root,KOG4413@2759|Eukaryota,1MFZC@121069|Pythiales
Ec32 ortholog descriptionArmadillo-like helical
Ec32 orthologEc-16_003720.1
DescriptionProteasome 26S non-ATPase subunit 5. Source PGD
Cds size810
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186069.446344-CDS-P-wetherbeei_contig15851:13..3441683186069.446344-CDS-P-wetherbeei_contig15851:13..344Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15851 14..344 +
1683186069.4572208-CDS-P-wetherbeei_contig15851:425..4811683186069.4572208-CDS-P-wetherbeei_contig15851:425..481Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15851 426..481 +
1683186069.4646168-CDS-P-wetherbeei_contig15851:711..11341683186069.4646168-CDS-P-wetherbeei_contig15851:711..1134Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15851 712..1134 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15851.1.1prot_P-wetherbeei_contig15851.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15851 14..1134 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15851.1.1

>prot_P-wetherbeei_contig15851.1.1 ID=prot_P-wetherbeei_contig15851.1.1|Name=mRNA_P-wetherbeei_contig15851.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=270bp
GGGGSGGDLLQGSALRVLGAIYKRAGALPASAWAEVEPGLARAFLRLVVA
HAGSREETTQLAALSAIAAFAGSSVSALAAAVGDDELLDAWLTFDNFKVE
VKAAALHSIALAAGGGIEGGDGAGDGAEDMAGVCSLLLTAPLFHPKSLQV
GPRNGGRPTSEYLLALARRPVPEVRFGAFDVMRCALHQRGGWGLRALFLQ
TAGYPEFLENRQTEHERPGREWKFSVIEAAVRCPEKAVIGAATLERLETM
LRQGPFYVGQPPPDVRTMA*
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mRNA from alignment at P-wetherbeei_contig15851:14..1134+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15851.1.1 ID=mRNA_P-wetherbeei_contig15851.1.1|Name=mRNA_P-wetherbeei_contig15851.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1121bp|location=Sequence derived from alignment at P-wetherbeei_contig15851:14..1134+ (Phaeothamnion wetherbeei SAG_119_79)
GGGGGGGGGGGCAGTGGCGGCGACCTCCTGCAGGGCTCGGCGCTGCGGGT
GCTGGGCGCCATCTACAAGCGGGCGGGGGCGCTGCCGGCGTCGGCGTGGG
CGGAGGTGGAGCCGGGGCTCGCCCGCGCGTTCTTGCGGCTGGTCGTGGCA
CACGCCGGCTCGCGGGAAGAGACGACGCAGCTGGCGGCGCTGTCCGCTAT
CGCTGCCTTTGCCGGCAGCTCGGTGTCGGCGCTGGCGGCGGCGGTCGGCG
ACGACGAGCTTCTCGACGCGTGGCTGACGTTTGATAACTTCAAAGTTGAA
GTCAAGGCCGCCGCGCTGCACAGCATCGCGCGTGTTTTGGGCCCTCCTCC
GCCGCTGCTGCCGCTGACGGCGACGGTGATTTCGACAGCACAGCCGCTGC
CTGGGAGGCAAGTGGCGGCCGGTGGTGGGATCGAAGGAGGTGACGGCGCT
GGCGATGGTGCCGAAGACGTGAACGCGGCGGAGGAGCGCTCCGCTTTGTG
CCGGCGTCTGTATGAGCAGGTGAGGAAGCATCTACTTTTCAAATGGATGA
ATGTCTCTTATGCCATGTATTTGCCTGGAGAACCTTTTTTGCGGGAGCGA
TGCAGGCGTTTGACCCGTCTTTGGCTGTGCGCCAGTGACTTCTCTCGTTC
TTAGCTTTCACGCGGAAAGAGGAAATATTTGTTCCTGGGATCGCCCAGAT
GGCAGGTGTTTGCTCCCTTCTCCTAACCGCGCCGCTGTTCCATCCTAAAT
CGTTACAGGTGGGGCCTCGCAACGGCGGGCGGCCCACGAGTGAGTACCTG
CTGGCGCTGGCGCGGCGGCCCGTGCCCGAGGTGCGCTTCGGCGCCTTCGA
CGTCATGCGTTGCGCCCTCCACCAGCGGGGCGGTTGGGGCCTGCGGGCGC
TCTTCCTGCAGACGGCCGGCTACCCGGAGTTCCTCGAGAACCGCCAGACG
GAGCACGAGCGGCCTGGCCGCGAATGGAAGTTCTCCGTCATTGAGGCGGC
CGTCCGCTGCCCGGAGAAGGCCGTCATCGGCGCGGCGACGCTGGAGCGTT
TGGAGACGATGCTGCGGCAGGGGCCGTTCTACGTCGGTCAGCCGCCGCCC
GACGTTCGGACAATGGCTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15851:14..1134+

>mRNA_P-wetherbeei_contig15851.1.1 ID=mRNA_P-wetherbeei_contig15851.1.1|Name=mRNA_P-wetherbeei_contig15851.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=810bp|location=Sequence derived from alignment at P-wetherbeei_contig15851:14..1134+ (Phaeothamnion wetherbeei SAG_119_79)
GGGGGGGGGGGCAGTGGCGGCGACCTCCTGCAGGGCTCGGCGCTGCGGGT
GCTGGGCGCCATCTACAAGCGGGCGGGGGCGCTGCCGGCGTCGGCGTGGG
CGGAGGTGGAGCCGGGGCTCGCCCGCGCGTTCTTGCGGCTGGTCGTGGCA
CACGCCGGCTCGCGGGAAGAGACGACGCAGCTGGCGGCGCTGTCCGCTAT
CGCTGCCTTTGCCGGCAGCTCGGTGTCGGCGCTGGCGGCGGCGGTCGGCG
ACGACGAGCTTCTCGACGCGTGGCTGACGTTTGATAACTTCAAAGTTGAA
GTCAAGGCCGCCGCGCTGCACAGCATCGCGCTGGCGGCCGGTGGTGGGAT
CGAAGGAGGTGACGGCGCTGGCGATGGTGCCGAAGACATGGCAGGTGTTT
GCTCCCTTCTCCTAACCGCGCCGCTGTTCCATCCTAAATCGTTACAGGTG
GGGCCTCGCAACGGCGGGCGGCCCACGAGTGAGTACCTGCTGGCGCTGGC
GCGGCGGCCCGTGCCCGAGGTGCGCTTCGGCGCCTTCGACGTCATGCGTT
GCGCCCTCCACCAGCGGGGCGGTTGGGGCCTGCGGGCGCTCTTCCTGCAG
ACGGCCGGCTACCCGGAGTTCCTCGAGAACCGCCAGACGGAGCACGAGCG
GCCTGGCCGCGAATGGAAGTTCTCCGTCATTGAGGCGGCCGTCCGCTGCC
CGGAGAAGGCCGTCATCGGCGCGGCGACGCTGGAGCGTTTGGAGACGATG
CTGCGGCAGGGGCCGTTCTACGTCGGTCAGCCGCCGCCCGACGTTCGGAC
AATGGCTTGA
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