mRNA_P-wetherbeei_contig15831.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15831.1.1
Unique NamemRNA_P-wetherbeei_contig15831.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15831.1.1 vs. uniprot
Match: A0A6H5JUH3_9PHAE (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUH3_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 1.250e-55
Identity = 153/344 (44.48%), Postives = 192/344 (55.81%), Query Frame = 1 
Query:    1 VYGEMLEVCVRKAGDALLDEVRRQCQ---RP---RGDTDAEAEGEAEQALAE-----ACHMAALLGKARQAANIYGGHLRARLRIEMESAMKRLASQRALHRLNMAAGGAGLAKXXXXXXXXXXXED-------SDAQPHVTALAAVLGAASKCMAKLARAGLDPDATAAPAALLHGDCLAQAAKVLDWFDNDSTLSRWQEQAS---AIAHGGKLEDIDGDGVGGAGEGKSGV----------------DVQGMDFIVDELAFISQLCQRYLDFSSEDMGVQTDSGSDFLARSQRLEGVYVQLEDAYCLASVAEAVRIAEPIEVADGICVSSMVEDGGFLLQVS 921
            VY EML+ C RKAG+  LD +R+ CQ   RP   R D      G+   AL E       + AALLGKA  AANIYGG LR RL+   ++A+K+L+S R L+RL++A+G      XXXXXXXXXXX         +D  PH+TALA VLG  SK M +LA + L        A LLH D   QA K+L+WF +D+ L +WQ Q S   A+                                        D +GMDF++DE+A   Q C RYLDF ++D+G+  D  S+F A+ +  EG YVQLEDAYCL SV EA+RIAEPIEV DG  VSSMVED  FL+  S
Sbjct:  109 VYDEMLQDCRRKAGEVTLDRLRKLCQKLSRPDANRHDDGGRMGGDGGTALGEEETVVVSYHAALLGKAEGAANIYGGFLRNRLKQANDAAVKKLSSLRPLYRLSLASGXXXXXXXXXXXXXXXXXXXXXXXXXXADPHPHITALATVLGEGSKLMVRLAESSLGDGVMEPVAELLHKDSKTQAVKILEWFQHDADLPKWQAQVSGRTAVERAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGLFDARGMDFVIDEMALACQYCHRYLDFVADDLGLPEDQSSEFYAQVRLTEGAYVQLEDAYCLRSVEEAMRIAEPIEVQDGTYVSSMVEDASFLVHKS 452
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BLAST of mRNA_P-wetherbeei_contig15831.1.1 vs. uniprot
Match: D8LT95_ECTSI (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT95_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 4.170e-20
Identity = 50/84 (59.52%), Postives = 61/84 (72.62%), Query Frame = 1 
Query:  670 LAFISQLCQRYLDFSSEDMGVQTDSGSDFLARSQRLEGVYVQLEDAYCLASVAEAVRIAEPIEVADGICVSSMVEDGGFLLQVS 921
            +A   Q C RYLDF ++D+G+  D  S+F A+ + +EG YVQLEDAYCL SV EA+RIAEPIEV DG  VSSMVED  FL+  S
Sbjct:    1 MALACQYCHRYLDFVADDLGLPEDQSSEFYAQVRLIEGAYVQLEDAYCLRSVEEAMRIAEPIEVQDGTYVSSMVEDASFLVHKS 84
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15831.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JUH3_9PHAE1.250e-5544.48Conserved oligomeric Golgi complex subunit 4 n=1 T... [more]
D8LT95_ECTSI4.170e-2059.52Conserved oligomeric Golgi complex subunit 4 n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15831contigP-wetherbeei_contig15831:392..1567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LT95
Model size921
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.31e-21
EggNOG OGs2BXNC@1|root,2SDKR@2759|Eukaryota
Cds size909
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186068.7409527-UTR-P-wetherbeei_contig15831:391..4031683186068.7409527-UTR-P-wetherbeei_contig15831:391..403Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15831 392..403 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186068.7561712-CDS-P-wetherbeei_contig15831:403..10871683186068.7561712-CDS-P-wetherbeei_contig15831:403..1087Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15831 404..1087 +
1683186068.7683132-CDS-P-wetherbeei_contig15831:1342..15671683186068.7683132-CDS-P-wetherbeei_contig15831:1342..1567Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15831 1343..1567 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15831.1.1prot_P-wetherbeei_contig15831.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15831 404..1567 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15831.1.1

>prot_P-wetherbeei_contig15831.1.1 ID=prot_P-wetherbeei_contig15831.1.1|Name=mRNA_P-wetherbeei_contig15831.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=303bp
MLEVCVRKAGDALLDEVRRQCQRPRGDTDAEAEGEAEQALAEACHMAALL
GKARQAANIYGGHLRARLRIEMESAMKRLASQRALHRLNMAAGGAGLAKA
AAAAGRGGGGEDSDAQPHVTALAAVLGAASKCMAKLARAGLDPDATAAPA
ALLHGDCLAQAAKVLDWFDNDSTLSRWQEQASAIAHGGKLEDIDGDGVGG
AGEGKSGVDVQGMDFIVDELAFISQLCQRYLDFSSEDMGVQTDSGSDFLA
RSQRLEGVYVQLEDAYCLASVAEAVRIAEPIEVADGICVSSMVEDGGFLL
QVS
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mRNA from alignment at P-wetherbeei_contig15831:392..1567+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15831.1.1 ID=mRNA_P-wetherbeei_contig15831.1.1|Name=mRNA_P-wetherbeei_contig15831.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1176bp|location=Sequence derived from alignment at P-wetherbeei_contig15831:392..1567+ (Phaeothamnion wetherbeei SAG_119_79)
GTGTACGGAGAAATGCTGGAAGTCTGCGTTCGCAAAGCCGGCGATGCGTT
GCTGGATGAGGTCCGGCGGCAATGCCAGAGGCCTCGGGGCGACACAGATG
CGGAAGCGGAAGGTGAGGCCGAGCAGGCGTTGGCAGAAGCTTGCCACATG
GCTGCATTATTGGGCAAGGCTCGGCAGGCCGCGAATATCTACGGGGGTCA
TTTGAGGGCCCGCCTACGAATCGAAATGGAGTCAGCCATGAAGCGTCTGG
CATCCCAGCGGGCGCTCCACCGCCTCAACATGGCCGCTGGAGGTGCTGGC
CTCGCCAAGGCCGCCGCCGCCGCCGGCCGTGGCGGCGGCGGCGAAGATTC
CGACGCCCAGCCGCACGTCACAGCACTGGCGGCGGTCCTCGGCGCGGCGT
CCAAATGCATGGCAAAGCTGGCGCGGGCTGGCCTCGATCCAGATGCGACG
GCGGCGCCTGCGGCGCTGCTGCATGGCGACTGCCTGGCGCAGGCCGCGAA
AGTGCTCGACTGGTTTGATAACGACAGCACCTTGAGCCGGTGGCAAGAGC
AAGCCTCGGCCATTGCGCACGGCGGGAAGCTCGAGGATATCGACGGGGAC
GGCGTCGGCGGCGCTGGCGAGGGCAAGTCTGGTGTCGACGTGCAAGGCAT
GGATTTCATTGTGGATGAGCTGGCCTTCATCAGCCAGCTATGTCAGGTCA
GCCGTTGTTGCGTTACGCTTTGCAGTGTGCGTCGCTGCATCTTGACATCA
GGAAAGCGTGAACGGATTTTGCCGTGTAACGACGCTTTCGCGAACGTTGC
TTCTCTCGTTTGCCGCTGAAACCGATTTTGTCCTGGCCATGGCGGTCCGT
CATCGTGTCACCTATGCCACGGCGGTGCAAATATGCCGATTCTTCTTTAT
CCGGGCAACTTACCAAGCCGCCTGCCTCGCCCCGACGCTTCCCGGCTGCA
GCGATATCTGGACTTTAGCAGCGAGGATATGGGAGTGCAGACCGACAGCG
GCAGCGACTTCTTGGCGCGGTCGCAGCGGCTTGAGGGGGTGTACGTCCAG
CTGGAGGACGCTTATTGTCTGGCGAGCGTGGCGGAAGCCGTTCGCATCGC
CGAGCCCATCGAGGTGGCCGACGGCATCTGCGTCAGCTCGATGGTCGAGG
ACGGCGGCTTTCTTCTCCAGGTCAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15831:392..1567+

>mRNA_P-wetherbeei_contig15831.1.1 ID=mRNA_P-wetherbeei_contig15831.1.1|Name=mRNA_P-wetherbeei_contig15831.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=909bp|location=Sequence derived from alignment at P-wetherbeei_contig15831:392..1567+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGGAAGTCTGCGTTCGCAAAGCCGGCGATGCGTTGCTGGATGAGGT
CCGGCGGCAATGCCAGAGGCCTCGGGGCGACACAGATGCGGAAGCGGAAG
GTGAGGCCGAGCAGGCGTTGGCAGAAGCTTGCCACATGGCTGCATTATTG
GGCAAGGCTCGGCAGGCCGCGAATATCTACGGGGGTCATTTGAGGGCCCG
CCTACGAATCGAAATGGAGTCAGCCATGAAGCGTCTGGCATCCCAGCGGG
CGCTCCACCGCCTCAACATGGCCGCTGGAGGTGCTGGCCTCGCCAAGGCC
GCCGCCGCCGCCGGCCGTGGCGGCGGCGGCGAAGATTCCGACGCCCAGCC
GCACGTCACAGCACTGGCGGCGGTCCTCGGCGCGGCGTCCAAATGCATGG
CAAAGCTGGCGCGGGCTGGCCTCGATCCAGATGCGACGGCGGCGCCTGCG
GCGCTGCTGCATGGCGACTGCCTGGCGCAGGCCGCGAAAGTGCTCGACTG
GTTTGATAACGACAGCACCTTGAGCCGGTGGCAAGAGCAAGCCTCGGCCA
TTGCGCACGGCGGGAAGCTCGAGGATATCGACGGGGACGGCGTCGGCGGC
GCTGGCGAGGGCAAGTCTGGTGTCGACGTGCAAGGCATGGATTTCATTGT
GGATGAGCTGGCCTTCATCAGCCAGCTATGTCAGCGATATCTGGACTTTA
GCAGCGAGGATATGGGAGTGCAGACCGACAGCGGCAGCGACTTCTTGGCG
CGGTCGCAGCGGCTTGAGGGGGTGTACGTCCAGCTGGAGGACGCTTATTG
TCTGGCGAGCGTGGCGGAAGCCGTTCGCATCGCCGAGCCCATCGAGGTGG
CCGACGGCATCTGCGTCAGCTCGATGGTCGAGGACGGCGGCTTTCTTCTC
CAGGTCAGC
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