mRNA_P-wetherbeei_contig15685.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15685.1.1
Unique NamemRNA_P-wetherbeei_contig15685.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15685.1.1 vs. uniprot
Match: F0YGJ4_AURAN (RING-type domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGJ4_AURAN)

HSP 1 Score: 53.5 bits (127), Expect = 5.510e-8
Identity = 21/46 (45.65%), Postives = 28/46 (60.87%), Query Frame = 1 
Query:   79 CVCCMGRPRSVVLLPCRHFECCQICGSSLVKCPTCNAIIADKMNMF 216
            CVCC+ RPR++VLL C H   C+ C   L +CP C A +A    +F
Sbjct:    5 CVCCLDRPRNMVLLDCMHVVACEACAPRLRECPMCRAPVAQTRRIF 50
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BLAST of mRNA_P-wetherbeei_contig15685.1.1 vs. uniprot
Match: D3BG62_POLPP (RING-type domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BG62_POLPP)

HSP 1 Score: 49.3 bits (116), Expect = 1.480e-5
Identity = 16/35 (45.71%), Postives = 23/35 (65.71%), Query Frame = 1 
Query:   79 CVCCMGRPRSVVLLPCRHFECCQICGSSLVKCPTC 183
            C+ C  R R+ +  PC H+ CC  C ++L+KCPTC
Sbjct:   91 CIVCQERSRNTLFSPCLHYNCCNTCANTLIKCPTC 125
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BLAST of mRNA_P-wetherbeei_contig15685.1.1 vs. uniprot
Match: UPI0006B10C4F (RING finger protein unkempt homolog isoform X1 n=2 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B10C4F)

HSP 1 Score: 50.4 bits (119), Expect = 2.140e-5
Identity = 21/53 (39.62%), Postives = 30/53 (56.60%), Query Frame = 1 
Query:   55 VIERAAVDCVCCMGRPRSVVLLPCRHFECCQICGSSLVKCPTCNAIIADKMNM 213
            +  ++A  C+ C  + RSV LLPC H+  C  C    +KCP C A IA + +M
Sbjct:  770 IYHKSATKCMVCENQNRSVALLPCNHYVLCNQCALHQLKCPYCQADIAQRSSM 822
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BLAST of mRNA_P-wetherbeei_contig15685.1.1 vs. uniprot
Match: A0A139AJS3_GONPJ (RING-type domain-containing protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AJS3_GONPJ)

HSP 1 Score: 49.7 bits (117), Expect = 3.940e-5
Identity = 27/79 (34.18%), Postives = 38/79 (48.10%), Query Frame = 1 
Query:    7 DANSVRQEPATPAR-------GEVIERA--AVDCVCCMGRPRSVVLLPCRHFECCQICGSSLVKCPTCNAIIADKMNMF 216
            D   VR +P   A        GE +E    A DCV C+ +  S++LL C H+  C+ C   L +CP C   IA ++  F
Sbjct:  469 DGGGVRGQPGGSAEVAQSAGEGEDLENVEEAEDCVVCLSKKPSIILLNCGHYCLCESCSGELDRCPVCRQPIARRIRTF 547
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BLAST of mRNA_P-wetherbeei_contig15685.1.1 vs. uniprot
Match: A0A7S3UWY5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWY5_HETAK)

HSP 1 Score: 47.8 bits (112), Expect = 5.050e-5
Identity = 20/46 (43.48%), Postives = 29/46 (63.04%), Query Frame = 1 
Query:   79 CVCCMGRPRSVVLLPCRHFECCQICGS---SLVKCPTCNAIIADKM 207
            C  C+ +P++V+LLPC+H   C  CGS   +   CP CN+ I DK+
Sbjct:   76 CCVCLDKPKTVLLLPCKHLCLCADCGSPEKAFSLCPLCNSTIEDKL 121
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BLAST of mRNA_P-wetherbeei_contig15685.1.1 vs. uniprot
Match: A0A813G0G0_POLGL (RING-type E3 ubiquitin transferase (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813G0G0_POLGL)

HSP 1 Score: 48.5 bits (114), Expect = 7.700e-5
Identity = 21/53 (39.62%), Postives = 29/53 (54.72%), Query Frame = 1 
Query:   61 ERAAVDCVCCMGRPRSVVLLPCRHFECCQICGSSL--VKCPTCNAIIADKMNM 213
            +   +DC+ C  RP+SV+LLPCRH   C  C  SL   KCP C +     + +
Sbjct:  148 DETEIDCMICYSRPKSVLLLPCRHCSVCHSCLRSLRDEKCPLCRSSFTSYLTL 200
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15685.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
F0YGJ4_AURAN5.510e-845.65RING-type domain-containing protein (Fragment) n=1... [more]
D3BG62_POLPP1.480e-545.71RING-type domain-containing protein n=1 Tax=Polysp... [more]
UPI0006B10C4F2.140e-539.62RING finger protein unkempt homolog isoform X1 n=2... [more]
A0A139AJS3_GONPJ3.940e-534.18RING-type domain-containing protein n=1 Tax=Gonapo... [more]
A0A7S3UWY5_HETAK5.050e-543.48Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A813G0G0_POLGL7.700e-539.62RING-type E3 ubiquitin transferase (Fragment) n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15685contigP-wetherbeei_contig15685:1129..1353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog7719.XP_002127973.1
PFAMsBIR,MORN,UCH,USP7_ICP0_bdg,zf-C3HC4_3
Model size225
Max annot lvl2759|Eukaryota
KEGG koko:K04725,ko:K16060,ko:K16061
KEGG Pathwayko01524,ko04064,ko04120,ko04210,ko04214,ko04215,ko04217,ko04510,ko04621,ko04624,ko04668,ko05145,ko05166,ko05200,ko05222,map01524,map04064,map04120,map04210,map04214,map04215,map04217,map04510,map04621,map04624,map04668,map05145,map05166,map05200,map05222
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.89e-08
EggNOG OGsKOG1101@1|root,KOG1101@2759|Eukaryota
EC2.3.2.27
Descriptioninhibition of cysteine-type endopeptidase activity involved in apoptotic process
Cds size225
COG categoryK
BRITEko00000,ko00001,ko01000,ko03029,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186064.0543637-CDS-P-wetherbeei_contig15685:1128..13531683186064.0543637-CDS-P-wetherbeei_contig15685:1128..1353Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15685 1129..1353 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15685.1.1prot_P-wetherbeei_contig15685.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15685 1129..1353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15685.1.1

>prot_P-wetherbeei_contig15685.1.1 ID=prot_P-wetherbeei_contig15685.1.1|Name=mRNA_P-wetherbeei_contig15685.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=75bp
VRDANSVRQEPATPARGEVIERAAVDCVCCMGRPRSVVLLPCRHFECCQI
CGSSLVKCPTCNAIIADKMNMFIS*
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mRNA from alignment at P-wetherbeei_contig15685:1129..1353+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15685.1.1 ID=mRNA_P-wetherbeei_contig15685.1.1|Name=mRNA_P-wetherbeei_contig15685.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=225bp|location=Sequence derived from alignment at P-wetherbeei_contig15685:1129..1353+ (Phaeothamnion wetherbeei SAG_119_79)
GTTCGCGATGCCAACAGCGTGCGGCAAGAGCCGGCAACTCCTGCGCGCGG
GGAGGTTATCGAGAGAGCCGCGGTGGATTGCGTTTGCTGCATGGGAAGGC
CGCGTTCGGTGGTTCTGCTCCCGTGTCGTCATTTTGAGTGCTGCCAAATA
TGTGGATCCTCCCTGGTGAAATGTCCCACATGCAACGCTATCATTGCGGA
CAAAATGAACATGTTCATCAGTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15685:1129..1353+

>mRNA_P-wetherbeei_contig15685.1.1 ID=mRNA_P-wetherbeei_contig15685.1.1|Name=mRNA_P-wetherbeei_contig15685.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=225bp|location=Sequence derived from alignment at P-wetherbeei_contig15685:1129..1353+ (Phaeothamnion wetherbeei SAG_119_79)
GTTCGCGATGCCAACAGCGTGCGGCAAGAGCCGGCAACTCCTGCGCGCGG
GGAGGTTATCGAGAGAGCCGCGGTGGATTGCGTTTGCTGCATGGGAAGGC
CGCGTTCGGTGGTTCTGCTCCCGTGTCGTCATTTTGAGTGCTGCCAAATA
TGTGGATCCTCCCTGGTGAAATGTCCCACATGCAACGCTATCATTGCGGA
CAAAATGAACATGTTCATCAGTTGA
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