mRNA_P-wetherbeei_contig15626.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15626.1.1
Unique NamemRNA_P-wetherbeei_contig15626.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15626.1.1 vs. uniprot
Match: D8LTL8_ECTSI (TRUD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTL8_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 8.400e-29
Identity = 69/130 (53.08%), Postives = 90/130 (69.23%), Query Frame = 1
Query:  103 FLSFALRKEGREHFDVLGALARALRVPTGALTAAGIKDKRAVTTQRVVLRGGIPARQLLATNGTIGGVRVGSIGPAAGPLAAGDLRGNIFRVVLRGATPAEPGALVTAALEALSRSGFVNFYGTQRVGSP 492
            ++ F LRKEGREH     AL++ALRVP  AL+  GIKDKRA+TTQ  +++G +P R++L  NG+I GV VG++   A  L  G+L GN F VV+RG     PGA V ++LE    +GF+NFYGTQRVGSP
Sbjct:  366 WVRFGLRKEGREHHVTALALSKALRVPLSALSFGGIKDKRAITTQACIVKG-VPPRKILEINGSIPGVTVGNLSYCARGLNLGELSGNKFSVVVRGVMV--PGAAVKSSLEEACSNGFINFYGTQRVGSP 492          
BLAST of mRNA_P-wetherbeei_contig15626.1.1 vs. uniprot
Match: A0A2H1CFM5_FASHE (TRUD domain-containing protein n=1 Tax=Fasciola hepatica TaxID=6192 RepID=A0A2H1CFM5_FASHE)

HSP 1 Score: 92.8 bits (229), Expect = 9.020e-20
Identity = 55/131 (41.98%), Postives = 78/131 (59.54%), Query Frame = 1
Query:   94 NSGFLSFALRKEGREHFDVLGALARALRVPTGALTAAGIKDKRAVTTQRVVLRGGIPARQLLATNGTIGGVRVGSIGPAAGPLAAGDLRGNIFRVVLRGATPAEPGALVTAALEALSRSGFVNFYGTQRVG 486
            N  +  F L KEG++    +  L+R L +  G+   AG KD+RA+TTQ V L+G I +R+L A N  + G+R+G+      PL  GDL GN F VVLR    ++  +++  A+EA  R GFVN+YG QR G
Sbjct:  111 NQAYCRFVLYKEGKDTISAIQLLSRFLHIRPGSFAYAGTKDRRAITTQFVTLKG-IDSRRLSALNQKLRGIRLGNFSYVPQPLFLGDLDGNRFTVVLRSVNVSD--SVIREAVEAWQRDGFVNYYGLQRFG 238          
BLAST of mRNA_P-wetherbeei_contig15626.1.1 vs. uniprot
Match: A0A8E0RQ08_9TREM (tRNA pseudouridine synthase D n=1 Tax=Fasciolopsis buski TaxID=27845 RepID=A0A8E0RQ08_9TREM)

HSP 1 Score: 92.8 bits (229), Expect = 6.780e-19
Identity = 55/131 (41.98%), Postives = 77/131 (58.78%), Query Frame = 1
Query:   94 NSGFLSFALRKEGREHFDVLGALARALRVPTGALTAAGIKDKRAVTTQRVVLRGGIPARQLLATNGTIGGVRVGSIGPAAGPLAAGDLRGNIFRVVLRGATPAEPGALVTAALEALSRSGFVNFYGTQRVG 486
            N  +  F L KEG++    +  L+R L +  G+   AG KD+RA+TTQ V L+G I +R+L A N  + G+R+G+      PL  GDL GN F VVLR    ++  ++V   +EA  R GFVN+YG QR G
Sbjct:  179 NQAYCRFVLYKEGKDTISAIQLLSRLLHIRPGSFAYAGTKDRRAITTQFVTLKG-IDSRRLSALNQKLRGIRLGNFSYVPKPLFLGDLDGNRFTVVLRSVEASD--SIVREGIEAWQRDGFVNYYGLQRFG 306          
BLAST of mRNA_P-wetherbeei_contig15626.1.1 vs. uniprot
Match: A0A4E0R8H9_FASHE (Pseudouridylate synthase 7 n=2 Tax=Fasciola TaxID=6191 RepID=A0A4E0R8H9_FASHE)

HSP 1 Score: 92.8 bits (229), Expect = 6.780e-19
Identity = 55/131 (41.98%), Postives = 78/131 (59.54%), Query Frame = 1
Query:   94 NSGFLSFALRKEGREHFDVLGALARALRVPTGALTAAGIKDKRAVTTQRVVLRGGIPARQLLATNGTIGGVRVGSIGPAAGPLAAGDLRGNIFRVVLRGATPAEPGALVTAALEALSRSGFVNFYGTQRVG 486
            N  +  F L KEG++    +  L+R L +  G+   AG KD+RA+TTQ V L+G I +R+L A N  + G+R+G+      PL  GDL GN F VVLR    ++  +++  A+EA  R GFVN+YG QR G
Sbjct:  178 NQAYCRFVLYKEGKDTISAIQLLSRFLHIRPGSFAYAGTKDRRAITTQFVTLKG-IDSRRLSALNQKLRGIRLGNFSYVPQPLFLGDLDGNRFTVVLRSVNVSD--SVIREAVEAWQRDGFVNYYGLQRFG 305          
BLAST of mRNA_P-wetherbeei_contig15626.1.1 vs. uniprot
Match: K3ZR46_SETIT (TRUD domain-containing protein n=4 Tax=Setaria TaxID=4554 RepID=K3ZR46_SETIT)

HSP 1 Score: 91.3 bits (225), Expect = 2.400e-18
Identity = 57/129 (44.19%), Postives = 77/129 (59.69%), Query Frame = 1
Query:  103 FLSFALRKEGREHFDVLGALARALRVPTGALTAAGIKDKRAVTTQRVVLRGGIPARQLLATNGTIGGVRVGSIGPAAGPLAAGDLRGNIFRVVLRGATPAEPGALVTAALEALSRSGFVNFYGTQRVGS 489
            FL F L KE R+  + LG + + L V   +   AG KDKRAVTTQ+V L   + A +L+A N  + G+RVG        LA G LRGN F + LR    AE   ++ AA++ LS++GF+N+YG QR GS
Sbjct:  238 FLRFHLYKENRDTQEALGVIGKMLGVQPRSFGFAGTKDKRAVTTQQVTLFK-VHASRLVALNSKLAGIRVGDFSYVNEGLALGQLRGNRFAITLRNVV-AESDDVIKAAVDGLSKNGFINYYGLQRFGS 364          
BLAST of mRNA_P-wetherbeei_contig15626.1.1 vs. uniprot
Match: A0A067CP05_SAPPC (TRUD domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CP05_SAPPC)

HSP 1 Score: 89.7 bits (221), Expect = 7.930e-18
Identity = 56/132 (42.42%), Postives = 78/132 (59.09%), Query Frame = 1
Query:  103 FLSFALRKEGREHFDVLGALARALRVPTGALTAAGIKDKRAVTTQRVVLRGGIPARQLLATNGTIG--GVRVGSIGPAAGPLAAGDLRGNIFRVVLRGATPAEPGALVTAALEALSRSGFVNFYGTQRVGSP 492
            ++ F L+K   +HF  L ALARA + PT + T AG KDKRAVTTQR+V +   P+  LL  +  +   G+ VG +   A PL  G   GN F + LR     E   +V AA  +++ +GF+N++G QRVGSP
Sbjct:  223 YVQFVLQKVNVDHFSALEALARAAKTPTSSFTYAGTKDKRAVTTQRLVAQSVAPS-VLLDAHAALAPMGLAVGHLAYVAAPLTLGQSGGNQFTIRLRNVE--ESPEVVAAAFASVASTGFINYFGLQRVGSP 351          
BLAST of mRNA_P-wetherbeei_contig15626.1.1 vs. uniprot
Match: A0A183AA80_9TREM (TRUD domain-containing protein n=1 Tax=Echinostoma caproni TaxID=27848 RepID=A0A183AA80_9TREM)

HSP 1 Score: 88.6 bits (218), Expect = 2.020e-17
Identity = 52/131 (39.69%), Postives = 75/131 (57.25%), Query Frame = 1
Query:   94 NSGFLSFALRKEGREHFDVLGALARALRVPTGALTAAGIKDKRAVTTQRVVLRGGIPARQLLATNGTIGGVRVGSIGPAAGPLAAGDLRGNIFRVVLRGATPAEPGALVTAALEALSRSGFVNFYGTQRVG 486
            N  +  F L KEG++    +  L+R L +  G+   AG KD+RA+TTQ V L+G I + +L A N  + G+R+G+      PL  GDL GN F +VLR     +  ++V  A+E   R GF+N+YG QR G
Sbjct:  166 NQAYCRFVLYKEGKDTISAIQLLSRCLHIRPGSFAYAGTKDRRAITTQFVTLKG-IDSHRLSALNRKLRGIRLGNFSYVPRPLFLGDLDGNRFTLVLRSVQALD--SVVQKAIEVWQRDGFINYYGLQRFG 293          
BLAST of mRNA_P-wetherbeei_contig15626.1.1 vs. uniprot
Match: A0A8J5XT50_DIALT (TRUD domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XT50_DIALT)

HSP 1 Score: 87.8 bits (216), Expect = 3.850e-17
Identity = 62/136 (45.59%), Postives = 76/136 (55.88%), Query Frame = 1
Query:  103 FLSFALRKEGREHFDVLGALARALRVPTGALTAAGIKDKRAVTTQRVVL-------RGGIPARQLLATNGTIGGVRVGSIGPAAGPLAAGDLRGNIFRVVLRGATPAEPGALVTAALEALSRSGFVNFYGTQRVGS 489
            ++ F L KE R+  DVL +LARAL       + AGIKD+RAVT QRV          G I  R  L       GVR+G +  AA P+  G+L GN F +VLR A PA+  A V AA  AL   GFVN+YG QR G+
Sbjct:  172 YVHFVLVKENRDTLDVLDSLARALGCRPSVFSFAGIKDRRAVTVQRVSAFKVHPDRLGAIGERSALGV-----GVRLGGVRFAADPVRCGELAGNHFTIVLR-AVPADEVAHVHAAAAALRERGFVNYYGLQRFGN 301          
BLAST of mRNA_P-wetherbeei_contig15626.1.1 vs. uniprot
Match: C5X383_SORBI (TRUD domain-containing protein n=3 Tax=Andropogoneae TaxID=147429 RepID=C5X383_SORBI)

HSP 1 Score: 87.4 bits (215), Expect = 5.250e-17
Identity = 55/129 (42.64%), Postives = 74/129 (57.36%), Query Frame = 1
Query:  103 FLSFALRKEGREHFDVLGALARALRVPTGALTAAGIKDKRAVTTQRVVLRGGIPARQLLATNGTIGGVRVGSIGPAAGPLAAGDLRGNIFRVVLRGATPAEPGALVTAALEALSRSGFVNFYGTQRVGS 489
            FL F L KE ++  + LG + + L V   +   AG KDKRAVTTQ+V L   + A +L A N  + G+RVG        L  G LRGN F + LR    AE   ++ AA+  LS++GF+N+YG QR GS
Sbjct:  232 FLRFNLYKENKDTQEALGVIGKMLGVQPRSFGFAGTKDKRAVTTQQVTLFK-VHASRLAALNSKLAGIRVGDFSYVKEGLTLGQLRGNRFAITLRNVI-AESDDVINAAVNGLSKNGFINYYGLQRFGS 358          
BLAST of mRNA_P-wetherbeei_contig15626.1.1 vs. uniprot
Match: T0SDB0_SAPDV (TRUD domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0SDB0_SAPDV)

HSP 1 Score: 87.0 bits (214), Expect = 6.980e-17
Identity = 57/134 (42.54%), Postives = 78/134 (58.21%), Query Frame = 1
Query:  103 FLSFALRKEGREHFDVLGALARALRVPTGALTAAGIKDKRAVTTQRVVLRGGIPARQLLATNGTIG--GVRVGSIGPAAGPLAAGDLRGNIFRVVLRGA--TPAEPGALVTAALEALSRSGFVNFYGTQRVGSP 492
            ++ F L+K   +HF  L ALARA + PT + T AG KDKRA+TTQR+V +   P R LL  +  +   G+ VG +   A PL  G   GN F + LR    TP     +V AA  ++  +GF+N++G QRVGSP
Sbjct:  250 YVQFVLQKVDVDHFTALEALARAAKTPTSSFTYAGTKDKRAITTQRLVAQSVAP-RALLDAHTALAPMGLAVGHLAYVATPLTLGQSGGNQFTIRLRNVEGTP----DVVNAAFASVGATGFINYFGLQRVGSP 378          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15626.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTL8_ECTSI8.400e-2953.08TRUD domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A2H1CFM5_FASHE9.020e-2041.98TRUD domain-containing protein n=1 Tax=Fasciola he... [more]
A0A8E0RQ08_9TREM6.780e-1941.98tRNA pseudouridine synthase D n=1 Tax=Fasciolopsis... [more]
A0A4E0R8H9_FASHE6.780e-1941.98Pseudouridylate synthase 7 n=2 Tax=Fasciola TaxID=... [more]
K3ZR46_SETIT2.400e-1844.19TRUD domain-containing protein n=4 Tax=Setaria Tax... [more]
A0A067CP05_SAPPC7.930e-1842.42TRUD domain-containing protein n=1 Tax=Saprolegnia... [more]
A0A183AA80_9TREM2.020e-1739.69TRUD domain-containing protein n=1 Tax=Echinostoma... [more]
A0A8J5XT50_DIALT3.850e-1745.59TRUD domain-containing protein n=2 Tax=Diacronema ... [more]
C5X383_SORBI5.250e-1742.64TRUD domain-containing protein n=3 Tax=Andropogone... [more]
T0SDB0_SAPDV6.980e-1742.54TRUD domain-containing protein n=1 Tax=Saprolegnia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15626contigP-wetherbeei_contig15626:98..670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LTL8
PFAMsTruD
Model size492
Max annot lvl2759|Eukaryota
KEGG koko:K06176
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.38e-29
EggNOG OGsCOG0585@1|root,KOG2339@2759|Eukaryota
Ec32 ortholog descriptionPseudouridine synthase, TruD
Ec32 orthologEc-28_003620.1
EC5.4.99.27
Descriptionpseudouridine synthase activity
Cds size492
COG categoryL
BRITEko00000,ko01000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186062.414164-CDS-P-wetherbeei_contig15626:97..1991683186062.414164-CDS-P-wetherbeei_contig15626:97..199Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15626 98..199 -
1683186062.4258833-CDS-P-wetherbeei_contig15626:280..6701683186062.4258833-CDS-P-wetherbeei_contig15626:280..670Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15626 281..670 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15626.1.1prot_P-wetherbeei_contig15626.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15626 98..670 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15626.1.1

>prot_P-wetherbeei_contig15626.1.1 ID=prot_P-wetherbeei_contig15626.1.1|Name=mRNA_P-wetherbeei_contig15626.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=164bp
RGGGGGNDSGGCCGDGVGGESAGNGGTGGGGNSGFLSFALRKEGREHFDV
LGALARALRVPTGALTAAGIKDKRAVTTQRVVLRGGIPARQLLATNGTIG
GVRVGSIGPAAGPLAAGDLRGNIFRVVLRGATPAEPGALVTAALEALSRS
GFVNFYGTQRVGSP
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mRNA from alignment at P-wetherbeei_contig15626:98..670-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15626.1.1 ID=mRNA_P-wetherbeei_contig15626.1.1|Name=mRNA_P-wetherbeei_contig15626.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=573bp|location=Sequence derived from alignment at P-wetherbeei_contig15626:98..670- (Phaeothamnion wetherbeei SAG_119_79)
CGCGGTGGCGGTGGTGGCAACGACAGCGGCGGCTGCTGTGGCGATGGCGT CGGCGGCGAGAGCGCCGGCAACGGCGGGACCGGCGGCGGCGGCAACAGCG GCTTCCTGAGCTTTGCGCTCCGAAAGGAGGGCCGCGAGCACTTCGATGTT TTGGGTGCCCTGGCGCGGGCGCTGCGCGTCCCGACGGGTGCGCTCACAGC CGCCGGCATCAAAGACAAGCGGGCCGTCACCACGCAGCGCGTCGTGCTGC GCGGCGGCATCCCGGCGCGGCAGCTGCTCGCGACCAATGGCACCATCGGC GGCGTGCGGGTCGGGAGCATTGGCCCTGCGGCCGGACCTCTCGCCGCCGG AGACCTGCGGGGAAACATTTTTCGAGTGGTGCTGCGCGGCGTCCAGCCTG CCGCTACCGCCGCCACCGCTGCCGCCGCCGCCGTCAGCGCTGGGTCTGCG AACCGCAACGGGGCGGTAGAGGCGACACCTGCGGAACCGGGGGCGCTAGT TACGGCGGCGTTGGAGGCGCTGTCGCGATCGGGCTTCGTCAATTTTTACG GCACGCAGCGCGTGGGCAGCCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15626:98..670-

>mRNA_P-wetherbeei_contig15626.1.1 ID=mRNA_P-wetherbeei_contig15626.1.1|Name=mRNA_P-wetherbeei_contig15626.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig15626:98..670- (Phaeothamnion wetherbeei SAG_119_79)
CGCGGTGGCGGTGGTGGCAACGACAGCGGCGGCTGCTGTGGCGATGGCGT
CGGCGGCGAGAGCGCCGGCAACGGCGGGACCGGCGGCGGCGGCAACAGCG
GCTTCCTGAGCTTTGCGCTCCGAAAGGAGGGCCGCGAGCACTTCGATGTT
TTGGGTGCCCTGGCGCGGGCGCTGCGCGTCCCGACGGGTGCGCTCACAGC
CGCCGGCATCAAAGACAAGCGGGCCGTCACCACGCAGCGCGTCGTGCTGC
GCGGCGGCATCCCGGCGCGGCAGCTGCTCGCGACCAATGGCACCATCGGC
GGCGTGCGGGTCGGGAGCATTGGCCCTGCGGCCGGACCTCTCGCCGCCGG
AGACCTGCGGGGAAACATTTTTCGAGTGGTGCTGCGCGGCGCGACACCTG
CGGAACCGGGGGCGCTAGTTACGGCGGCGTTGGAGGCGCTGTCGCGATCG
GGCTTCGTCAATTTTTACGGCACGCAGCGCGTGGGCAGCCCC
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