mRNA_P-wetherbeei_contig15618.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15618.1.1
Unique NamemRNA_P-wetherbeei_contig15618.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15618.1.1 vs. uniprot
Match: A0A6J8F0U4_MYTCO (ExlX n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8F0U4_MYTCO)

HSP 1 Score: 116 bits (290), Expect = 5.220e-29
Identity = 60/140 (42.86%), Postives = 84/140 (60.00%), Query Frame = 1
Query:    1 VAMNNIDYANGMSCGMCIAASGTGSGSGRNPLPTNKIRYGVSKDVVVVDRCPECGKGSVDWRDNTQLDGRFGMKWYPVQCPVGATKLQYKTEGSNVWYLKLSIRNSRVPVSAVAIDCNHDGNWANMAHSGTDHAWIYNSG 420
            +A+N   + N +SCGMC    G+G G G +P+  + I       V V D CPEC  GSVD  +N   DGR+ ++   VQCPVG TKL+YK +GSN WYLKL +RN+R+PV+ +++       WA M H+ +D  W+   G
Sbjct:   70 IALNKPQFFNSLSCGMCFKVHGSGKGLGSDPIVGDSI-------VFVKDLCPECLAGSVDLAENG--DGRWEVEIQAVQCPVGNTKLEYKFQGSNPWYLKLQVRNARIPVTRLSLWQPKSQRWAAMQHT-SDGFWLMGPG 199          
BLAST of mRNA_P-wetherbeei_contig15618.1.1 vs. uniprot
Match: A0A210QVR1_MIZYE (Expansin-YoaJ n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210QVR1_MIZYE)

HSP 1 Score: 115 bits (287), Expect = 1.190e-28
Identity = 63/163 (38.65%), Postives = 95/163 (58.28%), Query Frame = 1
Query:    1 VAMNNIDYANGMSCGMCIAASGTGSGSGRNPLPTNKIRYGVSKDVVVVDRCPECGKGSVDWRDNTQLDGRFGMKWYPVQCPVGATKLQYKTEGSNVWYLKLSIRNSRVPVSAVAIDCNHDGNWANMAHSGTDHAWIYNSGSEGLVRSGCRLRVSSVLGGAVVE 489
            VA+N+  +   ++CGMC   +GTG G G +P+    I       V V D CPEC  GSVD+  N   DGR+G+    +QCPVG T ++YK +GSN +YLKL +RN+R+P + V +    D ++A+  H+ TD  W   +G +  VR    LR+++  G  V++
Sbjct:   66 VALNSPQFFGSLACGMCFTVNGTGHGLGNDPINGQHI-------VFVKDLCPECHAGSVDFAKNG--DGRWGISIRAIQCPVGNTPIEYKFQGSNDYYLKLQVRNARIPATKVEMR-QQDNHYASFQHT-TDGFWTMGAGFDKPVRYPIHLRLTAANGDTVLD 217          
BLAST of mRNA_P-wetherbeei_contig15618.1.1 vs. uniprot
Match: A0A2C9LCA8_BIOGL (Uncharacterized protein n=2 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9LCA8_BIOGL)

HSP 1 Score: 114 bits (285), Expect = 2.470e-28
Identity = 59/140 (42.14%), Postives = 81/140 (57.86%), Query Frame = 1
Query:    1 VAMNNIDYANGMSCGMCIAASGTGSGSGRNPLPTNKIRYGVSKDVVVVDRCPECGKGSVDWRDNTQLDGRFGMKWYPVQCPVGATKLQYKTEGSNVWYLKLSIRNSRVPVSAVAIDCNHDGNWANMAHSGTDHAWIYNSG 420
            VA+N   + N M+CGMCI   G+G G G NP+    I Y       V D CP C +G VD+      DGR+ +    VQCPVG++ +QY  +GSN WY+KL IRN+R+P++ V I+ N  G W  + HS  D  W+ + G
Sbjct:   70 VALNRPQFLNSMTCGMCIKVVGSGHGLGNNPIVGEHIVY-------VKDMCPVCHEGDVDFA--LDGDGRWNITMQAVQCPVGSSTIQYAFQGSNAWYIKLQIRNARIPITGVQIEKN--GAWQTLTHS-IDGYWLLSGG 197          
BLAST of mRNA_P-wetherbeei_contig15618.1.1 vs. uniprot
Match: V4ATR2_LOTGI (Expansin-like EG45 domain-containing protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4ATR2_LOTGI)

HSP 1 Score: 112 bits (280), Expect = 1.310e-27
Identity = 60/136 (44.12%), Postives = 81/136 (59.56%), Query Frame = 1
Query:    1 VAMNNIDYANGMSCGMCIAASGTGSGSGRNPLPTNKIRYGVSKDVVVVDRCPECGKGSVDWRDNTQLDGRFGMKWYPVQCPVGATKLQYKTEGSNVWYLKLSIRNSRVPVSAVAIDCNHDGNWANMAHSGTDHAWI 408
            VA+N   +    SCGMC   +  G G G NP+  + +       V V D CPEC  GS+D+  N   DGR+ ++   VQCPVG TKL+YK +GSN +Y+KL IRN+R+P  AVA+    +G+W  M+HS  D  WI
Sbjct:   68 VALNKPQFLGSYSCGMCFKVNSNGQGLGTNPIKGHFV-------VFVADLCPECKTGSLDFAING--DGRWKIEIQAVQCPVGNTKLEYKFQGSNSYYIKLQIRNARIP--AVAVKIKQNGSWKAMSHS-ADGFWI 191          
BLAST of mRNA_P-wetherbeei_contig15618.1.1 vs. uniprot
Match: A0A8B6C3Z3_MYTGA (Expansin n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6C3Z3_MYTGA)

HSP 1 Score: 116 bits (290), Expect = 2.910e-27
Identity = 61/140 (43.57%), Postives = 83/140 (59.29%), Query Frame = 1
Query:    1 VAMNNIDYANGMSCGMCIAASGTGSGSGRNPLPTNKIRYGVSKDVVVVDRCPECGKGSVDWRDNTQLDGRFGMKWYPVQCPVGATKLQYKTEGSNVWYLKLSIRNSRVPVSAVAIDCNHDGNWANMAHSGTDHAWIYNSG 420
            VA+N   + N +SCGMC    G+G G G +P+  +         V V D CPEC  GSVD  +N   DGR+ ++   VQCPVG TKL+YK +GSN WYLKL +RN+R+PV+ +++       WA M HS +D  W+   G
Sbjct:  372 VALNRPQFFNSLSCGMCFKVHGSGKGLGSDPIVGDST-------VFVKDLCPECLAGSVDLAENG--DGRWEVEIQAVQCPVGNTKLEYKFQGSNPWYLKLQVRNARIPVTGLSVWQPKSQRWAAMHHS-SDGFWLMGPG 501          
BLAST of mRNA_P-wetherbeei_contig15618.1.1 vs. uniprot
Match: UPI001EE62068 (expansin-YoaJ-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE62068)

HSP 1 Score: 109 bits (273), Expect = 1.570e-26
Identity = 60/161 (37.27%), Postives = 96/161 (59.63%), Query Frame = 1
Query:    1 VAMNNIDYANGMSCGMCIAASGTGSGSGRNPLPTNKIRYGVSKDVVVVDRCPECGKGSVDWRDNTQLDGRFGMKWYPVQCPVGATKLQYKTEGSNVWYLKLSIRNSRVPVSAVAIDCNHDGNWANMAHSGTDHAWIYNSGSEGLVRSGCRLRVSSVLGGAV 483
            VA+N   Y+  ++CGMC    GTG G+G +P+  +         V V D CPEC +G +D  +  + DG + ++   VQCPVG TK++YK +GSN WY+KL +RN+R+PV+++ +D   DG    M H+ +D  W     S+GL+    +L ++S+ G ++
Sbjct:   74 VAINAEQYSGSLACGMCFRVLGTGVGTGSDPIKGDFY-------VFVNDICPECKEGDIDLAE--EGDGSWEVEIQAVQCPVGNTKIEYKFQGSNAWYIKLQVRNARLPVNSILVD--RDGRPEPMKHT-SDGFWEL---SDGLIELPIKLEMTSINGESI 219          
BLAST of mRNA_P-wetherbeei_contig15618.1.1 vs. uniprot
Match: K1QR45_CRAGI (Expansin-yoaJ n=1 Tax=Crassostrea gigas TaxID=29159 RepID=K1QR45_CRAGI)

HSP 1 Score: 108 bits (269), Expect = 5.150e-26
Identity = 54/139 (38.85%), Postives = 80/139 (57.55%), Query Frame = 1
Query:    1 VAMNNIDYANGMSCGMCIAASGTGSGSGRNPLPTNKIRYGVSKDVVVVDRCPECGKGSVDWRDNTQLDGRFGMKWYPVQCPVGATKLQYKTEGSNVWYLKLSIRNSRVPVSAVAIDCNHDGNWANMAHSGTDHAWIYNS 417
            VA+N   +   +SCGMC    GTG G+G +P+      +       V D CPEC  G++D  +N   DGR+ ++   +QCPVG  K++YK +GSN WYLKL IRN+R+P + V +       W+ + H+ TD  W++ S
Sbjct:   62 VALNAPQFFGSLSCGMCFRVHGTGQGAGNDPITGTFTAF-------VKDLCPECHAGALDLAENG--DGRWKIEIQAIQCPVGNGKIEYKFQGSNNWYLKLQIRNARIPATGVEMYQPKSNRWSALHHT-TDGFWVFGS 190          
BLAST of mRNA_P-wetherbeei_contig15618.1.1 vs. uniprot
Match: A0A8B8DMT4_CRAVI (uncharacterized protein LOC111128005 isoform X2 n=2 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8DMT4_CRAVI)

HSP 1 Score: 107 bits (268), Expect = 7.250e-26
Identity = 54/139 (38.85%), Postives = 80/139 (57.55%), Query Frame = 1
Query:    1 VAMNNIDYANGMSCGMCIAASGTGSGSGRNPLPTNKIRYGVSKDVVVVDRCPECGKGSVDWRDNTQLDGRFGMKWYPVQCPVGATKLQYKTEGSNVWYLKLSIRNSRVPVSAVAIDCNHDGNWANMAHSGTDHAWIYNS 417
            VA+N   +   +SCGMC    GTG G+G +P+      +       V D CPEC  G++D  +N   DGR+ ++   +QCPVG  K++YK +GSN WYLKL IRN+R+P + V +       W+ + H+ TD  W++ S
Sbjct:   62 VALNAPQFFGSLSCGMCFRVHGTGQGAGNDPITGTFTAF-------VKDLCPECHAGALDLAENG--DGRWRIEIQAIQCPVGNGKIEYKFQGSNPWYLKLQIRNARIPATTVEMYQPKSRRWSALHHT-TDGFWVFGS 190          
BLAST of mRNA_P-wetherbeei_contig15618.1.1 vs. uniprot
Match: UPI001EB09B08 (expansin-YoaJ-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB09B08)

HSP 1 Score: 106 bits (265), Expect = 1.980e-25
Identity = 61/161 (37.89%), Postives = 94/161 (58.39%), Query Frame = 1
Query:    1 VAMNNIDYANGMSCGMCIAASGTGSGSGRNPLPTNKIRYGVSKDVVVVDRCPECGKGSVDWRDNTQLDGRFGMKWYPVQCPVGATKLQYKTEGSNVWYLKLSIRNSRVPVSAVAIDCNHDGNWANMAHSGTDHAWIYNSGSEGLVRSGCRLRVSSVLGGAV 483
            VA+N   Y+  ++CGMC    G G G+G +P+  +         V V D CPEC +G +D  +  + DG + ++   VQCPVG TK++YK +GSN WY+KL +RN+R+PV+++ +D   DG    M H+  D  W     S+GLV    +L +++V G +V
Sbjct:   65 VAINAEQYSGSIACGMCFRVRGKGVGTGSDPIQGDFY-------VFVNDICPECKEGDIDLAE--EGDGSWEVEIQAVQCPVGNTKIEYKFQGSNPWYIKLQVRNARIPVNSIMVD--RDGQPHPMKHT-ADGFWEL---SDGLVELPIKLEMTAVNGESV 210          
BLAST of mRNA_P-wetherbeei_contig15618.1.1 vs. uniprot
Match: A0A8B8E688_CRAVI (LOW QUALITY PROTEIN: uncharacterized protein LOC111128007 n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8E688_CRAVI)

HSP 1 Score: 103 bits (257), Expect = 3.040e-24
Identity = 55/139 (39.57%), Postives = 76/139 (54.68%), Query Frame = 1
Query:    1 VAMNNIDYANGMSCGMCIAASGTGSGSGRNPLPTNKIRYGVSKDVVVVDRCPECGKGSVDWRDNTQLDGRFGMKWYPVQCPVGATKLQYKTEGSNVWYLKLSIRNSRVPVSAVAIDCNHDGNWANMAHSGTDHAWIYNS 417
            VA+N   +   +SCG C    GTG GSG +P+      +       V D CP C  G +D  +N   DGR+ ++   +QCPVG  K++YK +GSN WYLKL IRN+R+P + V +       WA M  S TD  W++ S
Sbjct:   62 VALNAPQFFGSLSCGXCFRVRGTGQGSGNDPITGTFTAF-------VKDLCPGCRAGDLDLAENG--DGRWRIEIQAIQCPVGNGKIEYKFQGSNPWYLKLQIRNARIPATTVEMYQPKSRRWAAMRPS-TDGFWVFGS 190          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15618.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6J8F0U4_MYTCO5.220e-2942.86ExlX n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0... [more]
A0A210QVR1_MIZYE1.190e-2838.65Expansin-YoaJ n=1 Tax=Mizuhopecten yessoensis TaxI... [more]
A0A2C9LCA8_BIOGL2.470e-2842.14Uncharacterized protein n=2 Tax=Biomphalaria glabr... [more]
V4ATR2_LOTGI1.310e-2744.12Expansin-like EG45 domain-containing protein n=1 T... [more]
A0A8B6C3Z3_MYTGA2.910e-2743.57Expansin n=1 Tax=Mytilus galloprovincialis TaxID=2... [more]
UPI001EE620681.570e-2637.27expansin-YoaJ-like n=1 Tax=Haliotis rubra TaxID=36... [more]
K1QR45_CRAGI5.150e-2638.85Expansin-yoaJ n=1 Tax=Crassostrea gigas TaxID=2915... [more]
A0A8B8DMT4_CRAVI7.250e-2638.85uncharacterized protein LOC111128005 isoform X2 n=... [more]
UPI001EB09B081.980e-2537.89expansin-YoaJ-like n=1 Tax=Haliotis rufescens TaxI... [more]
A0A8B8E688_CRAVI3.040e-2439.57LOW QUALITY PROTEIN: uncharacterized protein LOC11... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15618contigP-wetherbeei_contig15618:161..840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog248742.XP_005650571.1
Model size489
Max annot lvl2759|Eukaryota
KEGG koko:K20628
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.32e-19
EggNOG OGs2D16Q@1|root,2SGXE@2759|Eukaryota
Cds size483
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186062.0170612-CDS-P-wetherbeei_contig15618:160..5141683186062.0170612-CDS-P-wetherbeei_contig15618:160..514Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15618 161..514 -
1683186062.0270061-CDS-P-wetherbeei_contig15618:705..8341683186062.0270061-CDS-P-wetherbeei_contig15618:705..834Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15618 706..834 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186062.036173-UTR-P-wetherbeei_contig15618:834..8401683186062.036173-UTR-P-wetherbeei_contig15618:834..840Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15618 835..840 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15618.1.1prot_P-wetherbeei_contig15618.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15618 161..834 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15618.1.1

>prot_P-wetherbeei_contig15618.1.1 ID=prot_P-wetherbeei_contig15618.1.1|Name=mRNA_P-wetherbeei_contig15618.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=161bp
MNNIDYANGMSCGMCIAASGTGSGSGRNPLPTNKIRYGVSKDVVVVDRCP
ECGKGSVDWRDNTQLDGRFGMKWYPVQCPVGATKLQYKTEGSNVWYLKLS
IRNSRVPVSAVAIDCNHDGNWANMAHSGTDHAWIYNSGSEGLVRSGCRLR
VSSVLGGAVVE
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mRNA from alignment at P-wetherbeei_contig15618:161..840-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15618.1.1 ID=mRNA_P-wetherbeei_contig15618.1.1|Name=mRNA_P-wetherbeei_contig15618.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=680bp|location=Sequence derived from alignment at P-wetherbeei_contig15618:161..840- (Phaeothamnion wetherbeei SAG_119_79)
GTGGCCATGAACAACATTGACTACGCCAACGGCATGTCATGCGGTATGTG CATCGCTGCATCGGGCACCGGTTCTGGATCGGGCCGCAACCCGCTCCCCA CTAACAAGATTCGCTATGGGGTAAGCAAAGATGTGGTGCACCATTTGAAC TGGTGATTGGCAGACTTGGGCGAGGGATCGACTGCACACCATCTGTTATC TCGAAGATATCATTTCCGGACCACGCTTCATTTACTTCTGCGACGTTCGC TTCTAATCAGCCCTCGTCCTCCTCAACTCTCTCACCTTCCGGTTCAATAC AAAACCCTTCCATTCTCGACGCGCAGGTGGTTGTCGACCGCTGCCCCGAG TGCGGCAAGGGCTCCGTGGACTGGCGGGATAACACGCAGCTCGACGGACG TTTCGGCATGAAGTGGTACCCCGTACAGTGCCCCGTCGGTGCCACCAAGC TGCAGTACAAGACGGAGGGCAGTAACGTCTGGTACCTCAAGCTCTCAATC CGCAACAGCCGCGTCCCGGTGTCGGCCGTAGCCATCGACTGCAACCACGA CGGCAACTGGGCCAACATGGCACACTCGGGAACGGACCATGCCTGGATCT ACAACTCAGGCTCGGAGGGCCTCGTGCGCTCCGGCTGCCGCCTCCGCGTC TCCAGCGTCCTCGGCGGAGCCGTCGTTGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15618:161..840-

>mRNA_P-wetherbeei_contig15618.1.1 ID=mRNA_P-wetherbeei_contig15618.1.1|Name=mRNA_P-wetherbeei_contig15618.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig15618:161..840- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACAACATTGACTACGCCAACGGCATGTCATGCGGTATGTGCATCGC
TGCATCGGGCACCGGTTCTGGATCGGGCCGCAACCCGCTCCCCACTAACA
AGATTCGCTATGGGGTAAGCAAAGATGTGGTGGTTGTCGACCGCTGCCCC
GAGTGCGGCAAGGGCTCCGTGGACTGGCGGGATAACACGCAGCTCGACGG
ACGTTTCGGCATGAAGTGGTACCCCGTACAGTGCCCCGTCGGTGCCACCA
AGCTGCAGTACAAGACGGAGGGCAGTAACGTCTGGTACCTCAAGCTCTCA
ATCCGCAACAGCCGCGTCCCGGTGTCGGCCGTAGCCATCGACTGCAACCA
CGACGGCAACTGGGCCAACATGGCACACTCGGGAACGGACCATGCCTGGA
TCTACAACTCAGGCTCGGAGGGCCTCGTGCGCTCCGGCTGCCGCCTCCGC
GTCTCCAGCGTCCTCGGCGGAGCCGTCGTTGAG
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