mRNA_P-wetherbeei_contig15565.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15565.1.1
Unique NamemRNA_P-wetherbeei_contig15565.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15565.1.1 vs. uniprot
Match: A0A6H5JBJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ8_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 5.600e-23
Identity = 56/118 (47.46%), Postives = 76/118 (64.41%), Query Frame = 1
Query:   85 AVGSRATLGRGVGGI-------------GSVEVAVPQQAKPIWFAGSGAVRAEWSALPGGAVITRMLEGLEEAGEYF-RYVAVVEGLLCAHLRATRENGAARLVRGLWRQLIVTCLAF 396
            A G+   +G G GG              G   V VP++ +PIWFAGSGA++AEWSALPGGA +   ++ +  A  ++ +YVAVVEGLL AHLRA  + G ++LV+ LWRQL+ TC+AF
Sbjct:  840 ATGAAKAVGGGRGGFRGSKAISVPTRGGGEAVVMVPKRPRPIWFAGSGAIQAEWSALPGGARVVCGVKFVSAATHWYAKYVAVVEGLLTAHLRADDQQGPSQLVQKLWRQLVATCIAF 957          
BLAST of mRNA_P-wetherbeei_contig15565.1.1 vs. uniprot
Match: A0A7S1U6F4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U6F4_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.000e-10
Identity = 38/109 (34.86%), Postives = 54/109 (49.54%), Query Frame = 1
Query:  142 VAVPQQAKPIWFAGSGAVRAEWSALPGGAVITRMLEGLEEAGEYFRYVAVVEGLLCAHLR------------------------ATRENGAARLVRGLWRQLIVTCLAF 396
            + VP+Q++PIWF G+GA+  EWS+LP G    R L+ LEE  +Y  Y+A VE  L  + R                        A  +     L R LWRQ++V+ +AF
Sbjct:  576 IVVPRQSQPIWFKGTGAIAPEWSSLPDGDDAARHLQRLEEERQYAAYIATVEAFLNGYQRSGALEQEVLQADHSLVSSLTTSFDAVDDGEQNELFRRLWRQMVVSAIAF 684          
BLAST of mRNA_P-wetherbeei_contig15565.1.1 vs. uniprot
Match: A0A0P1AJK2_PLAHL (CEP76-C2 domain-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AJK2_PLAHL)

HSP 1 Score: 57.0 bits (136), Expect = 8.150e-7
Identity = 38/111 (34.23%), Postives = 57/111 (51.35%), Query Frame = 1
Query:  130 GSVEVAVPQQAKPIWFAGSGAVRAEWSALPGGAV--------------ITRMLEG--------LEEAGEYFRYVAVVEGLLCAHLRATRENGAARLVRGLWRQLIVTCLAF 396
            G V + +P+  +PIWFAG+GAV+A W AL  G                 T M E         LE   ++   ++++E LL + +R+   +GA +L   LW+QL+VTC AF
Sbjct: 1163 GKVIINMPKIPRPIWFAGTGAVKAVWCALANGLAELRPQHTNTTTNLSTTSMCEHQLCEEVRQLEAKKKFAHCISILESLLTSLIRS---HGADKLETQLWKQLVVTCNAF 1270          
BLAST of mRNA_P-wetherbeei_contig15565.1.1 vs. uniprot
Match: A0A662WPX4_9STRA (COesterase domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WPX4_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.520e-6
Identity = 40/112 (35.71%), Postives = 54/112 (48.21%), Query Frame = 1
Query:  130 GSVEVAVPQQAKPIWFAGSGAVRAEWSALPGG------------AVITRMLE-----------GLEEAGEYFRYVAVVEGLLCAHLRATRENGAARLVRGLWRQLIVTCLAF 396
            G V + +P+  +PIWFAG+GAV+A W AL  G            AV T  L             LE   ++ + +  +E LL A +RA    G   L   LW+QL+VTC AF
Sbjct: 1082 GKVVINMPKVPRPIWFAGTGAVKAVWCALADGFSQLRPQHAAPSAVTTSTLSMCDHRLCEEVRQLEAKKKFAQCITTLESLLIALVRA---RGVDELETKLWKQLVVTCNAF 1190          
BLAST of mRNA_P-wetherbeei_contig15565.1.1 vs. uniprot
Match: A0A2D4BYJ7_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BYJ7_PYTIN)

HSP 1 Score: 54.7 bits (130), Expect = 4.610e-6
Identity = 40/117 (34.19%), Postives = 52/117 (44.44%), Query Frame = 1
Query:  130 GSVEVAVPQQAKPIWFAGSGAVRAEWSAL------------------PGGAV----------ITRMLEGLEEAGEYFRYVAVVEGLLCAHLRATRENGAARLVRGLWRQLIVTCLAF 396
            G V + +P+  +PIWFAG+GAV+A W AL                  PG A           +   +  LE    Y + +  VE LL    RA    G A L   LW+QL+VTC AF
Sbjct:  111 GRVAIRLPKIPRPIWFAGTGAVKAVWCALAQGFQSLQPLSPHAMTVSPGKAAQRALAVCDHRLCEEIRRLEAQQHYDQCITTVETLLIXXXRA---RGVASLESKLWKQLVVTCNAF 224          
BLAST of mRNA_P-wetherbeei_contig15565.1.1 vs. uniprot
Match: W2MAT8_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica TaxID=4792 RepID=W2MAT8_PHYPR)

HSP 1 Score: 54.7 bits (130), Expect = 4.870e-6
Identity = 37/111 (33.33%), Postives = 55/111 (49.55%), Query Frame = 1
Query:  130 GSVEVAVPQQAKPIWFAGSGAVRAEWSALP------------GGAVITRM----------LEGLEEAGEYFRYVAVVEGLLCAHLRATRENGAARLVRGLWRQLIVTCLAF 396
            G V + +P+  +PIWFAG+GAV+A W AL              G++ T +          +  LE   ++ + +  +E LL A +RA    G   L   LW+QL+VTC AF
Sbjct:  282 GKVIINMPKVPRPIWFAGTGAVKAVWCALADGFSQLRPQHSIAGSITTSVSVCDHRLCEEVRQLEAKKKFTQCITTLESLLIALVRA---RGVDELETKLWKQLVVTCNAF 389          
BLAST of mRNA_P-wetherbeei_contig15565.1.1 vs. uniprot
Match: A0A8K1C4C5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4C5_PYTOL)

HSP 1 Score: 54.3 bits (129), Expect = 6.790e-6
Identity = 41/114 (35.96%), Postives = 54/114 (47.37%), Query Frame = 1
Query:  130 GSVEVAVPQQAKPIWFAGSGAVRAEWSALPGG---------------------AV----ITRMLEGLEEAGEYFRYVAVVEGLLCAHLRATRENGAARLVRGLWRQLIVTCLAF 396
            G V V +P+  KPIWFAG+GAV+A W AL  G                     AV    +   L  +E   +Y + +  VE LL + +RA    G   L   LW+QL+VTC AF
Sbjct:  437 GKVVVNMPKIPKPIWFAGTGAVKAVWCALAQGFESLNSTSTKSSPSKKPQSVLAVCEHNLCEELRQMEAKQQYAQCITTVETLLISLVRA---RGVDVLETKLWKQLVVTCNAF 547          
BLAST of mRNA_P-wetherbeei_contig15565.1.1 vs. uniprot
Match: W2PJR0_PHYPN (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2PJR0_PHYPN)

HSP 1 Score: 54.3 bits (129), Expect = 6.820e-6
Identity = 37/111 (33.33%), Postives = 55/111 (49.55%), Query Frame = 1
Query:  130 GSVEVAVPQQAKPIWFAGSGAVRAEWSALP------------GGAVITRM----------LEGLEEAGEYFRYVAVVEGLLCAHLRATRENGAARLVRGLWRQLIVTCLAF 396
            G V + +P+  +PIWFAG+GAV+A W AL              G++ T +          +  LE   ++ + +  +E LL A +RA    G   L   LW+QL+VTC AF
Sbjct:  451 GKVIINMPKVPRPIWFAGTGAVKAIWCALADGFSQLRPQHSIAGSITTSVSVCDHRLCEEVRQLEAKKKFTQCITTLESLLIALVRA---RGVDELETKLWKQLVVTCNAF 558          
BLAST of mRNA_P-wetherbeei_contig15565.1.1 vs. uniprot
Match: D8LGQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGQ8_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 6.910e-6
Identity = 29/64 (45.31%), Postives = 38/64 (59.38%), Query Frame = 1
Query:   85 AVGSRATLGRGVGGI-------------GSVEVAVPQQAKPIWFAGSGAVRAEWSALPGGAVIT 237
            A G+   +G G GG              G   V VP++ +PIWFAGSGA++AEWSALPGGA ++
Sbjct:  840 ATGAAKAVGGGRGGFRGSKAISVLTRGGGEAVVMVPKRPRPIWFAGSGAIQAEWSALPGGARVS 903          
BLAST of mRNA_P-wetherbeei_contig15565.1.1 vs. uniprot
Match: A0A329SKF6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SKF6_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 9.290e-6
Identity = 38/113 (33.63%), Postives = 55/113 (48.67%), Query Frame = 1
Query:  124 GIGSVEVAVPQQAKPIWFAGSGAVRAEWSALPGG--------AV--------------ITRMLEGLEEAGEYFRYVAVVEGLLCAHLRATRENGAARLVRGLWRQLIVTCLAF 396
            G G V + +P+  +PIWFAG+GAV+A W +L  G        AV              +   +  LE   ++ + +  +E LL A +RA    G   L   LW+QL+VTC AF
Sbjct:  460 GDGKVIINMPKVPRPIWFAGTGAVKAVWCSLADGFPQLRPQHAVAGATGSTTAMCDHRLCEEVRQLEAKKKFTQCITTLESLLIALIRA---RGVDELETKLWKQLVVTCNAF 569          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15565.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5JBJ8_9PHAE5.600e-2347.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1U6F4_9STRA1.000e-1034.86Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A0P1AJK2_PLAHL8.150e-734.23CEP76-C2 domain-containing protein n=1 Tax=Plasmop... [more]
A0A662WPX4_9STRA1.520e-635.71COesterase domain-containing protein n=1 Tax=Notho... [more]
A0A2D4BYJ7_PYTIN4.610e-634.19Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
W2MAT8_PHYPR4.870e-633.33Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
A0A8K1C4C5_PYTOL6.790e-635.96Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W2PJR0_PHYPN6.820e-633.33Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]
D8LGQ8_ECTSI6.910e-645.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A329SKF6_9STRA9.290e-633.63Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15565contigP-wetherbeei_contig15565:1031..1594 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog112098.XP_008605257.1
Model size396
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.09e-09
EggNOG OGs29KZ4@1|root,2RU8C@2759|Eukaryota
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_005390.1
Cds size396
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186060.1543047-CDS-P-wetherbeei_contig15565:1030..13751683186060.1543047-CDS-P-wetherbeei_contig15565:1030..1375Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15565 1031..1375 +
1683186060.1648972-CDS-P-wetherbeei_contig15565:1543..15941683186060.1648972-CDS-P-wetherbeei_contig15565:1543..1594Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15565 1544..1594 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15565.1.1prot_P-wetherbeei_contig15565.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15565 1031..1594 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15565.1.1

>prot_P-wetherbeei_contig15565.1.1 ID=prot_P-wetherbeei_contig15565.1.1|Name=mRNA_P-wetherbeei_contig15565.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=132bp
MTGTAADADADGGDGGNGGGGGGGTGVGAVGSRATLGRGVGGIGSVEVAV
PQQAKPIWFAGSGAVRAEWSALPGGAVITRMLEGLEEAGEYFRYVAVVEG
LLCAHLRATRENGAARLVRGLWRQLIVTCLAF
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mRNA from alignment at P-wetherbeei_contig15565:1031..1594+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15565.1.1 ID=mRNA_P-wetherbeei_contig15565.1.1|Name=mRNA_P-wetherbeei_contig15565.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=564bp|location=Sequence derived from alignment at P-wetherbeei_contig15565:1031..1594+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACTGGCACTGCCGCGGACGCTGACGCCGACGGCGGCGACGGCGGCAA TGGGGGCGGCGGCGGCGGTGGCACGGGCGTGGGGGCGGTCGGGAGCCGGG CAACGCTCGGACGCGGCGTCGGTGGCATCGGCAGTGTCGAAGTGGCGGTG CCGCAGCAGGCCAAACCCATCTGGTTCGCCGGGTCGGGCGCCGTGCGGGC GGAGTGGTCGGCTCTGCCGGGCGGTGCCGTCATCACGCGAATGCTGGAAG GGCTCGAGGAAGCCGGCGAGTATTTTCGCTACGTGGCGGTGGTGGAAGGG CTTCTGTGCGCTCATCTGCGAGCCACGCGCGAGAACGGCGCCGCCGTCCT TGGCGGCGGCGACGGCGACATCGGTGGCAGCGATAGCGGTGGATCGCTGA TAATGGCTGCGGAATCCATCAGCAAAATCGGCAGCGTCGAACAGATGACA AAGTCGACATCGTCATCCGAGGAGCAGGCGGCGGCGGCGGCGGTGGCTCG CGAGACGCACAAGCGCCTCGTCCGTGGGCTGTGGCGGCAGCTCATCGTGA CCTGTCTCGCCTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15565:1031..1594+

>mRNA_P-wetherbeei_contig15565.1.1 ID=mRNA_P-wetherbeei_contig15565.1.1|Name=mRNA_P-wetherbeei_contig15565.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig15565:1031..1594+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACTGGCACTGCCGCGGACGCTGACGCCGACGGCGGCGACGGCGGCAA
TGGGGGCGGCGGCGGCGGTGGCACGGGCGTGGGGGCGGTCGGGAGCCGGG
CAACGCTCGGACGCGGCGTCGGTGGCATCGGCAGTGTCGAAGTGGCGGTG
CCGCAGCAGGCCAAACCCATCTGGTTCGCCGGGTCGGGCGCCGTGCGGGC
GGAGTGGTCGGCTCTGCCGGGCGGTGCCGTCATCACGCGAATGCTGGAAG
GGCTCGAGGAAGCCGGCGAGTATTTTCGCTACGTGGCGGTGGTGGAAGGG
CTTCTGTGCGCTCATCTGCGAGCCACGCGCGAGAACGGCGCCGCCCGCCT
CGTCCGTGGGCTGTGGCGGCAGCTCATCGTGACCTGTCTCGCCTTC
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