mRNA_P-wetherbeei_contig15564.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15564.2.1
Unique NamemRNA_P-wetherbeei_contig15564.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15564.2.1 vs. uniprot
Match: A0A7C4XMN7_9HYPH (DUF459 domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4XMN7_9HYPH)

HSP 1 Score: 147 bits (370), Expect = 1.370e-39
Identity = 76/135 (56.30%), Postives = 97/135 (71.85%), Query Frame = 1
Query:    7 SPGQASTAPQAGD----LRADNVRVSFRSAIAGGREEQVTIEIVRPAITQSVIQLVTRRDRGDKPSQVGDTLTDTLSNGLLVMRSITPSRGADRGQSRAALTQQPFFIALSKGERLPPKPGRADDFRWPRSDDIP 399
            +P QA +AP++G+     RADN +VSFR   A GREEQVT+EI+RPAI  SVI LVTRR+ GD+ + VG+T+T+TL+NG++VM S+T +        R   TQ PFF  L KGER  P+PGRADDFRWPR DD+P
Sbjct:  289 APRQAGSAPRSGEPGGSTRADNTKVSFRVPGASGREEQVTVEILRPAIPASVIALVTRRESGDRATPVGETVTETLANGVMVMGSLTVTATPSLKGQRLPPTQMPFFRVLVKGERQTPRPGRADDFRWPREDDVP 423          
BLAST of mRNA_P-wetherbeei_contig15564.2.1 vs. uniprot
Match: A0A2W4R8Y6_9PROT (DUF459 domain-containing protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4R8Y6_9PROT)

HSP 1 Score: 136 bits (342), Expect = 2.790e-35
Identity = 68/126 (53.97%), Postives = 88/126 (69.84%), Query Frame = 1
Query:   31 PQAGDLRADNVRVSFRSAIAGGREEQVTIEIVRPAITQSVIQLVTRRDRGDKPSQVGDTLTDTLSNGLLVMRSITP--SRGADRGQSRAALTQQPFFIALSKGERLPPKPGRADDFRWPRSDDIPP 402
            P+ G+L+A+N  VS +    GGR E++T+EIVRPAI  SV+ LV+RR   D+P+Q+GDT+ DTL  GL V+ SITP  + G+   + R A TQ PFF  L KGER+PPKPGRADDF WP  D + P
Sbjct:  338 PRVGELKAENSTVSIKVPGNGGRSEEITVEIVRPAIPASVVALVSRRQSADRPAQLGDTVPDTLPGGLTVLSSITPGLAAGSQAHRRRLAPTQSPFFKVLVKGERIPPKPGRADDFTWPPPDPVGP 463          
BLAST of mRNA_P-wetherbeei_contig15564.2.1 vs. uniprot
Match: A0A2P5LWL7_9HYPH (Uncharacterized protein (Fragment) n=1 Tax=Methylocystis sp. TaxID=1911079 RepID=A0A2P5LWL7_9HYPH)

HSP 1 Score: 130 bits (327), Expect = 7.750e-34
Identity = 66/119 (55.46%), Postives = 86/119 (72.27%), Query Frame = 1
Query:   40 GDLRADNVRVSFRSAIAGGREEQVTIEIVRPAITQSVIQLVTRRDRGDKPSQVGDTLTDTLSNGLLVMRSITPSRGADRGQSRAAL--TQQPFFIALSKGERLPPKPGRADDFRWPRSD 390
            G+ +ADN +++ R+  A GREE V ++IVRPAI  SV+ LVTRR+  DKPSQ+G+TL D ++ GL VM S+TPS  + +G SR  +  TQ PFF  L KGERL PKPGRADD  WPR++
Sbjct:  212 GEQKADNGKINLRTLGASGREEIVQLDIVRPAIPASVVALVTRRESPDKPSQMGETLIDQIAGGLTVMSSVTPSGTSSQGGSRQRISPTQTPFFRVLVKGERLTPKPGRADDLGWPRTE 330          
BLAST of mRNA_P-wetherbeei_contig15564.2.1 vs. uniprot
Match: A0A2S5PBM4_HYPSQ (Uncharacterized protein n=2 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2S5PBM4_HYPSQ)

HSP 1 Score: 131 bits (330), Expect = 1.600e-33
Identity = 67/119 (56.30%), Postives = 85/119 (71.43%), Query Frame = 1
Query:   40 GDLRADNVRVSFRSAIAGGREEQVTIEIVRPAITQSVIQLVTRRDRGDKPSQVGDTLTDTLSNGLLVMRSITPSRGADRGQSRAAL--TQQPFFIALSKGERLPPKPGRADDFRWPRSD 390
            G+ +ADN R++ R+  A GREE V ++IVRPAI  SV+ LVTRR+  DKPSQ+G+TL D ++ GL VM S+TPS  + +G  R  +  TQ PFF  L KGERL PKPGRADD  WPR+D
Sbjct:  335 GEQKADNGRINLRTLGASGREEIVQLDIVRPAIPASVVALVTRRESPDKPSQMGETLIDQIAGGLTVMSSVTPSGTSSQGGGRQRISPTQTPFFRVLVKGERLTPKPGRADDLGWPRAD 453          
BLAST of mRNA_P-wetherbeei_contig15564.2.1 vs. uniprot
Match: A0A7C2QWD3_9HYPH (DUF459 domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C2QWD3_9HYPH)

HSP 1 Score: 129 bits (324), Expect = 5.870e-33
Identity = 64/125 (51.20%), Postives = 87/125 (69.60%), Query Frame = 1
Query:   13 GQASTAPQ-AGDLRADNVRVSFRSAIAGGREEQVTIEIVRPAITQSVIQLVTRRDRGDKPSQVGDTLTDTLSNGLLVMRSITPSRGADRGQSRAALTQQPFFIALSKGERLPPKPGRADDFRWPR 384
            GQ   AP+ + +L+ADN R++ RS    GREE VTI+++RPAI  +VI LVTR++  DKP+Q+GD L + +  GL+V  SITP+     G  RA+ +  P++  L KGERLPPKPGRADDF WP+
Sbjct:  296 GQQRGAPEGSNELKADNGRITLRSVSPSGREESVTIDLLRPAIPSAVIALVTRKESADKPTQMGDVLAEDVGGGLVVQSSITPAGAGAPGGRRASPSLAPYYQVLIKGERLPPKPGRADDFSWPK 420          
BLAST of mRNA_P-wetherbeei_contig15564.2.1 vs. uniprot
Match: A0A2W4MT21_9PROT (DUF459 domain-containing protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4MT21_9PROT)

HSP 1 Score: 127 bits (319), Expect = 3.430e-32
Identity = 61/116 (52.59%), Postives = 83/116 (71.55%), Query Frame = 1
Query:   40 GDLRADNVRVSFRSAIAGGREEQVTIEIVRPAITQSVIQLVTRRDRGDKPSQVGDTLTDTLSNGLLVMRSITPS--RGADRGQSRAALTQQPFFIALSKGERLPPKPGRADDFRWP 381
            G L+ADN ++  ++    G+EE+ TIEI+RPAI  SV+ ++ R+   D+P+Q+GDT+++TL  G+ VM SITP+   G+   + R A TQ PFF  L KGERLPPKPGRADDFRWP
Sbjct:  321 GALKADNSKIKLKTRGNSGKEEETTIEILRPAIPASVVAIIARQQSPDRPAQLGDTISETLPGGVTVMSSITPALTAGSQAQRRRLAPTQSPFFKVLVKGERLPPKPGRADDFRWP 436          
BLAST of mRNA_P-wetherbeei_contig15564.2.1 vs. uniprot
Match: A0A6I0EDM3_HYPSQ (DUF459 domain-containing protein n=3 Tax=Hyphomicrobium TaxID=81 RepID=A0A6I0EDM3_HYPSQ)

HSP 1 Score: 124 bits (311), Expect = 4.080e-31
Identity = 65/126 (51.59%), Postives = 81/126 (64.29%), Query Frame = 1
Query:    7 SPGQASTAPQAGDLRADNVRVSFRSAIAGGREEQVTIEIVRPAITQSVIQLVTRRDRGDKPSQVGDTLTDTLSNGLLVMRSITPSRGADRGQSRAALTQQPFFIALSKGERLPPKPGRADDFRWPR 384
            +P   ++A  A D + +  +V  R   A G E+ VT+EIVRPAI  SV+ LVTR+   DK +Q+GD L D +  GL VM SI P RGAD  + R + TQ P+F  L KGERLP KPGRADDF WPR
Sbjct:  290 APAANASADGAKDQKLETGKVDIRVLGAEGTEQIVTVEIVRPAIPASVVALVTRKQSNDKAAQMGDVLVDQIPGGLTVMSSIVPPRGADGTRRRLSPTQSPYFRVLEKGERLPSKPGRADDFTWPR 415          
BLAST of mRNA_P-wetherbeei_contig15564.2.1 vs. uniprot
Match: A0A537RSI9_9PROT (DUF459 domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537RSI9_9PROT)

HSP 1 Score: 123 bits (308), Expect = 1.930e-30
Identity = 59/117 (50.43%), Postives = 84/117 (71.79%), Query Frame = 1
Query:   43 DLRADNVRVSFRSAIAGGREEQVTIEIVRPAITQSVIQLVTRRDRGDKPSQVGDTLTDTLSNGLLVMRSITPSRGADRGQSRA-ALTQQPFFIALSKGERLPPKPGRADDFRWPRSD 390
            D +ADN R++ +S  AGGREE VT++I RPAI  +VI L+TR++  D+PSQ+GD + D + +GL+V+ SITP+     G +R  A +  P++  L KGERL PKPGRADDF WP+++
Sbjct:  349 DQKADNGRITLKSIGAGGREESVTVDIPRPAIPSAVIALMTRKESSDRPSQMGDVVADDVGDGLVVLSSITPAATTGSGPARRLAPSLSPYYQVLIKGERLSPKPGRADDFSWPKAE 465          
BLAST of mRNA_P-wetherbeei_contig15564.2.1 vs. uniprot
Match: A0A6N6T448_9HYPH (DUF459 domain-containing protein n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A6N6T448_9HYPH)

HSP 1 Score: 122 bits (306), Expect = 2.890e-30
Identity = 60/117 (51.28%), Postives = 83/117 (70.94%), Query Frame = 1
Query:   43 DLRADNVRVSFRSAIAGGREEQVTIEIVRPAITQSVIQLVTRRDRGDKPSQVGDTLTDTLSNGLLVMRSITPSR-GADRGQSRAALTQQPFFIALSKGERLPPKPGRADDFRWPRSD 390
            + +ADN R++ +S  A GREE VT++I+RPAI  +V+ LVTR++  D+PSQ+GD + + +  GL+VM SITPS  G   G  R A +Q P++  L KGER  PKPGRADDF WPR++
Sbjct:  327 EQKADNSRITLKSIGANGREEAVTLDILRPAIPSAVVALVTRKESTDRPSQIGDVVPNDVGGGLVVMSSITPSTTGPGGGVRRIAPSQTPYYQVLIKGERPTPKPGRADDFSWPRAE 443          
BLAST of mRNA_P-wetherbeei_contig15564.2.1 vs. uniprot
Match: UPI0019C875A0 (DUF459 domain-containing protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=UPI0019C875A0)

HSP 1 Score: 120 bits (302), Expect = 8.630e-30
Identity = 61/114 (53.51%), Postives = 75/114 (65.79%), Query Frame = 1
Query:   43 DLRADNVRVSFRSAIAGGREEQVTIEIVRPAITQSVIQLVTRRDRGDKPSQVGDTLTDTLSNGLLVMRSITPSRGADRGQSRAALTQQPFFIALSKGERLPPKPGRADDFRWPR 384
            D + +  +V  +   A G E+ VTIEIVRPAI  SV+ LVTR+   DK +Q+GD L D +  GL VM SI P RG+D  + R + TQ P+F  L KGERLP KPGRADDF WPR
Sbjct:  306 DQKLETGKVDIKVPGAEGTEQIVTIEIVRPAIPASVVALVTRKQSDDKAAQMGDVLVDQIPGGLTVMSSIVPPRGSDGSRRRMSPTQSPYFRVLEKGERLPSKPGRADDFIWPR 419          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15564.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4XMN7_9HYPH1.370e-3956.30DUF459 domain-containing protein n=1 Tax=Hyphomicr... [more]
A0A2W4R8Y6_9PROT2.790e-3553.97DUF459 domain-containing protein n=1 Tax=Proteobac... [more]
A0A2P5LWL7_9HYPH7.750e-3455.46Uncharacterized protein (Fragment) n=1 Tax=Methylo... [more]
A0A2S5PBM4_HYPSQ1.600e-3356.30Uncharacterized protein n=2 Tax=Hyphomicrobium sp.... [more]
A0A7C2QWD3_9HYPH5.870e-3351.20DUF459 domain-containing protein n=1 Tax=Hyphomicr... [more]
A0A2W4MT21_9PROT3.430e-3252.59DUF459 domain-containing protein n=1 Tax=Proteobac... [more]
A0A6I0EDM3_HYPSQ4.080e-3151.59DUF459 domain-containing protein n=3 Tax=Hyphomicr... [more]
A0A537RSI9_9PROT1.930e-3050.43DUF459 domain-containing protein n=1 Tax=Alphaprot... [more]
A0A6N6T448_9HYPH2.890e-3051.28DUF459 domain-containing protein n=1 Tax=Hyphomicr... [more]
UPI0019C875A08.630e-3053.51DUF459 domain-containing protein n=1 Tax=Hyphomicr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15564contigP-wetherbeei_contig15564:1060..1461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1267005.KB911256_gene1950
PFAMsDUF459
Model size402
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K09795
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.9e-30
EggNOG OGsCOG2845@1|root,COG2845@2|Bacteria,1R4X7@1224|Proteobacteria,2U5AU@28211|Alphaproteobacteria,3N771@45401|Hyphomicrobiaceae
DescriptionProtein of unknown function (DUF459)
Cds size402
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186060.1245859-CDS-P-wetherbeei_contig15564:1059..14611683186060.1245859-CDS-P-wetherbeei_contig15564:1059..1461Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15564 1060..1461 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15564.2.1prot_P-wetherbeei_contig15564.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15564 1060..1461 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15564.2.1

>prot_P-wetherbeei_contig15564.2.1 ID=prot_P-wetherbeei_contig15564.2.1|Name=mRNA_P-wetherbeei_contig15564.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=134bp
APSPGQASTAPQAGDLRADNVRVSFRSAIAGGREEQVTIEIVRPAITQSV
IQLVTRRDRGDKPSQVGDTLTDTLSNGLLVMRSITPSRGADRGQSRAALT
QQPFFIALSKGERLPPKPGRADDFRWPRSDDIPP
back to top

mRNA from alignment at P-wetherbeei_contig15564:1060..1461-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15564.2.1 ID=mRNA_P-wetherbeei_contig15564.2.1|Name=mRNA_P-wetherbeei_contig15564.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig15564:1060..1461- (Phaeothamnion wetherbeei SAG_119_79)
GCACCCTCGCCGGGTCAGGCGTCGACCGCCCCCCAGGCCGGCGATCTGCG CGCCGACAACGTCCGGGTTTCCTTCAGGTCTGCAATTGCGGGCGGACGCG AGGAGCAGGTGACGATCGAGATCGTCCGTCCCGCGATCACGCAGTCGGTG ATCCAACTCGTCACCCGCCGCGACCGCGGCGATAAGCCGAGCCAGGTCGG CGATACCTTGACCGATACGCTGTCGAACGGCCTGCTCGTAATGCGCTCGA TTACGCCCTCGCGCGGCGCCGATCGGGGCCAGTCGCGCGCCGCCCTGACC CAGCAGCCGTTCTTCATCGCGTTGTCGAAGGGCGAGCGCCTGCCGCCCAA GCCCGGCCGCGCCGACGATTTCCGCTGGCCGCGCAGCGACGATATTCCGC CC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig15564:1060..1461-

>mRNA_P-wetherbeei_contig15564.2.1 ID=mRNA_P-wetherbeei_contig15564.2.1|Name=mRNA_P-wetherbeei_contig15564.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig15564:1060..1461- (Phaeothamnion wetherbeei SAG_119_79)
GCACCCTCGCCGGGTCAGGCGTCGACCGCCCCCCAGGCCGGCGATCTGCG
CGCCGACAACGTCCGGGTTTCCTTCAGGTCTGCAATTGCGGGCGGACGCG
AGGAGCAGGTGACGATCGAGATCGTCCGTCCCGCGATCACGCAGTCGGTG
ATCCAACTCGTCACCCGCCGCGACCGCGGCGATAAGCCGAGCCAGGTCGG
CGATACCTTGACCGATACGCTGTCGAACGGCCTGCTCGTAATGCGCTCGA
TTACGCCCTCGCGCGGCGCCGATCGGGGCCAGTCGCGCGCCGCCCTGACC
CAGCAGCCGTTCTTCATCGCGTTGTCGAAGGGCGAGCGCCTGCCGCCCAA
GCCCGGCCGCGCCGACGATTTCCGCTGGCCGCGCAGCGACGATATTCCGC
CC
back to top