mRNA_P-wetherbeei_contig1555.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1555.1.2
Unique NamemRNA_P-wetherbeei_contig1555.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1555.1.2 vs. uniprot
Match: R9NYU0_PSEHS (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pseudozyma hubeiensis (strain SY62) TaxID=1305764 RepID=R9NYU0_PSEHS)

HSP 1 Score: 56.6 bits (135), Expect = 9.430e-5
Identity = 47/142 (33.10%), Postives = 66/142 (46.48%), Query Frame = 2 
Query:  179 FSSAMPPQATLFVCNISYETEGRDLEEDFLHYGR---CTFDIMLKGGG--RTAFVRYERREDAERAFRKMHNRYYHGRGLVIE-----------WAKDRVTGKVEPPPRGTSHGRSRERDRVVRGARRGGSQSRDRGYYGGG 556
            F+   PP+  LFVC ++  T   DLE  F  +G+   C      K G   + AFV ++R+EDAERA+ KM N     R + ++           W + R  G  E   RG    R +E++    G RRG SQ  D   +G G
Sbjct:  250 FAEIRPPENILFVCKLNPVTRSDDLELIFSRFGKILSCEVVKDKKTGDSLQYAFVEFDRKEDAERAYFKMQNVLVDDRRIWVDFSQSVRKLHGDWVRKRTGGGGEKEARGVDSYRPKEKE----GERRGSSQPDDARQWGNG 387
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1555.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R9NYU0_PSEHS9.430e-533.10Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pseudo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1555contigP-wetherbeei_contig1555:2..2425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog5888.CAK90689
PFAMsRRM_1
Model size1731
Max annot lvl5878|Ciliophora
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.15e-08
EggNOG OGs2E6UN@1|root,2SDHA@2759|Eukaryota,3ZCKR@5878|Ciliophora
DescriptionRNA recognition motif
Cds size993
COG categoryA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186059.654427-UTR-P-wetherbeei_contig1555:1..5491683186059.654427-UTR-P-wetherbeei_contig1555:1..549Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1555 2..549 -
1683186059.684888-UTR-P-wetherbeei_contig1555:2235..24251683186059.684888-UTR-P-wetherbeei_contig1555:2235..2425Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1555 2236..2425 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186059.6627507-CDS-P-wetherbeei_contig1555:549..12931683186059.6627507-CDS-P-wetherbeei_contig1555:549..1293Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1555 550..1293 -
1683186059.6701915-CDS-P-wetherbeei_contig1555:1436..16081683186059.6701915-CDS-P-wetherbeei_contig1555:1436..1608Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1555 1437..1608 -
1683186059.6775856-CDS-P-wetherbeei_contig1555:2158..22351683186059.6775856-CDS-P-wetherbeei_contig1555:2158..2235Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1555 2159..2235 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1555.1.2prot_P-wetherbeei_contig1555.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1555 550..2235 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1555.1.2

>prot_P-wetherbeei_contig1555.1.2 ID=prot_P-wetherbeei_contig1555.1.2|Name=mRNA_P-wetherbeei_contig1555.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=331bp
MPPQATLFVCNISYETEGRDLEEDFLHYGRCTFDIMLKGGGRTAFVRYER
REDAERAFRKMHNRYYHGRGLVIEWAKDRVTGKVEPPPRGTSHGRSRERD
RVVRGARRGGSQSRDRGYYGGGGGGRRDGSHSRDRGHGARRGKSRSRDRL
ASHSPSGGRGGRGSGGGGGDRRRGGRSPSPPSPSRRDERERGIRRRSCSR
SREGRRGRDKSPPPASLSPRRERKRRHRSPPSQSPSLSPSRTRNPGIGNG
AGNGNDAGRRAGRRRGSSPDSSDRGSGQDRAAAANGRGGSSSKKGDRAQA
TSPEEAGVGSEAGDGEPEEPRRNGRRSRGD*
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mRNA from alignment at P-wetherbeei_contig1555:2..2425-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1555.1.2 ID=mRNA_P-wetherbeei_contig1555.1.2|Name=mRNA_P-wetherbeei_contig1555.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2424bp|location=Sequence derived from alignment at P-wetherbeei_contig1555:2..2425- (Phaeothamnion wetherbeei SAG_119_79)
AGAAAGGAGGAGGCGCGGCGCGTCCTTTATCGCTGTCCTTCAAAACCTTC
CTACCTGACAATACCGCAACGCGCCTGCGTGGGCAGGAAGGTAGTACGTT
TTACTTTCGCCAAACGGCTCGTAAATAAGCGCCAAACGGCTCTCAAATAG
GGAGGGAGAGAACCCTCTCGTGACTGACTTCAGCTCAGCGATGCCACCTC
AAGCAACGCTCTTCGTTTGCAACATCTCCTACGAGACGGAGGGGAGAGAT
CTGGAAGAGGACTTCCTGTAAGTTCATTACCTTCCTTGTGCATCATCACT
TCTCTCTTTACGACTTCCGCTCTCACTTGCGTTTGCAATTCTTTGCGGCA
TTTGGTCCTTTGTATTCTCGCAGCGCGAGCTGAGGTTCCCTTTTTCATGG
CATTCCTTTAAAGCTGGAGTCCCTCCTCCGTGACGTTACCCCCTTCTCTA
TCCCAGCCGCTTTGCAACACTTCCTTTTCCTGCGTCGAGATGCATTCTTC
TCCTCGCCACGTCGTCCTGGCACAGAGAATCGCTCTATTCAGACTTTTCA
GAAGCTTTTATCCACTTGACTGGGCACTAGCTTCCTTACCCTTTTTTGAA
AAGGTCGCCTCCGCGTTTATAAACAGAGTCGAGTCTGGAATATCAAGCCG
TCTACATTCTTGCCTTCATTCTGTTGTTGGTCCCGCCTTTTGCTGTTCCG
GGCGGACTCCGTGCTTGCCGAGGCAATACGGATGCATCAGTGCCTTACAG
TGATCGTAAGCTGAAAACTAGCACCCCCACCCCCGGTTGCAACCTTTTTA
ACTTTGTTGTTTTTCAGTCATTATGGGCGCTGTACCTTCGACATCATGTT
GAAAGGAGGTGGAAGAACCGCATTTGTTCGTTACGAGAGACGGGAAGACG
CAGAGAGAGCCTTCCGCAAGATGCATAACCGCTATTACCACGGCCGCGGG
CTCGTCATCGAGTGGGCGAAGGATAGAGTGACGGGCAAGGTGAGTACCAA
AACTGTACCTTCGTGTGCCTTTCTTTATGGCTTCTTCGCCCGTCACGAGT
CCTTGAAGGGGGAAGGACAAACGGTCCTTGTTGTTCGCTTCAAACTCATG
TTCGAGGAACGCGTCTCTTCCGCACTATGCAGGTAGAACCGCCTCCGCGA
GGCACCAGCCACGGTCGGAGCCGCGAGAGGGACAGAGTGGTCCGCGGCGC
CCGGCGGGGCGGCTCCCAGAGCCGGGACCGGGGCTACTATGGCGGCGGCG
GCGGCGGACGACGAGACGGGTCGCACAGCCGCGACAGGGGCCATGGGGCC
AGGCGAGGCAAGTCTCGGAGCCGGGACCGCCTTGCTTCCCACTCGCCTTC
TGGTGGCCGCGGCGGTCGCGGCAGTGGCGGTGGCGGCGGCGACCGCCGCC
GCGGCGGCCGGTCGCCGTCGCCGCCATCGCCGTCGCGGCGGGATGAGCGA
GAGCGGGGCATCCGGCGCCGCTCATGCTCAAGGAGCCGGGAAGGGCGCCG
CGGCCGGGATAAGAGCCCGCCCCCGGCATCGCTGTCGCCACGGCGGGAGC
GGAAGCGGCGGCACCGGTCCCCACCCTCACAGTCCCCGTCCCTTTCGCCG
TCGAGGACCCGCAATCCTGGCATCGGCAACGGCGCCGGGAATGGCAACGA
CGCCGGTCGGAGGGCCGGGCGCCGGCGTGGTTCATCCCCCGACAGTTCCG
ATAGAGGCTCGGGCCAGGATCGCGCCGCTGCTGCCAACGGCAGAGGCGGC
AGCAGTTCGAAGAAGGGGGACCGCGCACAGGCGACGTCACCCGAAGAGGC
TGGCGTGGGCTCGGAGGCGGGCGACGGGGAGCCGGAGGAGCCGCGCCGCA
ACGGCAGGAGAAGCAGGGGTGACTGAGCTCAGGATGTCGCGGTTCCAATT
GTGGCGGCGGCGGCGGCGACGGCAAAGGCGATGCGGCCGCCGCTCCTCTT
TTCGACCCGGTTTTAGTCGCCCGGAATTGATGGTGGCCGCAAGCGTGCCG
TCCTTATCGCCTGCCGGGCAACCGCGAACTTGACCTCACGAGCGGCACTG
CTGCATGAGATGCGGTGGCTTTGTACCGTGGCTCGATGCCGGCGCCGTTT
CGTTAAAGAACACTGAGCCATTTAGGAAGATCATTCCTGGAGCGTGCTTG
CGCTGGCGCGGCCGCGGCTGCCGCCGTTGCTGTGCCACCGGAGGCCGGAT
TCACCATGTCGTGGTGCGGCCTTTTGCTGGCGCGAAGTGATGTGGGCGTA
CAGGCTGGCAGACGGTTGTTCTGTGCAGCGACAGGGCGGCGGGGCGGCCG
TTGGGAAATTGTGCGCTAAGGAATATGACACAGTGGGGAAACAGCGAACT
GGCAGAGGATCCAAGGACCGGCAAAAAGCAGAGCGTAGTGTACGACTCAA
AAAATCAGACAGGCAGCAGCAGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1555:2..2425-

>mRNA_P-wetherbeei_contig1555.1.2 ID=mRNA_P-wetherbeei_contig1555.1.2|Name=mRNA_P-wetherbeei_contig1555.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=993bp|location=Sequence derived from alignment at P-wetherbeei_contig1555:2..2425- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCACCTCAAGCAACGCTCTTCGTTTGCAACATCTCCTACGAGACGGA
GGGGAGAGATCTGGAAGAGGACTTCCTTCATTATGGGCGCTGTACCTTCG
ACATCATGTTGAAAGGAGGTGGAAGAACCGCATTTGTTCGTTACGAGAGA
CGGGAAGACGCAGAGAGAGCCTTCCGCAAGATGCATAACCGCTATTACCA
CGGCCGCGGGCTCGTCATCGAGTGGGCGAAGGATAGAGTGACGGGCAAGG
TAGAACCGCCTCCGCGAGGCACCAGCCACGGTCGGAGCCGCGAGAGGGAC
AGAGTGGTCCGCGGCGCCCGGCGGGGCGGCTCCCAGAGCCGGGACCGGGG
CTACTATGGCGGCGGCGGCGGCGGACGACGAGACGGGTCGCACAGCCGCG
ACAGGGGCCATGGGGCCAGGCGAGGCAAGTCTCGGAGCCGGGACCGCCTT
GCTTCCCACTCGCCTTCTGGTGGCCGCGGCGGTCGCGGCAGTGGCGGTGG
CGGCGGCGACCGCCGCCGCGGCGGCCGGTCGCCGTCGCCGCCATCGCCGT
CGCGGCGGGATGAGCGAGAGCGGGGCATCCGGCGCCGCTCATGCTCAAGG
AGCCGGGAAGGGCGCCGCGGCCGGGATAAGAGCCCGCCCCCGGCATCGCT
GTCGCCACGGCGGGAGCGGAAGCGGCGGCACCGGTCCCCACCCTCACAGT
CCCCGTCCCTTTCGCCGTCGAGGACCCGCAATCCTGGCATCGGCAACGGC
GCCGGGAATGGCAACGACGCCGGTCGGAGGGCCGGGCGCCGGCGTGGTTC
ATCCCCCGACAGTTCCGATAGAGGCTCGGGCCAGGATCGCGCCGCTGCTG
CCAACGGCAGAGGCGGCAGCAGTTCGAAGAAGGGGGACCGCGCACAGGCG
ACGTCACCCGAAGAGGCTGGCGTGGGCTCGGAGGCGGGCGACGGGGAGCC
GGAGGAGCCGCGCCGCAACGGCAGGAGAAGCAGGGGTGACTGA
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