prot_P-wetherbeei_contig1555.1.2 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig1555.1.2
Unique Nameprot_P-wetherbeei_contig1555.1.2
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length331
Homology
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BLAST of mRNA_P-wetherbeei_contig1555.1.2 vs. uniprot
Match: R9NYU0_PSEHS (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pseudozyma hubeiensis (strain SY62) TaxID=1305764 RepID=R9NYU0_PSEHS)

HSP 1 Score: 55.8 bits (133), Expect = 5.490e-5
Identity = 46/137 (33.58%), Postives = 64/137 (46.72%), Query Frame = 0 
Query:    2 PPQATLFVCNISYETEGRDLEEDFLHYGR---CTFDIMLKGGG--RTAFVRYERREDAERAFRKMHNRYYHGRGLVIE-----------WAKDRVTGKVEPPPRGTSHGRSRERDRVVRGARRGGSQSRDRGYYGGG 122
            PP+  LFVC ++  T   DLE  F  +G+   C      K G   + AFV ++R+EDAERA+ KM N     R + ++           W + R  G  E   RG    R +E++    G RRG SQ  D   +G G
Sbjct:  255 PPENILFVCKLNPVTRSDDLELIFSRFGKILSCEVVKDKKTGDSLQYAFVEFDRKEDAERAYFKMQNVLVDDRRIWVDFSQSVRKLHGDWVRKRTGGGGEKEARGVDSYRPKEKE----GERRGSSQPDDARQWGNG 387
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1555.1.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R9NYU0_PSEHS5.490e-533.58Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pseudo... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 6..74
e-value: 7.1E-11
score: 52.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 7..69
e-value: 3.3E-8
score: 33.2
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 5..78
score: 11.826953
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 2..100
e-value: 2.0E-16
score: 61.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 182..219
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..330
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..111
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 231..249
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 314..330
NoneNo IPR availableCDDcd00590RRM_SFcoord: 7..74
e-value: 1.04529E-11
score: 57.7001
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 2..77

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1555contigP-wetherbeei_contig1555:550..2235 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1555.1.2mRNA_P-wetherbeei_contig1555.1.2Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig1555 2..2425 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig1555.1.2 ID=prot_P-wetherbeei_contig1555.1.2|Name=mRNA_P-wetherbeei_contig1555.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=331bp
MPPQATLFVCNISYETEGRDLEEDFLHYGRCTFDIMLKGGGRTAFVRYER
REDAERAFRKMHNRYYHGRGLVIEWAKDRVTGKVEPPPRGTSHGRSRERD
RVVRGARRGGSQSRDRGYYGGGGGGRRDGSHSRDRGHGARRGKSRSRDRL
ASHSPSGGRGGRGSGGGGGDRRRGGRSPSPPSPSRRDERERGIRRRSCSR
SREGRRGRDKSPPPASLSPRRERKRRHRSPPSQSPSLSPSRTRNPGIGNG
AGNGNDAGRRAGRRRGSSPDSSDRGSGQDRAAAANGRGGSSSKKGDRAQA
TSPEEAGVGSEAGDGEPEEPRRNGRRSRGD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf