mRNA_P-wetherbeei_contig15535.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15535.1.1
Unique NamemRNA_P-wetherbeei_contig15535.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15535.1.1 vs. uniprot
Match: A0A2D9JNB1_9GAMM (Ferredoxin n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2D9JNB1_9GAMM)

HSP 1 Score: 162 bits (409), Expect = 8.330e-50
Identity = 74/104 (71.15%), Postives = 86/104 (82.69%), Query Frame = 1
Query:    1 MGTVYATDRDGELHTLPARRGVTLMEILRDANLPVEAICGGQCICSTCHIYVDAAWVARLKPRGEAEQVMVEDTGHFLDTSRLACQVDYEDSLDGLQLTLAPEF 312
            M TVYATDRDG  HT+ A  G TLME+LRDA LPVEAICGGQ ICSTCHIYVD AW  +L PR + EQVM ED+G+F + SRLACQVD+++SLDG+QLTLAPE+
Sbjct:    1 MATVYATDRDGAGHTIDAAPGATLMEVLRDAGLPVEAICGGQAICSTCHIYVDDAWAGKLDPRSDTEQVMCEDSGYFQENSRLACQVDFDESLDGIQLTLAPEY 104          
BLAST of mRNA_P-wetherbeei_contig15535.1.1 vs. uniprot
Match: A0A523P2Q2_9PROT (2Fe-2S iron-sulfur cluster binding domain-containing protein n=2 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523P2Q2_9PROT)

HSP 1 Score: 138 bits (348), Expect = 1.650e-40
Identity = 60/104 (57.69%), Postives = 82/104 (78.85%), Query Frame = 1
Query:    1 MGTVYATDRDGELHTLPARRGVTLMEILRDANLPVEAICGGQCICSTCHIYVDAAWVARLKPRGEAEQVMVEDTGHFLDTSRLACQVDYEDSLDGLQLTLAPEF 312
            MGT+ A DR+GE H + A  G+++MEILR+A L +EAICGGQCICSTCH+Y+D  W A L  R ++E+++VED+G + + SRL+CQ+DY D LDGL+L LAPE+
Sbjct:    1 MGTITAIDREGESHEIDAEPGLSVMEILRNAGLEIEAICGGQCICSTCHVYIDPRWQAGLPARRDSERILVEDSGAYQENSRLSCQLDYTDELDGLKLILAPEY 104          
BLAST of mRNA_P-wetherbeei_contig15535.1.1 vs. uniprot
Match: A0A1Z9UM83_9GAMM (Ferredoxin n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1Z9UM83_9GAMM)

HSP 1 Score: 136 bits (342), Expect = 1.350e-39
Identity = 60/104 (57.69%), Postives = 77/104 (74.04%), Query Frame = 1
Query:    1 MGTVYATDRDGELHTLPARRGVTLMEILRDANLPVEAICGGQCICSTCHIYVDAAWVARLKPRGEAEQVMVEDTGHFLDTSRLACQVDYEDSLDGLQLTLAPEF 312
            MGT Y TDRDG  H + A+ G  LMEILRD  LP+E ICGG C+CSTCH+Y+   W+ +   R + EQVMVED+G + DTSRLACQ+++   L+G++LTLAPEF
Sbjct:    1 MGTXYVTDRDGLEHEIAAQEGENLMEILRDGGLPIEGICGGVCVCSTCHVYMAKDWITKSGIRDDEEQVMVEDSGSYQDTSRLACQIEFTPVLEGMRLTLAPEF 104          
BLAST of mRNA_P-wetherbeei_contig15535.1.1 vs. uniprot
Match: A0A6I7P4T1_9PROT (Ferredoxin n=1 Tax=Geminicoccaceae bacterium TaxID=2448052 RepID=A0A6I7P4T1_9PROT)

HSP 1 Score: 125 bits (315), Expect = 1.750e-35
Identity = 54/104 (51.92%), Postives = 77/104 (74.04%), Query Frame = 1
Query:    1 MGTVYATDRDGELHTLPARRGVTLMEILRDANLPVEAICGGQCICSTCHIYVDAAWVARLKPRGEAEQVMVEDTGHFLDTSRLACQVDYEDSLDGLQLTLAPEF 312
            M  +  TDR+G++H +  R G ++MEI+RDA+LP+EA CGG C C+TCH+YVD AW A+L P G+ E++M+++       SRL+CQ+ + D LDGLQ+TLAPEF
Sbjct:    1 MSKLIVTDREGKVHEIEGRAGWSVMEIIRDADLPIEAACGGCCACATCHVYVDEAWQAKLSPVGDEEELMLDEAFEPQPNSRLSCQLKWSDELDGLQVTLAPEF 104          
BLAST of mRNA_P-wetherbeei_contig15535.1.1 vs. uniprot
Match: A0A212RBT2_9PROT (Ferredoxin, 2Fe-2S n=1 Tax=Arboricoccus pini TaxID=1963835 RepID=A0A212RBT2_9PROT)

HSP 1 Score: 122 bits (306), Expect = 4.100e-34
Identity = 56/104 (53.85%), Postives = 74/104 (71.15%), Query Frame = 1
Query:    1 MGTVYATDRDGELHTLPARRGVTLMEILRDANLPVEAICGGQCICSTCHIYVDAAWVARLKPRGEAEQVMVEDTGHFLDTSRLACQVDYEDSLDGLQLTLAPEF 312
            M  V  TDR+G  H L  + G +LMEI+R+ANLP+EA CGG C C+TCH+YVDAAWV +L      E +M+++     D SRL+CQV + D+LDGL++TLAPEF
Sbjct:    1 MAKVIVTDREGADHELNGQSGWSLMEIIREANLPIEAACGGCCACATCHVYVDAAWVDKLAAPESDESMMLDEAFQVQDNSRLSCQVKFTDALDGLKVTLAPEF 104          
BLAST of mRNA_P-wetherbeei_contig15535.1.1 vs. uniprot
Match: UPI001CA9AD40 (2Fe-2S iron-sulfur cluster-binding protein n=1 Tax=Ruegeria sp. SCSIO 43209 TaxID=2793010 RepID=UPI001CA9AD40)

HSP 1 Score: 122 bits (305), Expect = 5.650e-34
Identity = 51/103 (49.51%), Postives = 75/103 (72.82%), Query Frame = 1
Query:    1 MGTVYATDRDGELHTLPARRGVTLMEILRDANLPVEAICGGQCICSTCHIYVDAAWVARLKPRGEAEQVMVEDTGHFLDTSRLACQVDYEDSLDGLQLTLAPE 309
            M  ++  DRDG  HTL AR G+ +MEI+RDA LP+EA CGG C C+TCH+YV   W+ARL P+ + E  +++      +TSRL+CQ++++++LDGL++ LAPE
Sbjct:    1 MSVIHVKDRDGSEHTLEARPGLKIMEIIRDAGLPIEAACGGSCACATCHVYVAPGWIARLDPQDDMEVDLLDLADAVTETSRLSCQIEFDETLDGLKVELAPE 103          
BLAST of mRNA_P-wetherbeei_contig15535.1.1 vs. uniprot
Match: A0A2S6SX14_9PROT (Ferredoxin CarAc n=3 Tax=root TaxID=1 RepID=A0A2S6SX14_9PROT)

HSP 1 Score: 120 bits (302), Expect = 1.620e-33
Identity = 50/103 (48.54%), Postives = 71/103 (68.93%), Query Frame = 1
Query:    1 MGTVYATDRDGELHTLPARRGVTLMEILRDANLPVEAICGGQCICSTCHIYVDAAWVARLKPRGEAEQVMVEDTGHFLDTSRLACQVDYEDSLDGLQLTLAPE 309
            MGT+   DRD  +H L A  G T+ME++RDA L +EA CGG C C+TCH+Y+   W+ +L PR + E+ M++   +  D SRL CQ++Y + LDG++LTLAPE
Sbjct:    1 MGTIKVKDRDDNVHQLTAESGFTIMEVIRDAGLDIEAACGGCCACATCHVYIGEEWLKKLNPRDDDEESMLDQAFYVTDNSRLGCQLEYTEELDGMELTLAPE 103          
BLAST of mRNA_P-wetherbeei_contig15535.1.1 vs. uniprot
Match: A0A2H6AUB2_9BACT (Ferredoxin-6 n=1 Tax=bacterium HR39 TaxID=2035434 RepID=A0A2H6AUB2_9BACT)

HSP 1 Score: 119 bits (298), Expect = 6.970e-33
Identity = 54/101 (53.47%), Postives = 70/101 (69.31%), Query Frame = 1
Query:   10 VYATDRDGELHTLPARRGVTLMEILRDANLPVEAICGGQCICSTCHIYVDAAWVARLKPRGEAEQVMVEDTGHFLDTSRLACQVDYEDSLDGLQLTLAPEF 312
            VY TDR+G LH L A  G TLME++R+A LP+EA CGG C C+TCH+YVD  W A+L    E E  M+++     +TSRLACQ+    SL G+++TLAPEF
Sbjct:    5 VYVTDREGVLHELEAEPGWTLMEVIREAGLPIEAACGGCCACATCHVYVDLEWFAKLPEPSEDENAMLDEAFEVRETSRLACQIRLGPSLSGIRVTLAPEF 105          
BLAST of mRNA_P-wetherbeei_contig15535.1.1 vs. uniprot
Match: A8TNJ6_9PROT (Ferredoxin n=1 Tax=alpha proteobacterium BAL199 TaxID=331869 RepID=A8TNJ6_9PROT)

HSP 1 Score: 119 bits (297), Expect = 9.060e-33
Identity = 55/100 (55.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:   10 VYATDRDGELHTLPARRGVTLMEILRDANLPVEAICGGQCICSTCHIYVDAAWVARLKPRGEAEQVMVEDTGHFLDTSRLACQVDYEDSLDGLQLTLAPE 309
            ++ TDRDG  H L A  G  +ME++RDA LP+ A CGG C C+TCH+YVD AWV RL+PRGE E  M++      D SRL+CQV     LDGL++TLAPE
Sbjct:    3 IHVTDRDGGEHELEATNGWRVMEVIRDAGLPITAECGGACACATCHVYVDPAWVDRLEPRGEEENDMLDLAFEVQDNSRLSCQVTVTPELDGLKVTLAPE 102          
BLAST of mRNA_P-wetherbeei_contig15535.1.1 vs. uniprot
Match: A0A2H6B0I4_9BACT (Ferredoxin-6 n=1 Tax=bacterium HR40 TaxID=2035435 RepID=A0A2H6B0I4_9BACT)

HSP 1 Score: 118 bits (296), Expect = 1.360e-32
Identity = 53/104 (50.96%), Postives = 71/104 (68.27%), Query Frame = 1
Query:    1 MGTVYATDRDGELHTLPARRGVTLMEILRDANLPVEAICGGQCICSTCHIYVDAAWVARLKPRGEAEQVMVEDTGHFLDTSRLACQVDYEDSLDGLQLTLAPEF 312
            M  VY  DR+G  H L  + G +LMEI+R+A LP+EA CGG C C+TCH+YVDA W+ RL+  GE E  M++      +TSRLACQ+ +   L G+++TLAPEF
Sbjct:    1 MPKVYVVDREGVEHELEGQPGWSLMEIIREAGLPIEAACGGCCACATCHVYVDAEWLGRLEEPGEEENAMLDSAFEVRETSRLACQIRFRPELAGIRVTLAPEF 104          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15535.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D9JNB1_9GAMM8.330e-5071.15Ferredoxin n=1 Tax=Gammaproteobacteria bacterium T... [more]
A0A523P2Q2_9PROT1.650e-4057.692Fe-2S iron-sulfur cluster binding domain-containi... [more]
A0A1Z9UM83_9GAMM1.350e-3957.69Ferredoxin n=3 Tax=Gammaproteobacteria TaxID=1236 ... [more]
A0A6I7P4T1_9PROT1.750e-3551.92Ferredoxin n=1 Tax=Geminicoccaceae bacterium TaxID... [more]
A0A212RBT2_9PROT4.100e-3453.85Ferredoxin, 2Fe-2S n=1 Tax=Arboricoccus pini TaxID... [more]
UPI001CA9AD405.650e-3449.512Fe-2S iron-sulfur cluster-binding protein n=1 Tax... [more]
A0A2S6SX14_9PROT1.620e-3348.54Ferredoxin CarAc n=3 Tax=root TaxID=1 RepID=A0A2S6... [more]
A0A2H6AUB2_9BACT6.970e-3353.47Ferredoxin-6 n=1 Tax=bacterium HR39 TaxID=2035434 ... [more]
A8TNJ6_9PROT9.060e-3355.00Ferredoxin n=1 Tax=alpha proteobacterium BAL199 Ta... [more]
A0A2H6B0I4_9BACT1.360e-3250.96Ferredoxin-6 n=1 Tax=bacterium HR40 TaxID=2035435 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15535contigP-wetherbeei_contig15535:1111..1425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog331869.BAL199_12021
Preferred namefdx
PFAMsFer2
Model size315
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K04755
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.49e-33
EggNOG OGsCOG0633@1|root,COG0633@2|Bacteria,1N261@1224|Proteobacteria,2UC7B@28211|Alphaproteobacteria,4BQVH@82117|unclassified Alphaproteobacteria
Description2Fe-2S iron-sulfur cluster binding domain
Cds size315
COG categoryC
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186059.1310704-CDS-P-wetherbeei_contig15535:1110..14251683186059.1310704-CDS-P-wetherbeei_contig15535:1110..1425Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15535 1111..1425 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15535.1.1prot_P-wetherbeei_contig15535.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15535 1111..1425 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15535.1.1

>prot_P-wetherbeei_contig15535.1.1 ID=prot_P-wetherbeei_contig15535.1.1|Name=mRNA_P-wetherbeei_contig15535.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=105bp
MGTVYATDRDGELHTLPARRGVTLMEILRDANLPVEAICGGQCICSTCHI
YVDAAWVARLKPRGEAEQVMVEDTGHFLDTSRLACQVDYEDSLDGLQLTL
APEF*
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mRNA from alignment at P-wetherbeei_contig15535:1111..1425+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15535.1.1 ID=mRNA_P-wetherbeei_contig15535.1.1|Name=mRNA_P-wetherbeei_contig15535.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=315bp|location=Sequence derived from alignment at P-wetherbeei_contig15535:1111..1425+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCACTGTTTACGCTACTGATCGCGACGGCGAGCTGCATACGCTGCC CGCCCGTCGCGGTGTCACTCTGATGGAAATCCTGCGCGACGCGAATCTGC CGGTAGAGGCGATTTGCGGCGGGCAGTGCATCTGTTCAACCTGTCATATC TATGTCGACGCGGCCTGGGTCGCGCGTCTCAAGCCGCGCGGCGAGGCCGA GCAAGTGATGGTCGAAGATACCGGCCATTTCCTGGATACCTCGCGCCTGG CCTGCCAGGTCGACTACGAAGACAGCCTCGACGGCCTGCAATTGACGCTC GCGCCCGAATTCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15535:1111..1425+

>mRNA_P-wetherbeei_contig15535.1.1 ID=mRNA_P-wetherbeei_contig15535.1.1|Name=mRNA_P-wetherbeei_contig15535.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=315bp|location=Sequence derived from alignment at P-wetherbeei_contig15535:1111..1425+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCACTGTTTACGCTACTGATCGCGACGGCGAGCTGCATACGCTGCC
CGCCCGTCGCGGTGTCACTCTGATGGAAATCCTGCGCGACGCGAATCTGC
CGGTAGAGGCGATTTGCGGCGGGCAGTGCATCTGTTCAACCTGTCATATC
TATGTCGACGCGGCCTGGGTCGCGCGTCTCAAGCCGCGCGGCGAGGCCGA
GCAAGTGATGGTCGAAGATACCGGCCATTTCCTGGATACCTCGCGCCTGG
CCTGCCAGGTCGACTACGAAGACAGCCTCGACGGCCTGCAATTGACGCTC
GCGCCCGAATTCTGA
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