mRNA_P-wetherbeei_contig15476.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15476.1.1
Unique NamemRNA_P-wetherbeei_contig15476.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15476.1.1 vs. uniprot
Match: A0A257LD01_9BACT (GH16 domain-containing protein n=1 Tax=Bacteroidetes bacterium B1(2017) TaxID=2015582 RepID=A0A257LD01_9BACT)

HSP 1 Score: 112 bits (280), Expect = 9.160e-25
Identity = 57/153 (37.25%), Postives = 83/153 (54.25%), Query Frame = 1
Query:    1 FDGTELDASIWEHQLGDGCPDLCRWGTGQLQSFAKENALVADDQFRIEARSDKAADSPKCTSARVRTLGKRDFMSGMISARISFPSDDGMWPIFQLLPSDPDASGYGSWAARYGSVDMFETRNNGEIVRY-MLHFGGAYPNQQNSNQPSTVPN 456
            F+GT LD + WE+QLGDGCP+LC WG G+ Q + K   +V +   +I+A+ +    S   +SAR+RT+ K DF SG I  R   P   G WP    LP++   + YG W    G +DM E +       Y  +H+G   PN + +    T+P+
Sbjct:   31 FNGTNLDTTFWEYQLGDGCPNLCGWGNGESQYYQKSAVVVENGLLKIKAKKETIGTS-FYSSARIRTINKMDFASGRIEVRARMPIGRGYWPAVWFLPTE---NYYGIWPLS-GEIDMLEAKGQEPTNTYGTIHYGARTPNNKYTGTTYTLPS 178          
BLAST of mRNA_P-wetherbeei_contig15476.1.1 vs. uniprot
Match: A0A7Y2CJG4_9BACT (Family 16 glycosylhydrolase n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7Y2CJG4_9BACT)

HSP 1 Score: 106 bits (264), Expect = 1.410e-22
Identity = 57/140 (40.71%), Postives = 77/140 (55.00%), Query Frame = 1
Query:    1 FDGTELDASIWEHQLGDGCPDLCRWGTGQLQSFAKENALVADDQFRIEARSDKAADSPKCTSARVRTLGKRDFMSGMISARISFPSDDGMWPIFQLLPSDPDASGYGSWAARYGSVDMFETRNNGEI-VRYMLHFGGAYP 417
            FDGT LD + WE ++GDGCP LC WG  +L+ +  ENA VA     I A+ +    +   TSAR+RTL + D+  G    R   P   G+WP F +LP+D   S YG+WAA  G +D+ E   +    V   LH+G   P
Sbjct:   31 FDGTRLDLTKWEPEIGDGCPTLCGWGNNELEYYRAENATVAGGFLTITAKQE-IFGNRLYTSARLRTLNQGDWERGRFEMRAKMPIGQGLWPAFWMLPTD---SVYGTWAAS-GEIDIMEYLGHKPFEVLGTLHYGDTAP 165          
BLAST of mRNA_P-wetherbeei_contig15476.1.1 vs. uniprot
Match: A0A7W1FYR0_9BACT (Family 16 glycosylhydrolase n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7W1FYR0_9BACT)

HSP 1 Score: 103 bits (258), Expect = 5.470e-22
Identity = 57/149 (38.26%), Postives = 75/149 (50.34%), Query Frame = 1
Query:    1 FDGTELDASIWEHQLGDGCPDLCRWGTGQLQSF--AKENALVADDQFRIEARSDKAADSPKCTSARVRTLGKRDFMSGMISARISFPSDDGMWPIFQLLPSDPDASGYGSWAARYGSVDMFETRNNGE-IVRYMLHFGGAYPNQQNSNQ 438
            F GT LD   W  Q GDGCP LC WG  +LQ +  +  N  + +    IEAR +    S K TS ++ TLGK     G   A I  P   G+WP F +LP + D      W  + G +D+ E R +   I    LH+G A+PN QN +Q
Sbjct:    3 FQGTTLDLKKWAFQTGDGCPSLCGWGNSELQYYTNSNNNIKIQNGNLIIEARQENQGSS-KFTSGKIFTLGKFSQTYGRFEASIRLPKGRGLWPAFWMLPDNND------WP-KTGEIDIMENRGDRPTITNGTLHYGSAWPNNQNDSQ 143          
BLAST of mRNA_P-wetherbeei_contig15476.1.1 vs. uniprot
Match: A0A2E4P871_FLASP (Laminarinase n=2 Tax=Flavobacterium TaxID=237 RepID=A0A2E4P871_FLASP)

HSP 1 Score: 99.4 bits (246), Expect = 1.630e-21
Identity = 51/147 (34.69%), Postives = 81/147 (55.10%), Query Frame = 1
Query:    1 FDGTELDASIWEHQLGDGCPDLCRWGTGQLQSFAKENALVADDQFRIEARSDKAADSPKCTSARVRTLGKRDFMSGMISARISFPSDDGMWPIFQLLPSDPDASGYGSWAARYGSVDMFE-TRNNGEIVRYMLHFGGAYPNQQNSNQ 438
            FDG +LD S+W ++LGDGCP++C WG  + Q + ++N  VA+    I+   +K  DS   TS R+ T GK++F  G I AR   P+  G+WP F +L S+    G+     + G +D+ E      ++V   LH   ++ N  N+ +
Sbjct:   31 FDGNKLDESVWNYELGDGCPNICGWGNNERQIYTRDNHTVANGMLTIKV--EKEGDS--YTSTRITTAGKKEFKYGYIEARAKIPTGHGIWPAFWMLGSNIKQVGW----PKAGEIDILEYVGKEPDMVFTSLHTQASHGNTINTKK 169          
BLAST of mRNA_P-wetherbeei_contig15476.1.1 vs. uniprot
Match: UPI001E459D63 (glycoside hydrolase family 16 protein n=1 Tax=Paraneptunicella aestuarii TaxID=2831148 RepID=UPI001E459D63)

HSP 1 Score: 102 bits (254), Expect = 2.270e-21
Identity = 54/145 (37.24%), Postives = 82/145 (56.55%), Query Frame = 1
Query:    1 FDGTELDASIWEHQLGDGCP-DLCRWGTGQLQSFAKENALVADDQFRIEARSDKAADSPKCTSARVRTLGKRD---FMSGMISARISFPSDDGMWPIFQLLPSDPDASGYGSWAARYGSVDMFETRNNGEIVRY-MLHFGGAYPN 420
            F+GT+LD + WE Q+GDGC   LC WG  +LQ +  +NA V++    I A+ ++   S   TSAR+RT    +   + +G   ARI  P+  G+WP F +LP+DPD      W    G +D+ E+     ++ +  +HFG A+PN
Sbjct:   41 FNGTQLDTTKWEAQIGDGCDIGLCGWGNNELQWYKAQNATVSNGVLSITAKKERVR-SKGYTSARLRTANMPNGGQWTNGRFEARIKIPAGQGLWPAFWMLPTDPDQG----WPMS-GEIDIMESTGQASMLAHGTIHFGEAWPN 179          
BLAST of mRNA_P-wetherbeei_contig15476.1.1 vs. uniprot
Match: A0A6I4NQZ4_9FLAO (Family 16 glycosylhydrolase n=1 Tax=Flavobacterium hydrocarbonoxydans TaxID=2683249 RepID=A0A6I4NQZ4_9FLAO)

HSP 1 Score: 98.6 bits (244), Expect = 3.000e-21
Identity = 50/147 (34.01%), Postives = 80/147 (54.42%), Query Frame = 1
Query:    1 FDGTELDASIWEHQLGDGCPDLCRWGTGQLQSFAKENALVADDQFRIEARSDKAADSPKCTSARVRTLGKRDFMSGMISARISFPSDDGMWPIFQLLPSDPDASGYGSWAARYGSVDMFE-TRNNGEIVRYMLHFGGAYPNQQNSNQ 438
            FD  +++ S+W ++LGDGCP+LC WG  + Q + K+N  + D  F IEA+ D      K TS ++ T GK++F+ G I AR   P   G+WP F +L ++ D      W  + G +D+ E    +  +V   LH   ++ N  N+ +
Sbjct:   29 FDEKKINESVWNYELGDGCPNLCGWGNNERQLYTKDNHEIKDGNFIIEAKKD----GNKYTSTKITTKGKKEFLYGRIEARAKLPVGHGLWPAFWMLGANIDEV---KWP-KTGEIDILEYIGRDPHMVYTTLHTQDSHGNTINTKK 167          
BLAST of mRNA_P-wetherbeei_contig15476.1.1 vs. uniprot
Match: A0A4R5H9C2_9ALTE (Glycoside hydrolase family 16 protein n=1 Tax=Alteromonadaceae bacterium M269 TaxID=2546219 RepID=A0A4R5H9C2_9ALTE)

HSP 1 Score: 102 bits (253), Expect = 4.670e-21
Identity = 62/150 (41.33%), Postives = 80/150 (53.33%), Query Frame = 1
Query:    1 FDGTELDASIWEHQLGDGCPDLCR--WGTGQLQSFAKENALVADDQFRIEARSDKAADSP----KCTSARVRTLGKRDFMSGMISARISFPSDDGMWPIFQLLPSDPDASGYGSWAARYGSVDMFET-RNNGEIVRYMLHFGGAYPNQQN 429
            FDGTELD S WE Q+GDG  +     WG  +LQ + ++N  V D    IEAR     DSP      TS R+RT G  DF  G I A I  P   G+W  F +L SDP  S +G+WAAR G +D+ E+     +  +   HFG  +P  +N
Sbjct:   53 FDGTELDRSRWEIQIGDGTSEGLPPGWGNNELQYYTEDNITVEDGNLVIEAR---VGDSPDPNFNFTSGRIRTQGLFDFTYGRIEASIQVPEGLGLWAAFWMLGSDP--SPFGAWAAR-GEIDIMESFGQETQFAQGTAHFGMVFPLNEN 196          
BLAST of mRNA_P-wetherbeei_contig15476.1.1 vs. uniprot
Match: A0A2E2ESX3_9FLAO (Laminarinase n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A2E2ESX3_9FLAO)

HSP 1 Score: 95.5 bits (236), Expect = 4.490e-20
Identity = 50/145 (34.48%), Postives = 71/145 (48.97%), Query Frame = 1
Query:    1 FDGTELDASIWEHQLGDGCPDLCRWGTGQLQSFAKENALVADDQFRIEARSDKAADSPKCTSARVRTLGKRDFMSGMISARISFPSDDGMWPIFQLLPSDPDASGYGSWAARYGSVDMFE-TRNNGEIVRYMLHFGGAYPNQQNS 432
            F GT L+ SIW ++LGDGCP+LC WG  + Q + KEN  V D    I A  D    S    S R+ T  K +F  G I A++  P   G+WP F +L S+    G+     + G +D+ E        +   LH   +Y   +N+
Sbjct:   30 FSGTSLNTSIWNYELGDGCPNLCGWGNNERQVYTKENVQVKDGSLIITATKD----STSYFSGRITTKNKFEFQYGTIEAKMKLPEGSGLWPAFWMLGSNISEVGW----PKSGEIDIMEYVGKKPHEIHTTLHTQDSYGQSKNT 166          
BLAST of mRNA_P-wetherbeei_contig15476.1.1 vs. uniprot
Match: A0A7Y1VUG1_9BACT (Family 16 glycosylhydrolase n=1 Tax=Saprospiraceae bacterium TaxID=2202734 RepID=A0A7Y1VUG1_9BACT)

HSP 1 Score: 98.6 bits (244), Expect = 6.060e-20
Identity = 54/146 (36.99%), Postives = 79/146 (54.11%), Query Frame = 1
Query:    1 FDGTELDASIWEHQLGDGCP-DLCRWGTGQLQSFAKENALVADDQFRIEARSDKAADSPKCTSARVRTLGKRDFMSGMISARISFPSDDGMWPIFQLLPSDPDASGYGSWAARYGSVDMFET-RNNGEIVRYMLHFGGAYPNQQNS 432
            FDG+ LD + W  QLGDGC   +C WG  +LQ + +EN  V+D   +I A+ +   +    TSAR+ + GK D+  G   AR+  PS  GMWP F +L S      YG W  + G +D+ E   +  + V   +HFG   PN +++
Sbjct:   29 FDGSALDMTKWNIQLGDGCDLGICGWGNNELQFYQQENVEVSDGTLKIIAKRESVGNKAY-TSARITSKGKGDWTFGRFEARLKTPSGKGMWPAFWMLSSTEP---YGGWP-QSGEIDIMELIGSEPDQVHGTIHFGSPAPNNRSA 169          
BLAST of mRNA_P-wetherbeei_contig15476.1.1 vs. uniprot
Match: UPI001074E6C8 (glycoside hydrolase family 16 protein n=2 Tax=Flavobacterium TaxID=237 RepID=UPI001074E6C8)

HSP 1 Score: 94.4 bits (233), Expect = 1.170e-19
Identity = 50/147 (34.01%), Postives = 76/147 (51.70%), Query Frame = 1
Query:    1 FDGTELDASIWEHQLGDGCPDLCRWGTGQLQSFAKENALVADDQFRIEARSDKAADSPKCTSARVRTLGKRDFMSGMISARISFPSDDGMWPIFQLLPSDPDASGYGSWAARYGSVDMFE-TRNNGEIVRYMLHFGGAYPNQQNSNQ 438
            F+   L+ S W H+LGDGCPDLC WG  + Q + K N    D +  IEAR +      K TS ++ T GK++F+ G I A+   P   G+WP F +L ++ D      W  + G +D+ E    +  +V   LH   ++ N  N+ +
Sbjct:   29 FNKKTLNESFWNHELGDGCPDLCGWGNNERQIYTKNNHEFKDGKLIIEARKE----GEKYTSTKITTKGKKEFLYGRIEAKAKLPVGHGLWPAFWMLGANIDEV---KWP-KTGEIDILEYIGRDPHMVYTTLHTQDSHGNTINTKR 167          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15476.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A257LD01_9BACT9.160e-2537.25GH16 domain-containing protein n=1 Tax=Bacteroidet... [more]
A0A7Y2CJG4_9BACT1.410e-2240.71Family 16 glycosylhydrolase n=1 Tax=Gemmatimonadet... [more]
A0A7W1FYR0_9BACT5.470e-2238.26Family 16 glycosylhydrolase n=1 Tax=Bacteroidetes ... [more]
A0A2E4P871_FLASP1.630e-2134.69Laminarinase n=2 Tax=Flavobacterium TaxID=237 RepI... [more]
UPI001E459D632.270e-2137.24glycoside hydrolase family 16 protein n=1 Tax=Para... [more]
A0A6I4NQZ4_9FLAO3.000e-2134.01Family 16 glycosylhydrolase n=1 Tax=Flavobacterium... [more]
A0A4R5H9C2_9ALTE4.670e-2141.33Glycoside hydrolase family 16 protein n=1 Tax=Alte... [more]
A0A2E2ESX3_9FLAO4.490e-2034.48Laminarinase n=1 Tax=Flavobacteriaceae bacterium T... [more]
A0A7Y1VUG1_9BACT6.060e-2036.99Family 16 glycosylhydrolase n=1 Tax=Saprospiraceae... [more]
UPI001074E6C81.170e-1934.01glycoside hydrolase family 16 protein n=2 Tax=Flav... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15476contigP-wetherbeei_contig15476:223..1221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1280686.AUKE01000001_gene2209
PFAMsCBM_4_9,DUF1533,F5_F8_type_C,Glyco_hydro_16,SLH
Model size725
Max annot lvl186801|Clostridia
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.21e-08
EggNOG OGsCOG2273@1|root,COG2755@1|root,COG3250@1|root,COG3408@1|root,COG3488@1|root,COG2273@2|Bacteria,COG2755@2|Bacteria,COG3250@2|Bacteria,COG3408@2|Bacteria,COG3488@2|Bacteria,1TR5U@1239|Firmicutes,248GW@186801|Clostridia,4C1XG@830|Butyrivibrio
DescriptionBeta/gamma crystallins
Cds size471
COG categoryG
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186057.417548-UTR-P-wetherbeei_contig15476:222..4411683186057.417548-UTR-P-wetherbeei_contig15476:222..441Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15476 223..441 +
1683186057.4589064-UTR-P-wetherbeei_contig15476:1186..12211683186057.4589064-UTR-P-wetherbeei_contig15476:1186..1221Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15476 1187..1221 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186057.4292367-CDS-P-wetherbeei_contig15476:441..5671683186057.4292367-CDS-P-wetherbeei_contig15476:441..567Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15476 442..567 +
1683186057.4417264-CDS-P-wetherbeei_contig15476:841..11861683186057.4417264-CDS-P-wetherbeei_contig15476:841..1186Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15476 842..1186 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15476.1.1prot_P-wetherbeei_contig15476.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15476 442..1186 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15476.1.1

>prot_P-wetherbeei_contig15476.1.1 ID=prot_P-wetherbeei_contig15476.1.1|Name=mRNA_P-wetherbeei_contig15476.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=157bp
MSGMISARISFPSDDGMWPIFQLLPSDPDASGYGSWAARYGSVDMFETRN
NGEIVRYMLHFGGAYPNQQNSNQPSTVPNAPRRFRPAASTTTPCCGSRRY
FARTSTAPWFVRGRRDGRRRASIPRRLTGLSTPCSAWQSAGPTRTKRPAA
TLPCCP*
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mRNA from alignment at P-wetherbeei_contig15476:223..1221+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15476.1.1 ID=mRNA_P-wetherbeei_contig15476.1.1|Name=mRNA_P-wetherbeei_contig15476.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=999bp|location=Sequence derived from alignment at P-wetherbeei_contig15476:223..1221+ (Phaeothamnion wetherbeei SAG_119_79)
TTCGACGGAACCGAGCTCGACGCCTCCATCTGGGAGCACCAGCTGGGCGA CGGTTGCCCCGACCTCTGCCGCTGGGGCACCGGTCAACTCCAGTCATTTG CTAAGGAGAACGCCTTGGTCGCCGACGACCAGTTTCGGATCGAGGCGCGA AGCGATAAGGCGGCGGATAGCCCCAAGTGTACGTCGGCGAGGGTCCGTAC GCTGGGCAAGAGGGACTTTATGTCCGGCATGATCTCTGCCCGCATCTCAT TCCCCTCCGACGACGGCATGTGGCCTATCTTTCAGCTTTTGCCGTCGGAT CCGGACGCTTCGGGCTACGGCAGTTGGGCAGCCAGGTACGGTTCAGTTGA TCCTCACTTGTTCTCAGGTCGGTATTGCCCCCGATGATTACCATGCCAGC AGTCCCCTCCCCCCCATGTCTGTGGATGCTCCCGCGGCTGGTACTTTGGT TACCCTTTTGGTCACGCGCATTCTGGCGCGCGCTAGCTCAACTTTGCGGC GAACCCTGAAATGTATGCATACATGATTAACCTTTTGCTGCCGCACCAGT AGCCCTCAAAATTGATCGCCCCGCTGCCACCGCCCACCCTCTCCGCCTAA CTTCCGTCTCAGTGGATAGGTTGACATGTTCGAGACGCGAAACAACGGCG AGATCGTTCGATACATGCTTCATTTTGGCGGCGCGTACCCGAACCAGCAA AACAGCAACCAGCCGAGTACAGTGCCGAATGCTCCACGCCGGTTTCGACC GGCGGCTTCCACGACTACGCCGTGCTGTGGGAGTCGAAGGTATTTCGCTC GTACGTCGACGGCGCCTTGGTTTGTACGAGGACGTCGCGATGGTCGGAGA AGGGCAAGCATTCCGCGCCGTTTGACGGGCCTTTCCACCCCGTGCTCAGC CTGGCAGTCGGCGGGTCCCACCCGGACAAAGAGACCGGCGGCGACCTTGC CGTGCTGCCCTTGACCATGACCGTCGAGTATTTGCGCGCATTCGGCCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15476:223..1221+

>mRNA_P-wetherbeei_contig15476.1.1 ID=mRNA_P-wetherbeei_contig15476.1.1|Name=mRNA_P-wetherbeei_contig15476.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig15476:223..1221+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCGGCATGATCTCTGCCCGCATCTCATTCCCCTCCGACGACGGCAT
GTGGCCTATCTTTCAGCTTTTGCCGTCGGATCCGGACGCTTCGGGCTACG
GCAGTTGGGCAGCCAGGTACGGTTCAGTTGACATGTTCGAGACGCGAAAC
AACGGCGAGATCGTTCGATACATGCTTCATTTTGGCGGCGCGTACCCGAA
CCAGCAAAACAGCAACCAGCCGAGTACAGTGCCGAATGCTCCACGCCGGT
TTCGACCGGCGGCTTCCACGACTACGCCGTGCTGTGGGAGTCGAAGGTAT
TTCGCTCGTACGTCGACGGCGCCTTGGTTTGTACGAGGACGTCGCGATGG
TCGGAGAAGGGCAAGCATTCCGCGCCGTTTGACGGGCCTTTCCACCCCGT
GCTCAGCCTGGCAGTCGGCGGGTCCCACCCGGACAAAGAGACCGGCGGCG
ACCTTGCCGTGCTGCCCTTGA
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