mRNA_P-wetherbeei_contig1532.3.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig1532.3.2 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI) HSP 1 Score: 189 bits (479), Expect = 1.920e-51 Identity = 98/177 (55.37%), Postives = 130/177 (73.45%), Query Frame = 2
Query: 362 ARMAMSGLDYAESIEGAPFGDGVIWDPLGFAAKASAADVKKYREAELKHGRVAMLAALGIITAEVFHPLFIGDEYIGAAIYHFQEIEARVPIFWVLTILAIGIVEGETITRGWEKVDGVTGAGDLKDDYVNGDLGFDPLGLGTADKFE--EYRTKEVSQEHTDSMIGSIGMIVQELV 886
ARM+ +G DY ++ GAPF DG +WDP+G +++A D+KK+REAE+KHGRVAMLA++G++ AE FHPLF+G +YIG AI+HF+EI AR P FW LT+LAI +E I G+ ++D VTG G ++ DYV GDLGFDPLGL D+ E +TKE++ +MIG GMIVQELV
Sbjct: 90 ARMS-AGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRL-AMIGITGMIVQELV 264
BLAST of mRNA_P-wetherbeei_contig1532.3.2 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI) HSP 1 Score: 184 bits (467), Expect = 3.010e-50 Identity = 105/213 (49.30%), Postives = 135/213 (63.38%), Query Frame = 2
Query: 296 AAFVTPSLVAKVGGKTLAAKRPARMAMSGLDYAESIEGAPFG---DGVIWDPLGFAAKASAADVKKYREAELKHGRVAMLAALGIITAEVFHPLFIGDEYIGAAIYHFQEIEARVPIFWVLTILAIGIVEGETITRGWEKVDGVTGAGDLKDDYVNGDLGFDPLGLGTADKFEEYRTKEVSQEHTD----SMIGSIGMIVQELVDSKGILEHF 913
AAFV P + +AA +M +G DYA S+ GAPFG +G +DP G A +KK+REAELKHGRV+MLAA+GI+ +EVFHPLF+G YIG A+ H Q+I P+FWV ++ I +EG+TI W V VTG G+LK +Y GDLGFDPLGL D E++R + + D +MIG +GMIVQE+VD KGILEH
Sbjct: 19 AAFVAPIAAPRSSIARVAASSTPKMT-AGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDG-EDFRL--IQSQELDLGRYAMIGVLGMIVQEVVDGKGILEHI 227
BLAST of mRNA_P-wetherbeei_contig1532.3.2 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI) HSP 1 Score: 181 bits (460), Expect = 2.140e-49 Identity = 100/204 (49.02%), Postives = 132/204 (64.71%), Query Frame = 2
Query: 299 AFVTPSLVAKVGGKTLAAKRPARMAMSGLDYAESIEGAPFGDGVIWDPLGFAAKASAADVKKYREAELKHGRVAMLAALGIITAEVFHPLFIGDEYIGAAIYHFQEIEARVPIFWVLTILAIGIVEGETITRGWEKVDGVTGAGDLKDDYVNGDLGFDPLGLGTADK--FEEYRTKEVSQEHTDSMIGSIGMIVQELVDSKGIL 904
AFV P V A+ A +G DY ++ GAPFGDG I+DPL + A AD+KK+REAE+KHGRVAMLA+LG++ AE +HPLF+G +YIG A+ HFQEI A+ P FWV ++L + +E TI +E VTG G LK+DYV GDLGFDPL L D+ + +TKE++ +MIG GM+VQEL++ IL
Sbjct: 20 AFVAPMAVRSAAP---ASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRL-AMIGIAGMLVQELINPADIL 219
BLAST of mRNA_P-wetherbeei_contig1532.3.2 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI) HSP 1 Score: 175 bits (443), Expect = 6.340e-47 Identity = 98/208 (47.12%), Postives = 133/208 (63.94%), Query Frame = 2
Query: 299 AFVTPSLVAKVGGKTLAAKRPARMAMSGLDYAESIEGAPFGDGVIWDPLGFAAKASAADVKKYREAELKHGRVAMLAALGIITAEVFHPLFIGDEYIGAAIYHFQEIEARVPIFWVLTILAIGIVEGETITRGWEKVDGVTGAGDLKDDYVNGDLGFDPLGL---GTADKFEEYRTKEVSQEHTDSMIGSIGMIVQELVDSKGILEHF 913
AFV P V + A+ A +G DY ++ GAPF DG I+DPL + A+ D+KK+REAE+KHGRVAMLA+LGI+ AE +HPLF+G ++IG AI HFQEI A+ P FW ++L + +E TI ++ VTG G LK+DY+ GDLGFDPL L G A + +TKE++ +MIG GM+ QELV+ + IL +F
Sbjct: 20 AFVAPVAVRSAAPASAAS---ALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEA-ALDVMKTKELNNGRL-AMIGIAGMLAQELVNGQDILPNF 222
BLAST of mRNA_P-wetherbeei_contig1532.3.2 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI) HSP 1 Score: 173 bits (438), Expect = 2.960e-46 Identity = 96/204 (47.06%), Postives = 131/204 (64.22%), Query Frame = 2
Query: 299 AFVTPSLVAKVGGKTLAAKRPARMAMSGLDYAESIEGAPFGDGVIWDPLGFAAKASAADVKKYREAELKHGRVAMLAALGIITAEVFHPLFIGDEYIGAAIYHFQEIEARVPIFWVLTILAIGIVEGETITRGWEKVDGVTGAGDLKDDYVNGDLGFDPLGLGTADK--FEEYRTKEVSQEHTDSMIGSIGMIVQELVDSKGIL 904
AFV P V + A+ A +G DY ++ GAPFGDG I+DPL + A ++K +REAE+KHGRVAMLA +G+I AE +HPLF+G +YIG A+ HFQEI A+ P FW ++L + +E TIT+ + + VTG G L+D+Y GDLGFDPL L D+ E+ +TKE++ +MIG GM+VQELV+ IL
Sbjct: 21 AFVAPMAVRSAAPASSAS---ALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRL-AMIGIAGMLVQELVNPADIL 220
BLAST of mRNA_P-wetherbeei_contig1532.3.2 vs. uniprot
Match: A0A836CGF9_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGF9_9STRA) HSP 1 Score: 163 bits (412), Expect = 1.060e-42 Identity = 94/198 (47.47%), Postives = 123/198 (62.12%), Query Frame = 2
Query: 335 GKTLAAKRPARMAMSGLDYAESIEGAPFG-DGVIWDPLGFAAKASAADVKKYREAELKHGRVAMLAALGIITAEVFHPLFIGDEYIGAAIYHFQEIEARVPIFWVLTILAIGIVEGETITRGWEKVDGVT-GAGDLKDDYVNGDLGFDPLGLGTAD---KFEEYRTKEVSQEHTDSMIGSIGMIVQELVDSKGILEHF 913
GK L A+ A+ D A ++ G PFG +G ++DPLG A+K S ++K+Y+E ELKHGRVAMLA LG + AEVFHPLF IG +I HFQ IE VP FW+L + IG+ E + I RGW K D + G LKD+Y+ GD GFDPL LG KFE R KE++ +M +G+ QELV+ KG+ E+
Sbjct: 15 GKALQARPTTSSALKMAD-ASALIGKPFGAEGPVFDPLGLASKVSDIELKRYQECELKHGRVAMLAVLGSLVAEVFHPLFPMSFEIGPSIRHFQIIEREVPYFWILAMFGIGVFEADNIYRGWVKQDPIRDGIASLKDNYIVGDFGFDPLNLGPTSEPQKFELMRAKELNNGRL-AMFAILGIWAQELVNGKGVFENI 210
BLAST of mRNA_P-wetherbeei_contig1532.3.2 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI) HSP 1 Score: 160 bits (404), Expect = 5.040e-42 Identity = 82/164 (50.00%), Postives = 112/164 (68.29%), Query Frame = 2
Query: 431 IWDPLGFAAKASAADVKKYREAELKHGRVAMLAALGIITAEVFHPLFIGDEYIGAAIYHFQEIEARVPIFWVLTILAIGIVEGETITRGWEKVDGVTGAGDLKDDYVNGDLGFDPLGLGTADK--FEEYRTKEVSQEHTDSMIGSIGMIVQELVDSKGILEHFN 916
I+DPLG A A D+K +REAE+KHGRVAMLA+LG++ AE +HP F+G +YIG A+ HFQEI AR P FW ++LA+ ++E TIT+ + + VTG G L+D+Y GDLGFDPL L D+ E +TKE++ +MIG G +VQELV+ IL+ +
Sbjct: 16 IFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRL-AMIGIAGTLVQELVNPTNILDFLH 178
BLAST of mRNA_P-wetherbeei_contig1532.3.2 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI) HSP 1 Score: 156 bits (395), Expect = 1.590e-40 Identity = 81/160 (50.62%), Postives = 109/160 (68.12%), Query Frame = 2
Query: 431 IWDPLGFAAKASAADVKKYREAELKHGRVAMLAALGIITAEVFHPLFIGDEYIGAAIYHFQEIEARVPIFWVLTILAIGIVEGETITRGWEKVDGVTGAGDLKDDYVNGDLGFDPLGLGTADK--FEEYRTKEVSQEHTDSMIGSIGMIVQELVDSKGIL 904
I+DPLG + A+ D+KK+REAE+KHGRVAMLA+LG+I AE +HP F+G +YIG A+ HFQEI A+ P FW ++L + VE TI ++ VTG G LK+DY+ GDLGFDPL L D+ + +TKE++ +MIG GM+ QELV+ IL
Sbjct: 37 IFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRL-AMIGIAGMLAQELVNPADIL 195
BLAST of mRNA_P-wetherbeei_contig1532.3.2 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI) HSP 1 Score: 152 bits (383), Expect = 1.440e-38 Identity = 88/205 (42.93%), Postives = 127/205 (61.95%), Query Frame = 2
Query: 296 AAFVTPSLVAKVGGKTLAAKRPARMAMSGLDYAESIEGAPFGDGVIWDPLGFAAKASAADVKKYREAELKHGRVAMLAALGIITAEVFHPLFIGDEYIGAAIYHFQEIEARVPIFWVLTILAIGIVEGETITRGWEKVDGVTGAGDLKDDYVNGDLGFDPLGLGTADK--FEEYRTKEVSQEHTDSMIGSIGMIVQELVDSKGIL 904
AAFVTP V + A+ A +G DY ++ GA +G I+D L A A ++K +REAE+KHGRVAMLA +G++ AE +HP F+G +YIG A+ HFQEI A+ P FW ++L + +E TI + + + VTG G L+D+Y GDLGFDP + D+ E+ + KE++ +MIG +GM+VQELV+ + IL
Sbjct: 20 AAFVTPMAVRSAAPASSAS---ALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRL-AMIGIVGMLVQELVNGQDIL 217
BLAST of mRNA_P-wetherbeei_contig1532.3.2 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE) HSP 1 Score: 155 bits (392), Expect = 6.420e-38 Identity = 80/160 (50.00%), Postives = 109/160 (68.12%), Query Frame = 2
Query: 431 IWDPLGFAAKASAADVKKYREAELKHGRVAMLAALGIITAEVFHPLFIGDEYIGAAIYHFQEIEARVPIFWVLTILAIGIVEGETITRGWEKVDGVTGAGDLKDDYVNGDLGFDPLGLGTADK--FEEYRTKEVSQEHTDSMIGSIGMIVQELVDSKGIL 904
I+DPLG + A+ D+KK+REAE+KHGRVAMLA+LG+I AE +HP F+G +YIG A+ HFQEI A+ P FW ++L + +E TI ++ VTG G LK+DY+ GDLGFDPL L D+ + +TKE++ +MIG GM+ QELV+ IL
Sbjct: 233 IFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRL-AMIGIAGMLAQELVNPADIL 391 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1532.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1532.3.2 >prot_P-wetherbeei_contig1532.3.2 ID=prot_P-wetherbeei_contig1532.3.2|Name=mRNA_P-wetherbeei_contig1532.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=226bp MKAAMMIAALPTVAAFVTPSLVAKVGGKTLAAKRPARMAMSGLDYAESIEback to top mRNA from alignment at P-wetherbeei_contig1532:3600..6977+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig1532.3.2 ID=mRNA_P-wetherbeei_contig1532.3.2|Name=mRNA_P-wetherbeei_contig1532.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3378bp|location=Sequence derived from alignment at P-wetherbeei_contig1532:3600..6977+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig1532:3600..6977+ >mRNA_P-wetherbeei_contig1532.3.2 ID=mRNA_P-wetherbeei_contig1532.3.2|Name=mRNA_P-wetherbeei_contig1532.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=678bp|location=Sequence derived from alignment at P-wetherbeei_contig1532:3600..6977+ (Phaeothamnion wetherbeei SAG_119_79)back to top |