mRNA_P-wetherbeei_contig1525.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1525.1.1
Unique NamemRNA_P-wetherbeei_contig1525.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1525.1.1 vs. uniprot
Match: A0A482RS68_9ARCH (WW domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RS68_9ARCH)

HSP 1 Score: 77.8 bits (190), Expect = 7.260e-15
Identity = 30/80 (37.50%), Postives = 50/80 (62.50%), Query Frame = 1
Query:   19 HWWNAVTQQ---SSPVQPLAHKRGLVGSRVLVYWPAEGTSFSGVLTRFNARRGKHRVEYDDGEHEWIELEEQQVRLPFSV 249
            +W N +T +     P +PLAH+ G++  RV V+W  +   + G +TR++ R+ +HRVEYDDG+HEW+ L+ +  R+    
Sbjct:  676 YWQNHITNEITFDEPSKPLAHELGMLSKRVRVFWVVQNAWYEGTVTRYHKRKNRHRVEYDDGDHEWMNLDNEAERIQVQA 755          
BLAST of mRNA_P-wetherbeei_contig1525.1.1 vs. uniprot
Match: A0A7S3HAT1_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HAT1_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.190e-13
Identity = 30/76 (39.47%), Postives = 50/76 (65.79%), Query Frame = 1
Query:   19 HWWNAVTQ---QSSPVQPLAHKRGLVGSRVLVYWPAEGTSFSGVLTRFNARRGKHRVEYDDGEHEWIELEEQQVRL 237
            +W N  T       P + LAH++ LV +R+ VYW  +   + G++T+++ R+ +HRVEYDDG+HEWI L+++  R+
Sbjct:  460 YWQNFATNVITYDEPEEELAHEKNLVNTRIKVYWVVQDCWYGGIITKYHRRKRRHRVEYDDGDHEWINLQDECDRV 535          
BLAST of mRNA_P-wetherbeei_contig1525.1.1 vs. uniprot
Match: K3WKC7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WKC7_GLOUD)

HSP 1 Score: 70.5 bits (171), Expect = 2.710e-12
Identity = 30/72 (41.67%), Postives = 48/72 (66.67%), Query Frame = 1
Query:    1 DTTGESHWWNAVTQQSSPVQPL--AHKRGLVGSRVLVYWPAEGTSFSGVLTRFNARRGKHRVEYDDGEHEWI 210
            D  G+  W++   +Q   ++P   AH+R ++G +  V+WP E   F+GV+TR+N  + KHRVEY+DG+HEW+
Sbjct:  752 DEYGDQFWFSPSRKQRLYMRPNDNAHERTMLGMQCRVFWPLEQQWFNGVITRYNRVKSKHRVEYEDGDHEWL 823          
BLAST of mRNA_P-wetherbeei_contig1525.1.1 vs. uniprot
Match: A0A699YUQ4_HAELA (DNA mismatch repair protein n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699YUQ4_HAELA)

HSP 1 Score: 63.5 bits (153), Expect = 1.770e-11
Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = 1
Query:   82 LVGSRVLVYWPAEGTSFSGVLTRFNARRGKHRVEYDDGEHEWIELEEQQVRL 237
            +VG R+ V+WP EGT F G ++R++  +GKHRV YDDG+ EW+ L  +Q  L
Sbjct:   24 VVGRRIKVFWPQEGTWFEGSISRYDQDKGKHRVCYDDGDKEWVVLSAEQYEL 75          
BLAST of mRNA_P-wetherbeei_contig1525.1.1 vs. uniprot
Match: A0A8K1CJ04_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJ04_PYTOL)

HSP 1 Score: 67.4 bits (163), Expect = 3.160e-11
Identity = 30/83 (36.14%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    1 DTTGESHWWNAVTQQSSPVQP--LAHKRGLVGSRVLVYWPAEGTSFSGVLTRFNARRGKHRVEYDDGEHEW--IELEEQQVRL 237
            D  G   W++    +   V+P   A+++ ++G    V+WP E   F+G +TR+N  + KHR+EYDDG+HEW  + +E  +V+L
Sbjct:  188 DDNGHQFWFSPSRNERHYVRPNDFAYQKSMLGMYCRVFWPLEQQWFNGRITRYNHAKNKHRIEYDDGDHEWFCVHIEGDRVQL 270          
BLAST of mRNA_P-wetherbeei_contig1525.1.1 vs. uniprot
Match: A0A5D6XXT6_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXT6_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 3.290e-11
Identity = 29/81 (35.80%), Postives = 49/81 (60.49%), Query Frame = 1
Query:    1 DTTGESHWWNAVTQQSSPVQPL--AHKRGLVGSRVLVYWPAEGTSFSGVLTRFNARRGKHRVEYDDGEHEWIELEEQQVRL 237
            D +G   W++   +Q   V+P   A ++ ++G    VYWP E   FSG ++++N  + KHRVEYDDG+H+W++   +  R+
Sbjct:  754 DESGGQFWFSPSRKQRQYVRPNDNALEKAMLGLYCRVYWPLEQQWFSGYVSKYNREKNKHRVEYDDGDHDWLDFRVEGARI 834          
BLAST of mRNA_P-wetherbeei_contig1525.1.1 vs. uniprot
Match: A0A7S4EA95_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EA95_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 4.000e-10
Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = 1
Query:   82 LVGSRVLVYWPAEGTSFSGVLTRFNARRGKHRVEYDDGEHEWIELEEQQVRL 237
            L+G  V V+WP E   F GVL RF+ RR K+RVEY DG+HEWI+++E   RL
Sbjct:  812 LIGCSVRVFWPLEEQWFEGVLARFHRRRRKYRVEYIDGDHEWIDVDEAADRL 863          
BLAST of mRNA_P-wetherbeei_contig1525.1.1 vs. uniprot
Match: A0A7S4A0T5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A0T5_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 4.020e-10
Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = 1
Query:   82 LVGSRVLVYWPAEGTSFSGVLTRFNARRGKHRVEYDDGEHEWIELEEQQVRL 237
            L+G  V V+WP E   F GVL RF+ RR K+RVEY DG+HEWI+++E   RL
Sbjct:  812 LIGCSVRVFWPLEEQWFEGVLARFHRRRRKYRVEYIDGDHEWIDVDEAADRL 863          
BLAST of mRNA_P-wetherbeei_contig1525.1.1 vs. uniprot
Match: A0A2D4BZ82_PYTIN (Transcription elongation factor SPT5, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZ82_PYTIN)

HSP 1 Score: 63.2 bits (152), Expect = 1.040e-9
Identity = 28/74 (37.84%), Postives = 43/74 (58.11%), Query Frame = 1
Query:    1 DTTGESHWWNAVTQQSSPVQPLAHK--RGLVGSRVLVYWPAEGTSFSGVLTRFNARRGKHRVEYDDGEHEWIEL 216
            D  G   W++    +   V+P  H   + L+G    V+WP E   F+G +TR+N  + KHRV+YDDG+HEW+ +
Sbjct: 1539 DEQGYQFWFSPSRNERHYVRPNDHALAKSLLGMPCRVFWPLEQQWFTGRVTRYNHSKDKHRVDYDDGDHEWLRV 1612          
BLAST of mRNA_P-wetherbeei_contig1525.1.1 vs. uniprot
Match: A0A662WGS7_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WGS7_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 3.550e-9
Identity = 27/74 (36.49%), Postives = 43/74 (58.11%), Query Frame = 1
Query:    1 DTTGESHWWNAVTQQSSPVQPLAHKR--GLVGSRVLVYWPAEGTSFSGVLTRFNARRGKHRVEYDDGEHEWIEL 216
            D  G+  W++    +   V+P  H R   ++     V WP E   F G +TR+N ++G+HRV+YDDG+HEW+ +
Sbjct:  756 DERGDQFWFSPSRNERLYVRPNDHAREKSVLQMPCRVLWPHEQRWFDGHVTRYNWKKGRHRVDYDDGDHEWLSI 829          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1525.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A482RS68_9ARCH7.260e-1537.50WW domain-containing protein n=1 Tax=archaeon TaxI... [more]
A0A7S3HAT1_9STRA1.190e-1339.47Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
K3WKC7_GLOUD2.710e-1241.67Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A699YUQ4_HAELA1.770e-1150.00DNA mismatch repair protein n=1 Tax=Haematococcus ... [more]
A0A8K1CJ04_PYTOL3.160e-1136.14Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XXT6_9STRA3.290e-1135.80Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S4EA95_9STRA4.000e-1055.77Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4A0T5_9STRA4.020e-1055.77Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A2D4BZ82_PYTIN1.040e-937.84Transcription elongation factor SPT5, putative n=1... [more]
A0A662WGS7_9STRA3.550e-936.49Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1525contigP-wetherbeei_contig1525:418..933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FGX1
Preferred nameC2orf69
PFAMsUPF0565
Model size252
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0007154,GO:0007267,GO:0008150,GO:0009987,GO:0023052,GO:0030154,GO:0032502,GO:0045165,GO:0045168,GO:0046331,GO:0048869
Exons2
Evalue1.64e-15
EggNOG OGsKOG2800@1|root,KOG4341@1|root,KOG2800@2759|Eukaryota,KOG4341@2759|Eukaryota
Descriptionmodulation by host of viral RNA genome replication
Cds size252
COG categoryKLT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186049.6179848-CDS-P-wetherbeei_contig1525:417..5411683186049.6179848-CDS-P-wetherbeei_contig1525:417..541Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1525 418..541 -
1683186049.6276274-CDS-P-wetherbeei_contig1525:805..9331683186049.6276274-CDS-P-wetherbeei_contig1525:805..933Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1525 806..933 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1525.1.1prot_P-wetherbeei_contig1525.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1525 418..933 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1525.1.1

>prot_P-wetherbeei_contig1525.1.1 ID=prot_P-wetherbeei_contig1525.1.1|Name=mRNA_P-wetherbeei_contig1525.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=84bp
DTTGESHWWNAVTQQSSPVQPLAHKRGLVGSRVLVYWPAEGTSFSGVLTR
FNARRGKHRVEYDDGEHEWIELEEQQVRLPFSV*
back to top

mRNA from alignment at P-wetherbeei_contig1525:418..933-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1525.1.1 ID=mRNA_P-wetherbeei_contig1525.1.1|Name=mRNA_P-wetherbeei_contig1525.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=516bp|location=Sequence derived from alignment at P-wetherbeei_contig1525:418..933- (Phaeothamnion wetherbeei SAG_119_79)
GACACCACGGGAGAGTCGCACTGGTGGAACGCGGTGACGCAGCAGTCGTC GCCCGTTCAGCCGCTGGCTCACAAGCGCGGCCTCGTCGGGTCCCGTGTGC TTGTCTACTGGCCAGCGGAAGGGACCAGGTGCGTGCCGTGCAGCGGCTGA CCGCTCGCAAAGCGGAGTTATCTCTCCACGCCAGCTATGCCTTGTGCCGT CGTCCATGCGTTCTTGAGGTTCTCGTCCGCGGCGGGGGAAAGCCTGTATG CAGACCTGGTATACCGAGATAAGCTGCAACGATGACTGTCGCTTCGGTAG CCTAACCAGGGTGCCGCGGTTCCTCGTTGCTCATTCTGGCTGCTGCTTTC TTGTGTCTGCTTCGGTCTCTTCCGTTTTGTTCCCCAACACAGCTTTAGCG GCGTCCTGACGCGCTTCAACGCGCGGCGCGGCAAGCACCGCGTCGAGTAC GACGACGGCGAGCACGAGTGGATCGAACTTGAAGAGCAGCAAGTGAGGTT ACCTTTTTCTGTCTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1525:418..933-

>mRNA_P-wetherbeei_contig1525.1.1 ID=mRNA_P-wetherbeei_contig1525.1.1|Name=mRNA_P-wetherbeei_contig1525.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=252bp|location=Sequence derived from alignment at P-wetherbeei_contig1525:418..933- (Phaeothamnion wetherbeei SAG_119_79)
GACACCACGGGAGAGTCGCACTGGTGGAACGCGGTGACGCAGCAGTCGTC
GCCCGTTCAGCCGCTGGCTCACAAGCGCGGCCTCGTCGGGTCCCGTGTGC
TTGTCTACTGGCCAGCGGAAGGGACCAGCTTTAGCGGCGTCCTGACGCGC
TTCAACGCGCGGCGCGGCAAGCACCGCGTCGAGTACGACGACGGCGAGCA
CGAGTGGATCGAACTTGAAGAGCAGCAAGTGAGGTTACCTTTTTCTGTCT
GA
back to top