mRNA_P-wetherbeei_contig1517.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1517.4.1
Unique NamemRNA_P-wetherbeei_contig1517.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1517.4.1 vs. uniprot
Match: A0A835YLN6_9STRA (HIT-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLN6_9STRA)

HSP 1 Score: 124 bits (311), Expect = 9.450e-32
Identity = 83/190 (43.68%), Postives = 106/190 (55.79%), Query Frame = 3
Query:   81 CSACAAEAPKYRCPACEARYCSVACCKRHKEG--GED----RPPCSGKRAAAEDKLALTRKRARATAAPAIP-----------------------KVAPAGNPLAQCLEEQEAEAWRLQPEQRGKLARCEWLKAALRDPKLQMLLREIDGADDNDAELRFARTNPQFAEFVDKMLLELGLLVRSGVGELE 563
            C  C     KYRC  C+ARYCSVAC K HK G  GE+    RPPC+GKRA A D      + A   AAPA+                           P  +   +  +E+EA  W+L    R +L+  EWL+AALRDPKLQ L+ +IDGA + +AELRF RTNP+F+  +D++LLE+GLL RS  G LE
Sbjct:   19 CHICNQAPSKYRCAGCDARYCSVACFKTHKAGSTGENGTPVRPPCTGKRARAGDDAG---RPAADNAAPAVRLQQXXXXXXXXXXXXXXXXXXXRSAVPVESVKKEAAQEEEA-GWQLTDAHRAQLSGSEWLRAALRDPKLQTLILQIDGARNREAELRFHRTNPEFSALMDRILLEMGLLNRSADGNLE 204          
BLAST of mRNA_P-wetherbeei_contig1517.4.1 vs. uniprot
Match: A0A553MVG7_9TELE (Zinc finger HIT domain-containing protein 3 n=1 Tax=Danionella translucida TaxID=623744 RepID=A0A553MVG7_9TELE)

HSP 1 Score: 75.9 bits (185), Expect = 8.570e-14
Identity = 53/147 (36.05%), Postives = 75/147 (51.02%), Query Frame = 3
Query:   81 CSACAAEAPKYRCPACEARYCSVACCKRHKEGGEDRPPCSGKRAAAEDKLALTRKRARATAAPAIPKVAPAGNP-LAQCLEEQEAEAWRLQPEQRGKLARCEWLKAALRDPKLQMLLREIDGADDNDAELRFARTNPQFAEFVDKML 518
            CS C+   PKYRCP C  RYCSV C +RHKE G  RP              +  ++  +TAAP    +  A  P   + L ++E ++ R+  E+  +L   E LK  LR+P L+ L+  +D A+D    +R A   P F EF D+ L
Sbjct:    4 CSVCSEHVPKYRCPICRVRYCSVGCFRRHKEIGSCRP-------------VIEPEQVSSTAAP----IGRAEEPWTVEDLLDEEGQSDRVPLEKLQQLGHSEALKDLLRNPHLRRLVTSVDSAEDKARAMREAMQEPLFVEFADQCL 133          
BLAST of mRNA_P-wetherbeei_contig1517.4.1 vs. uniprot
Match: UPI001560DB4C (zinc finger HIT domain-containing protein 3-like n=2 Tax=Acipenser ruthenus TaxID=7906 RepID=UPI001560DB4C)

HSP 1 Score: 75.5 bits (184), Expect = 1.120e-13
Identity = 55/151 (36.42%), Postives = 79/151 (52.32%), Query Frame = 3
Query:   81 CSACAAEAPKYRCPACEARYCSVACCKRHKEGGEDRPPCSGKRAAAEDKLALTRKRARATAAPAIPKVAPAGNP-----LAQCLEEQEAEAWRLQPEQRGKLARCEWLKAALRDPKLQMLLREIDGADDNDAELRFARTNPQFAEFVDKML 518
            CS C  E PKYRCP C  RYCS+ C K+HK+G      C  K+          +K  +   +PA+  +  AG+      +   LEE E E+ R+  +Q  +L  CE LKA L +P L+ LLR +D A+  ++ ++ A   P F EF D+ L
Sbjct:    4 CSVCNEELPKYRCPGCLIRYCSLNCYKKHKDG------CIPKKD-------TEKKPEKPELSPALQGMRQAGSTERRWSVEDRLEEYE-ESDRVPLQQLARLGECEALKALLYNPHLRQLLRTVDKAEGKESTMKVAMQEPLFVEFADQCL 140          
BLAST of mRNA_P-wetherbeei_contig1517.4.1 vs. uniprot
Match: H3BD28_LATCH (Zinc finger HIT domain-containing protein 3 n=2 Tax=Latimeria chalumnae TaxID=7897 RepID=H3BD28_LATCH)

HSP 1 Score: 70.9 bits (172), Expect = 6.880e-12
Identity = 58/151 (38.41%), Postives = 77/151 (50.99%), Query Frame = 3
Query:   81 CSACAAEAPKYRCPACEARYCSVACCKRHKEGGEDRPPCSGKRAAAEDKLALTRKRARATAAPAIPKVAPAGNP-----LAQCLEEQEAEAWRLQPEQRGKLARCEWLKAALRDPKLQMLLREIDGADDNDAELRFARTNPQFAEFVDKML 518
            C  CA EAPKYRCPAC  RYCSV CCK+HKE       C      +E+ +  T        +P++  V  A N      +   L+E E E+ R+ P Q+ KL   E LK  L +P L+ LL  ID A+D  + ++     P F EF D+ L
Sbjct:    4 CGICAGEAPKYRCPACRTRYCSVPCCKKHKES------CIP----SEEPVPAT---VTLHVSPSLRGVVQAENQGNSRSVDNLLDEDE-ESDRVCP-QKLKLLESEDLKDLLCNPHLRQLLLSIDQAEDKASVMKVTMQEPLFVEFADQCL 139          
BLAST of mRNA_P-wetherbeei_contig1517.4.1 vs. uniprot
Match: A0A8C3ZTA1_9TELE (Zinc finger HIT domain-containing protein 3 n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C3ZTA1_9TELE)

HSP 1 Score: 70.5 bits (171), Expect = 7.850e-12
Identity = 54/158 (34.18%), Postives = 71/158 (44.94%), Query Frame = 3
Query:   81 CSACAAEAPKYRCPACEARYCSVACCKRHKE------------GGEDRPPCSGKRAAAEDKLALTRKRARATAAPAIPKVAPAGNPLAQCLEEQEAEAWRLQPEQRGKLARCEWLKAALRDPKLQMLLREIDGADDNDAELRFARTNPQFAEFVDKML 518
            C+ C  +APKYRCPAC+ RYCSV CCK+HKE              E R PC+G    AE+ LA+           A+P       P  + L E EA                  L+  L +P L+ LL  +DGA +    ++ A   P F EF D+ L
Sbjct:    4 CAVCDQQAPKYRCPACQVRYCSVGCCKKHKEECKPQARPATAAAPEGRQPCAG----AEEPLAVHDLLNEDDQTDAVPL------PSLKQLGESEA------------------LRDLLLNPHLRRLLAAVDGAQNKAEAMKTAMQEPLFVEFADQCL 133          
BLAST of mRNA_P-wetherbeei_contig1517.4.1 vs. uniprot
Match: A0A6P5A0L7_BRABE (Zinc finger HIT domain-containing protein 3 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P5A0L7_BRABE)

HSP 1 Score: 68.6 bits (166), Expect = 4.940e-11
Identity = 49/148 (33.11%), Postives = 73/148 (49.32%), Query Frame = 3
Query:   75 VKCSACAAEAPKYRCPACEARYCSVACCKRHKEGGEDRPPCSGKRAAAEDKLALTRKRARATAAPAIPKVAPAGNPLAQCLEEQEAEAWRLQPEQRGKLARCEWLKAALRDPKLQMLLREIDGADDNDAELRFARTNPQFAEFVDKML 518
            V C  C+ + PKYRCP CE RYCS+ C   HKE         G+R    +KL   R R + + A A          +     ++  E  R+  ++  KL   E L++ L +P LQ ++RE+D +DD +  ++ A   P F EF D+ L
Sbjct:    2 VTCEVCSEQPPKYRCPRCEVRYCSLTCFNLHKEN------TCGER----EKLVQERNRIQQSEAAAAEDAGAVAMEMWDDGMDEGDEEDRVPLDRLQKLQDSEELRSLLCNPHLQRMIREVDSSDDPEVSMQRAMQEPIFVEFADQCL 139          
BLAST of mRNA_P-wetherbeei_contig1517.4.1 vs. uniprot
Match: UPI001B7F1F65 (zinc finger HIT domain-containing protein 3-like n=2 Tax=Polyodon spathula TaxID=7913 RepID=UPI001B7F1F65)

HSP 1 Score: 68.2 bits (165), Expect = 7.970e-11
Identity = 50/146 (34.25%), Postives = 76/146 (52.05%), Query Frame = 3
Query:   81 CSACAAEAPKYRCPACEARYCSVACCKRHKEGGEDRPPCSGKRAAAEDKLALTRKRARATAAPAIPKVAPAGNPLAQCLEEQEAEAWRLQPEQRGKLARCEWLKAALRDPKLQMLLREIDGADDNDAELRFARTNPQFAEFVDKML 518
            CS C    PKYRCP C  RYCS+ C K+HK+  E  P    ++   + +L+ T +  R        +   +   +   LEE E E+ R+  +Q  +L  CE +KA L +P L+ LLR +D A+  ++ ++ A   P F EF D+ L
Sbjct:    4 CSVCNEGLPKYRCPGCLIRYCSLNCYKKHKD--ECIPKKDNEKKTEQSELSPTLREMRQA------ESTESRWSVEDLLEEDE-ESDRVPLQQLARLGECEAVKALLYNPHLRQLLRTVDKAEGKESIMKEAMQEPLFVEFADQCL 140          
BLAST of mRNA_P-wetherbeei_contig1517.4.1 vs. uniprot
Match: A0A3B3T878_9TELE (Zinc finger HIT domain-containing protein 3 n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3T878_9TELE)

HSP 1 Score: 66.2 bits (160), Expect = 2.710e-10
Identity = 51/150 (34.00%), Postives = 74/150 (49.33%), Query Frame = 3
Query:   81 CSACAAEAPKYRCPACEARYCSVACCKRHKEGGEDRPPCSGKRAAAEDKLALTRKRARATAAPAIPKVAPA----GNPLAQCLEEQEAEAWRLQPEQRGKLARCEWLKAALRDPKLQMLLREIDGADDNDAELRFARTNPQFAEFVDKML 518
            CS C+   PKYRCP C+ +YCSV C K+HK+G      CS      E+ L             A+P+        G+   + L ++E E+ ++  E+  KL   E LKA LR+  L+ LL  +DGA+     ++ A   P F EF D+ L
Sbjct:    4 CSVCSETVPKYRCPTCKIKYCSVICYKKHKDG------CSP----VEETLPA-----------ALPEPGGTWCRDGDWTVEDLVDEEDESDKVPLERLKKLGESEELKALLRNAHLRRLLLAVDGAESKADIMKVAMQEPLFVEFADQCL 132          
BLAST of mRNA_P-wetherbeei_contig1517.4.1 vs. uniprot
Match: A0A0E9WHR7_ANGAN (Zinc finger HIT domain-containing protein 3 n=1 Tax=Anguilla anguilla TaxID=7936 RepID=A0A0E9WHR7_ANGAN)

HSP 1 Score: 65.9 bits (159), Expect = 4.400e-10
Identity = 47/146 (32.19%), Postives = 73/146 (50.00%), Query Frame = 3
Query:   81 CSACAAEAPKYRCPACEARYCSVACCKRHKEGGEDRPPCSGKRAAAEDKLALTRKRARATAAPAIPKVAPAGNPLAQCLEEQEAEAWRLQPEQRGKLARCEWLKAALRDPKLQMLLREIDGADDNDAELRFARTNPQFAEFVDKML 518
            CS C+   PKY+CPAC+ RYCSV+C K HK+G      C   +  A   LA           P        G+   + L +++ ++ R+  ++  +L   + L+A L +P L+ LL  +D A+D  A ++ A   P F EF D+ L
Sbjct:    4 CSVCSEHVPKYKCPACKIRYCSVSCYKNHKDG------CLPVKQTASPALA-----------PDFKATHSGGDWSVEDLLDEDEQSDRVPLQKLKELGESKDLEALLCNPHLRQLLLTVDQAEDKAAIMKVAMQEPLFVEFADQCL 132          
BLAST of mRNA_P-wetherbeei_contig1517.4.1 vs. uniprot
Match: A0A3Q1HKG2_ANATE (Zinc finger HIT domain-containing protein 3 n=1 Tax=Anabas testudineus TaxID=64144 RepID=A0A3Q1HKG2_ANATE)

HSP 1 Score: 65.5 bits (158), Expect = 5.380e-10
Identity = 53/149 (35.57%), Postives = 73/149 (48.99%), Query Frame = 3
Query:   81 CSACAAEAPKYRCPACEARYCSVACCKRHKEGGEDRPPCSGKRAAAEDKLALTRKRARATAAPAIPKVAPAGNPLAQCLEE--QEAEAWRLQPEQRGKL-ARCEWLKAALRDPKLQMLLREIDGADDNDAELRFARTNPQFAEFVDKML 518
            C+ C+ E PKYRCPAC+ RYCS+ C KRHKE     PP   K                    P +P+V    N  +  +E+   E +     P QR +L  + + L+  L +P L+ LLR ID AD+ D  ++ A   P F EF D+ L
Sbjct:    4 CNVCSEETPKYRCPACKIRYCSLGCYKRHKE--TCLPPEQPK--------------------PTVPEVNDTLNTDSWTVEDLLHEDDIIDKVPLQRLQLLGQSKELRDILCNPHLRQLLRSIDSADNKDDAMKAAMQEPLFVEFSDQCL 130          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1517.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YLN6_9STRA9.450e-3243.68HIT-type domain-containing protein n=1 Tax=Tribone... [more]
A0A553MVG7_9TELE8.570e-1436.05Zinc finger HIT domain-containing protein 3 n=1 Ta... [more]
UPI001560DB4C1.120e-1336.42zinc finger HIT domain-containing protein 3-like n... [more]
H3BD28_LATCH6.880e-1238.41Zinc finger HIT domain-containing protein 3 n=2 Ta... [more]
A0A8C3ZTA1_9TELE7.850e-1234.18Zinc finger HIT domain-containing protein 3 n=1 Ta... [more]
A0A6P5A0L7_BRABE4.940e-1133.11Zinc finger HIT domain-containing protein 3 n=1 Ta... [more]
UPI001B7F1F657.970e-1134.25zinc finger HIT domain-containing protein 3-like n... [more]
A0A3B3T878_9TELE2.710e-1034.00Zinc finger HIT domain-containing protein 3 n=1 Ta... [more]
A0A0E9WHR7_ANGAN4.400e-1032.19Zinc finger HIT domain-containing protein 3 n=1 Ta... [more]
A0A3Q1HKG2_ANATE5.380e-1035.57Zinc finger HIT domain-containing protein 3 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1517contigP-wetherbeei_contig1517:5133..5804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7897.ENSLACP00000019799
Preferred nameZNHIT3
PFAMszf-HIT
Model size672
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006355,GO:0008134,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0035257,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0046966,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0051427,GO:0060255,GO:0065007,GO:0080090,GO:1903506,GO:2000112,GO:2001141
Exons1
Evalue3.66e-13
EggNOG OGsKOG2857@1|root,KOG2857@2759|Eukaryota,3A8DH@33154|Opisthokonta,3BUPR@33208|Metazoa,3DARF@33213|Bilateria,48G5G@7711|Chordata,49D2N@7742|Vertebrata
Ec32 ortholog descriptionZinc finger, HIT-type
Ec32 orthologEc-01_004870.1
Descriptionzinc finger
Cds size519
COG categoryK
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186046.999596-UTR-P-wetherbeei_contig1517:5132..51851683186046.999596-UTR-P-wetherbeei_contig1517:5132..5185Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1517 5133..5185 +
1683186047.0153618-UTR-P-wetherbeei_contig1517:5704..58041683186047.0153618-UTR-P-wetherbeei_contig1517:5704..5804Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1517 5705..5804 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186047.0078793-CDS-P-wetherbeei_contig1517:5185..57041683186047.0078793-CDS-P-wetherbeei_contig1517:5185..5704Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1517 5186..5704 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1517.4.1prot_P-wetherbeei_contig1517.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1517 5186..5704 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1517.4.1

>prot_P-wetherbeei_contig1517.4.1 ID=prot_P-wetherbeei_contig1517.4.1|Name=mRNA_P-wetherbeei_contig1517.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=173bp
MAPKQQTVKCSACAAEAPKYRCPACEARYCSVACCKRHKEGGEDRPPCSG
KRAAAEDKLALTRKRARATAAPAIPKVAPAGNPLAQCLEEQEAEAWRLQP
EQRGKLARCEWLKAALRDPKLQMLLREIDGADDNDAELRFARTNPQFAEF
VDKMLLELGLLVRSGVGELETT*
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mRNA from alignment at P-wetherbeei_contig1517:5133..5804+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1517.4.1 ID=mRNA_P-wetherbeei_contig1517.4.1|Name=mRNA_P-wetherbeei_contig1517.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=672bp|location=Sequence derived from alignment at P-wetherbeei_contig1517:5133..5804+ (Phaeothamnion wetherbeei SAG_119_79)
CAAGCATCGAATAGTGGGTGAAGCCAAAAAGCCCGTACTGCCAAAAAACG AGCATGGCGCCCAAGCAGCAGACCGTCAAGTGCAGCGCGTGCGCCGCTGA GGCACCGAAGTACCGGTGTCCGGCCTGCGAGGCGAGGTACTGCTCGGTGG CATGCTGCAAGCGCCACAAGGAAGGAGGAGAGGACAGACCGCCCTGTTCC GGGAAGCGCGCGGCGGCCGAAGACAAACTGGCGCTCACTCGCAAACGCGC GAGGGCCACGGCGGCGCCAGCGATCCCGAAAGTCGCGCCAGCAGGGAATC CTCTGGCGCAGTGCTTGGAAGAGCAAGAGGCGGAGGCGTGGCGGCTGCAG CCGGAGCAGCGGGGCAAGCTCGCTCGCTGCGAATGGCTAAAGGCGGCGCT GAGAGATCCGAAGCTCCAGATGCTGCTCCGAGAAATCGATGGAGCCGACG ACAACGACGCCGAGCTGCGATTCGCCAGGACGAACCCGCAGTTCGCCGAA TTCGTCGATAAAATGCTCTTGGAGCTCGGCCTTCTCGTCAGGAGCGGCGT CGGTGAGCTGGAAACGACATAATAGAGAGACTCAGCAATTGGTAAACCGC TTTGACACGGCCTTCCTGTTTGAAGGGCGAAAGGCTTTCCCTTAGCATCT TTTATCTAAAACACGGCTGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1517:5133..5804+

>mRNA_P-wetherbeei_contig1517.4.1 ID=mRNA_P-wetherbeei_contig1517.4.1|Name=mRNA_P-wetherbeei_contig1517.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig1517:5133..5804+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCCCAAGCAGCAGACCGTCAAGTGCAGCGCGTGCGCCGCTGAGGC
ACCGAAGTACCGGTGTCCGGCCTGCGAGGCGAGGTACTGCTCGGTGGCAT
GCTGCAAGCGCCACAAGGAAGGAGGAGAGGACAGACCGCCCTGTTCCGGG
AAGCGCGCGGCGGCCGAAGACAAACTGGCGCTCACTCGCAAACGCGCGAG
GGCCACGGCGGCGCCAGCGATCCCGAAAGTCGCGCCAGCAGGGAATCCTC
TGGCGCAGTGCTTGGAAGAGCAAGAGGCGGAGGCGTGGCGGCTGCAGCCG
GAGCAGCGGGGCAAGCTCGCTCGCTGCGAATGGCTAAAGGCGGCGCTGAG
AGATCCGAAGCTCCAGATGCTGCTCCGAGAAATCGATGGAGCCGACGACA
ACGACGCCGAGCTGCGATTCGCCAGGACGAACCCGCAGTTCGCCGAATTC
GTCGATAAAATGCTCTTGGAGCTCGGCCTTCTCGTCAGGAGCGGCGTCGG
TGAGCTGGAAACGACATAA
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