mRNA_P-wetherbeei_contig15082.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15082.1.1
Unique NamemRNA_P-wetherbeei_contig15082.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15082.1.1 vs. uniprot
Match: A0A3C0TXK1_9PROT (Flagellar M-ring protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TXK1_9PROT)

HSP 1 Score: 230 bits (586), Expect = 8.830e-70
Identity = 112/147 (76.19%), Postives = 136/147 (92.52%), Query Frame = 3
Query:   57 DGYLDLNGFTEFLRKLGAGRLMAMGVVTAGLIAFFAYMTMQFTTQPMSLLYADLDMTDSGEILSKLEAMNIPYQLQGDGSTILVPQDQARRLRMTLAEQGIPAGGTVGYEIFDKSDMLGQTSFAQNINQLRAMEGELALTIRSISSI 497
            +G L LNGF EF RKLGAGRL+AMG+V+AGL+AFF+Y+ +QFT QPMSLL+++LDM DSGEI++KLE+M+IPYQLQGDG TILVP+D+ARRLRM LAEQ +P+GG+VGYEIFDKS++LGQTSFAQNINQLRAMEGELA TI+SIS+I
Sbjct:   20 NGTLILNGFLEFFRKLGAGRLIAMGIVSAGLLAFFSYLVLQFTAQPMSLLFSNLDMNDSGEIIAKLESMDIPYQLQGDGGTILVPRDEARRLRMLLAEQNLPSGGSVGYEIFDKSEILGQTSFAQNINQLRAMEGELARTIQSISTI 166          
BLAST of mRNA_P-wetherbeei_contig15082.1.1 vs. uniprot
Match: A0A352KCZ9_9PROT (Flagellar M-ring protein n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A352KCZ9_9PROT)

HSP 1 Score: 204 bits (519), Expect = 4.520e-60
Identity = 99/142 (69.72%), Postives = 121/142 (85.21%), Query Frame = 3
Query:   72 LNGFTEFLRKLGAGRLMAMGVVTAGLIAFFAYMTMQFTTQPMSLLYADLDMTDSGEILSKLEAMNIPYQLQGDGSTILVPQDQARRLRMTLAEQGIPAGGTVGYEIFDKSDMLGQTSFAQNINQLRAMEGELALTIRSISSI 497
            ++GF EFL KLGAGRL+AMG+VTA L+AFF +M M+FT   M+LLY++LD +DSGEI++KLEA+NIPYQLQGDG+TILVP +QARRLRM LAE G+P+G   GYE+FD S  LGQTSF QNIN++RAMEGELA TIRSI S+
Sbjct:    1 MSGFLEFLGKLGAGRLIAMGIVTAALVAFFIFMAMRFTAPSMALLYSNLDSSDSGEIIAKLEALNIPYQLQGDGTTILVPDEQARRLRMLLAEAGLPSGDNAGYELFDNSSTLGQTSFIQNINRMRAMEGELARTIRSIDSV 142          
BLAST of mRNA_P-wetherbeei_contig15082.1.1 vs. uniprot
Match: A0A2A5EJ86_9HYPH (Flagellar M-ring protein n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2A5EJ86_9HYPH)

HSP 1 Score: 179 bits (455), Expect = 9.090e-51
Identity = 85/142 (59.86%), Postives = 114/142 (80.28%), Query Frame = 3
Query:   72 LNGFTEFLRKLGAGRLMAMGVVTAGLIAFFAYMTMQFTTQPMSLLYADLDMTDSGEILSKLEAMNIPYQLQGDGSTILVPQDQARRLRMTLAEQGIPAGGTVGYEIFDKSDMLGQTSFAQNINQLRAMEGELALTIRSISSI 497
            +NGFTEF++ LG  R++++G+V AGLIAFFAY+ ++ T  PMSLLY+DL   D+ +I+++L+A  IPY+L+GDG+ I VP ++A RLRM +AEQG+P GG+VGYEIFD SD LG TSF QN+N LRA+EGELA TIR+I  I
Sbjct:    1 MNGFTEFVKTLGPARILSLGLVAAGLIAFFAYVGLRVTEAPMSLLYSDLTQEDASQIITQLDAQAIPYELRGDGTKIYVPDNRALRLRMAMAEQGLPTGGSVGYEIFDNSDALGTTSFVQNLNYLRALEGELARTIRTIDRI 142          
BLAST of mRNA_P-wetherbeei_contig15082.1.1 vs. uniprot
Match: A0A2Z4UL06_9HYPH (Flagellar M-ring protein n=3 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2Z4UL06_9HYPH)

HSP 1 Score: 175 bits (443), Expect = 5.950e-49
Identity = 81/142 (57.04%), Postives = 113/142 (79.58%), Query Frame = 3
Query:   72 LNGFTEFLRKLGAGRLMAMGVVTAGLIAFFAYMTMQFTTQPMSLLYADLDMTDSGEILSKLEAMNIPYQLQGDGSTILVPQDQARRLRMTLAEQGIPAGGTVGYEIFDKSDMLGQTSFAQNINQLRAMEGELALTIRSISSI 497
            ++ FTEFL+ LG  R++++G+V AGL AFFAY+ ++ +  PMSLLY+DL   D+ +I+S+L+A  IPY+L+GDG+ I VP D+A RLRM +AEQG+P+GG+VGYEIFD +D LG TSF QN+N LRA+EGELA TI++I  +
Sbjct:    6 VDSFTEFLKTLGPARIISLGLVAAGLFAFFAYVGLRVSESPMSLLYSDLTQEDAAQIISELDAQEIPYELKGDGTKIFVPNDRALRLRMAMAEQGLPSGGSVGYEIFDNADALGTTSFVQNLNYLRALEGELARTIKAIDRV 147          
BLAST of mRNA_P-wetherbeei_contig15082.1.1 vs. uniprot
Match: A0A2E5BV21_9HYPH (Flagellar M-ring protein n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2E5BV21_9HYPH)

HSP 1 Score: 174 bits (441), Expect = 1.250e-48
Identity = 80/142 (56.34%), Postives = 112/142 (78.87%), Query Frame = 3
Query:   72 LNGFTEFLRKLGAGRLMAMGVVTAGLIAFFAYMTMQFTTQPMSLLYADLDMTDSGEILSKLEAMNIPYQLQGDGSTILVPQDQARRLRMTLAEQGIPAGGTVGYEIFDKSDMLGQTSFAQNINQLRAMEGELALTIRSISSI 497
            ++ FTEFL+ LG  R++++G+V  GL+ FFAY+ ++ +  PMSLLYADL   D+ +I+++LE  +IPY+LQGDG+ I VP+DQA RLRM +AEQG+P+GG VGYEIFD +D LG TSF QN+N LRA+EGEL+ TI++I  +
Sbjct:    6 VDSFTEFLKSLGPARILSLGLVAIGLLGFFAYVGLRVSEAPMSLLYADLTSDDAAQIITQLETQSIPYELQGDGTKIFVPRDQALRLRMNMAEQGLPSGGAVGYEIFDNTDALGTTSFVQNLNYLRALEGELSRTIKAIDRV 147          
BLAST of mRNA_P-wetherbeei_contig15082.1.1 vs. uniprot
Match: A0A845QEB5_9HYPH (Flagellar M-ring protein n=2 Tax=Pyruvatibacter mobilis TaxID=1712261 RepID=A0A845QEB5_9HYPH)

HSP 1 Score: 172 bits (437), Expect = 5.500e-48
Identity = 83/142 (58.45%), Postives = 115/142 (80.99%), Query Frame = 3
Query:   72 LNGFTEFLRKLGAGRLMAMGVVTAGLIAFFAYMTMQFTTQPMSLLYADLDMTDSGEILSKLEAMNIPYQLQGDGSTILVPQDQARRLRMTLAEQGIPAGGTVGYEIFDKSDMLGQTSFAQNINQLRAMEGELALTIRSISSI 497
            ++G   FLR LG  RL+A+G VT  LIAFFA + M+ ++  MSLLY+DL ++DS EI++KL+ +NIPY+L+GDG+TILVP+D+A RLRM++A+ G+P+GG+VGYEIFD +  LG TSF QN+N LRA+EGELA TIR++ S+
Sbjct:    1 MDGTLGFLRGLGPMRLLALGSVTIALIAFFAVIMMRVSSPTMSLLYSDLSVSDSAEIIAKLDGLNIPYELKGDGTTILVPKDEALRLRMSMAQAGLPSGGSVGYEIFDNTSALGTTSFVQNMNHLRALEGELARTIRALDSV 142          
BLAST of mRNA_P-wetherbeei_contig15082.1.1 vs. uniprot
Match: A0A081BEL9_9HYPH (Flagellar M-ring protein n=1 Tax=Tepidicaulis marinus TaxID=1333998 RepID=A0A081BEL9_9HYPH)

HSP 1 Score: 171 bits (432), Expect = 2.280e-47
Identity = 78/142 (54.93%), Postives = 110/142 (77.46%), Query Frame = 3
Query:   72 LNGFTEFLRKLGAGRLMAMGVVTAGLIAFFAYMTMQFTTQPMSLLYADLDMTDSGEILSKLEAMNIPYQLQGDGSTILVPQDQARRLRMTLAEQGIPAGGTVGYEIFDKSDMLGQTSFAQNINQLRAMEGELALTIRSISSI 497
            +N F +FL+ LG  R+ A+G+V AGL  FFA++T++ T +PM+LLY++LD  D+  IL++L+A NIPY+L+GDG+ I VP+++  R+RM +AEQG+P G  VGYEIFD +D LG TSF QN+N LRA+EGE+A TIRSI  +
Sbjct:    1 MNSFADFLKTLGPSRIAALGLVAAGLFGFFAFVTIKVTEEPMALLYSELDQQDAAAILAELDAQNIPYELKGDGTRIFVPENRVLRMRMAMAEQGLPNGNIVGYEIFDNADALGTTSFVQNLNYLRALEGEMARTIRSIDRV 142          
BLAST of mRNA_P-wetherbeei_contig15082.1.1 vs. uniprot
Match: UPI0014225E95 (flagellar M-ring protein FliF n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI0014225E95)

HSP 1 Score: 169 bits (429), Expect = 6.760e-47
Identity = 80/142 (56.34%), Postives = 107/142 (75.35%), Query Frame = 3
Query:   72 LNGFTEFLRKLGAGRLMAMGVVTAGLIAFFAYMTMQFTTQPMSLLYADLDMTDSGEILSKLEAMNIPYQLQGDGSTILVPQDQARRLRMTLAEQGIPAGGTVGYEIFDKSDMLGQTSFAQNINQLRAMEGELALTIRSISSI 497
            +N   E L+ LG  RL  M  V AG+IAFF Y+T +  +  MSLLYADLD  DSG+I ++LE MN+PY++  DG  ILVPQDQ  R R+ +AE+G+P+GG++GYEIFD+S+ LG T+F QNIN +RA+EGELA TIRS+S++
Sbjct:    1 MNSLLETLKNLGPARLGTMAAVAAGIIAFFIYLTSRLASPEMSLLYADLDAQDSGQITARLEQMNVPYRITEDGGKILVPQDQVGRTRLVIAEEGLPSGGSIGYEIFDRSEGLGTTNFVQNINHVRALEGELARTIRSVSNV 142          
BLAST of mRNA_P-wetherbeei_contig15082.1.1 vs. uniprot
Match: A0A848Z4J6_9PROT (Flagellar M-ring protein n=1 Tax=Inquilinus sp. TaxID=1932117 RepID=A0A848Z4J6_9PROT)

HSP 1 Score: 168 bits (425), Expect = 2.390e-46
Identity = 77/142 (54.23%), Postives = 114/142 (80.28%), Query Frame = 3
Query:   72 LNGFTEFLRKLGAGRLMAMGVVTAGLIAFFAYMTMQFTTQPMSLLYADLDMTDSGEILSKLEAMNIPYQLQGDGSTILVPQDQARRLRMTLAEQGIPAGGTVGYEIFDKSDMLGQTSFAQNINQLRAMEGELALTIRSISSI 497
            ++ F++ LR LG  RL A+G V  GLIAFFA++T + +T  MSLLYADLD+TDSGEI++KL+ + +PYQ++G+G +I+VP DQ  R R+ +A++G+P GG++GYEIFD+++  G +SF QN+N+LRA+EGELA TI +I+S+
Sbjct:    1 MDAFSQTLRSLGPARLAAIGAVAIGLIAFFAFVTTRLSTGDMSLLYADLDLTDSGEIVTKLDELALPYQIRGNGGSIMVPADQVARARLLMAQEGLPKGGSLGYEIFDRTEGFGSSSFMQNVNRLRALEGELARTIGTIASV 142          
BLAST of mRNA_P-wetherbeei_contig15082.1.1 vs. uniprot
Match: A0A2A4S6X9_9HYPH (Flagellar M-ring protein n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2A4S6X9_9HYPH)

HSP 1 Score: 168 bits (425), Expect = 2.560e-46
Identity = 74/142 (52.11%), Postives = 112/142 (78.87%), Query Frame = 3
Query:   72 LNGFTEFLRKLGAGRLMAMGVVTAGLIAFFAYMTMQFTTQPMSLLYADLDMTDSGEILSKLEAMNIPYQLQGDGSTILVPQDQARRLRMTLAEQGIPAGGTVGYEIFDKSDMLGQTSFAQNINQLRAMEGELALTIRSISSI 497
            +N F EFL+ +GAGR++A+G+V   LI FFAY+T++ +   ++L+Y++L   D+ +++S+L+A+NIPY L+GDG+ I VPQD+  RLR+++AEQG+P GG+VGYEIFD +D LG TSF QN+N +RA+EGEL+ TI  I+ +
Sbjct:    1 MNSFAEFLKSMGAGRIVALGIVGMALIGFFAYVTVRISEPQLALMYSELTQDDAAQVISQLDALNIPYALRGDGTKIFVPQDKVLRLRLSMAEQGLPKGGSVGYEIFDNTDTLGVTSFVQNLNYMRALEGELSRTISEINQV 142          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15082.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TXK1_9PROT8.830e-7076.19Flagellar M-ring protein n=1 Tax=Alphaproteobacter... [more]
A0A352KCZ9_9PROT4.520e-6069.72Flagellar M-ring protein n=2 Tax=Alphaproteobacter... [more]
A0A2A5EJ86_9HYPH9.090e-5159.86Flagellar M-ring protein n=1 Tax=Rhodobiaceae bact... [more]
A0A2Z4UL06_9HYPH5.950e-4957.04Flagellar M-ring protein n=3 Tax=Hyphomicrobiales ... [more]
A0A2E5BV21_9HYPH1.250e-4856.34Flagellar M-ring protein n=1 Tax=Rhodobiaceae bact... [more]
A0A845QEB5_9HYPH5.500e-4858.45Flagellar M-ring protein n=2 Tax=Pyruvatibacter mo... [more]
A0A081BEL9_9HYPH2.280e-4754.93Flagellar M-ring protein n=1 Tax=Tepidicaulis mari... [more]
UPI0014225E956.760e-4756.34flagellar M-ring protein FliF n=1 Tax=Pelagibius l... [more]
A0A848Z4J6_9PROT2.390e-4654.23Flagellar M-ring protein n=1 Tax=Inquilinus sp. Ta... [more]
A0A2A4S6X9_9HYPH2.560e-4652.11Flagellar M-ring protein n=1 Tax=Rhodobiaceae bact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15082contigP-wetherbeei_contig15082:3..499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1282876.BAOK01000001_gene1139
Preferred namefliF
PFAMsYscJ_FliF,YscJ_FliF_C
Model size497
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02409
KEGG TC3.A.6.2,3.A.6.3
KEGG Pathwayko02040,map02040
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.92e-42
EggNOG OGsCOG1766@1|root,COG1766@2|Bacteria,1MUQR@1224|Proteobacteria,2TR6J@28211|Alphaproteobacteria,4BP7D@82117|unclassified Alphaproteobacteria
DescriptionThe M ring may be actively involved in energy transduction
Cds size378
COG categoryN
BRITEko00000,ko00001,ko02035,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186043.956814-CDS-P-wetherbeei_contig15082:2..3801683186043.956814-CDS-P-wetherbeei_contig15082:2..380Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15082 3..380 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186043.9683235-UTR-P-wetherbeei_contig15082:380..4991683186043.9683235-UTR-P-wetherbeei_contig15082:380..499Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15082 381..499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15082.1.1prot_P-wetherbeei_contig15082.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15082 3..380 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15082.1.1

>prot_P-wetherbeei_contig15082.1.1 ID=prot_P-wetherbeei_contig15082.1.1|Name=mRNA_P-wetherbeei_contig15082.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=126bp
MAMGVVTAGLIAFFAYMTMQFTTQPMSLLYADLDMTDSGEILSKLEAMNI
PYQLQGDGSTILVPQDQARRLRMTLAEQGIPAGGTVGYEIFDKSDMLGQT
SFAQNINQLRAMEGELALTIRSISSI
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mRNA from alignment at P-wetherbeei_contig15082:3..499-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15082.1.1 ID=mRNA_P-wetherbeei_contig15082.1.1|Name=mRNA_P-wetherbeei_contig15082.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=497bp|location=Sequence derived from alignment at P-wetherbeei_contig15082:3..499- (Phaeothamnion wetherbeei SAG_119_79)
CTGGGTAAATATTGCCGACATGCCAGGACGGCGCCTGGCTGACAAGCTTA CTGTGTGACGGATACCTGGATTTGAACGGATTTACAGAATTTTTACGAAA GCTGGGCGCAGGCCGCCTGATGGCGATGGGCGTTGTCACGGCTGGGCTTA TTGCGTTCTTCGCATATATGACGATGCAATTCACAACGCAGCCCATGTCC CTGCTCTATGCCGATCTTGATATGACCGATTCCGGCGAAATATTAAGCAA GCTGGAAGCGATGAATATCCCCTATCAATTGCAGGGCGATGGCAGCACGA TTTTGGTGCCCCAAGACCAGGCGCGGCGATTACGGATGACGCTTGCAGAA CAGGGAATTCCTGCAGGTGGGACCGTAGGATATGAGATATTCGACAAATC AGACATGCTGGGGCAAACCAGCTTTGCCCAGAACATAAATCAGTTACGGG CAATGGAAGGTGAATTGGCCCTCACCATCCGGTCGATTTCCAGCATT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15082:3..499-

>mRNA_P-wetherbeei_contig15082.1.1 ID=mRNA_P-wetherbeei_contig15082.1.1|Name=mRNA_P-wetherbeei_contig15082.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig15082:3..499- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGATGGGCGTTGTCACGGCTGGGCTTATTGCGTTCTTCGCATATAT
GACGATGCAATTCACAACGCAGCCCATGTCCCTGCTCTATGCCGATCTTG
ATATGACCGATTCCGGCGAAATATTAAGCAAGCTGGAAGCGATGAATATC
CCCTATCAATTGCAGGGCGATGGCAGCACGATTTTGGTGCCCCAAGACCA
GGCGCGGCGATTACGGATGACGCTTGCAGAACAGGGAATTCCTGCAGGTG
GGACCGTAGGATATGAGATATTCGACAAATCAGACATGCTGGGGCAAACC
AGCTTTGCCCAGAACATAAATCAGTTACGGGCAATGGAAGGTGAATTGGC
CCTCACCATCCGGTCGATTTCCAGCATT
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