mRNA_P-wetherbeei_contig15045.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15045.5.1
Unique NamemRNA_P-wetherbeei_contig15045.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15045.5.1 vs. uniprot
Match: A0A1Q4DAR2_9HYPH (Transcriptional regulator n=1 Tax=Rhizobiales bacterium 64-17 TaxID=1895814 RepID=A0A1Q4DAR2_9HYPH)

HSP 1 Score: 116 bits (291), Expect = 5.070e-32
Identity = 64/83 (77.11%), Postives = 71/83 (85.54%), Query Frame = 1
Query:    1 MIKLSTLHKKWMK-DPAYRKEYDALEEEFALIAAVAKARARAGLSQAELARRMKTTQGTIARLESGRGLPSTRTLGRLLRRRG 246
            MIK  TLHKKWMK D AYRKEY+ALEEEFAL AAVA+AR R+GLSQAELA+RMKTTQ T+ARLESGR +PSTRTLGR  +  G
Sbjct:    1 MIKFGTLHKKWMKQDSAYRKEYEALEEEFALAAAVARARMRSGLSQAELAKRMKTTQSTVARLESGRMMPSTRTLGRFAKATG 83          
BLAST of mRNA_P-wetherbeei_contig15045.5.1 vs. uniprot
Match: A0A345ZQM3_9HYPH (XRE family transcriptional regulator n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A345ZQM3_9HYPH)

HSP 1 Score: 112 bits (281), Expect = 1.690e-30
Identity = 63/77 (81.82%), Postives = 65/77 (84.42%), Query Frame = 1
Query:    1 MIKLSTLHKKWMKDPAYRKEYDALEEEFALIAAVAKARARAGLSQAELARRMKTTQGTIARLESGRGLPSTRTLGRL 231
            MIK STLHKKWMKDP YRKEYDALEEEFALI    +ARARAGLSQAELA+RMKTTQ  IARLESGR  PSTRTL R 
Sbjct:    1 MIKFSTLHKKWMKDPEYRKEYDALEEEFALI----EARARAGLSQAELAKRMKTTQSVIARLESGRTKPSTRTLQRF 73          
BLAST of mRNA_P-wetherbeei_contig15045.5.1 vs. uniprot
Match: A0A2R4GTD8_RHOPL (HTH cro/C1-type domain-containing protein n=6 Tax=Rhodopseudomonas TaxID=1073 RepID=A0A2R4GTD8_RHOPL)

HSP 1 Score: 109 bits (272), Expect = 3.840e-29
Identity = 58/82 (70.73%), Postives = 65/82 (79.27%), Query Frame = 1
Query:    1 MIKLSTLHKKWMKDPAYRKEYDALEEEFALIAAVAKARARAGLSQAELARRMKTTQGTIARLESGRGLPSTRTLGRLLRRRG 246
            M K+  LH+ W KDPAYR EYDAL+EEF +IA +AKAR RAGLSQAELARRM TTQ T+ARLESGRG PSTRTL R  +  G
Sbjct:    1 MTKIKDLHQAWSKDPAYRAEYDALDEEFTVIAEIAKARRRAGLSQAELARRMNTTQSTVARLESGRGQPSTRTLLRFAKATG 82          
BLAST of mRNA_P-wetherbeei_contig15045.5.1 vs. uniprot
Match: UPI0003B51CEA (helix-turn-helix transcriptional regulator n=1 Tax=Rhodopseudomonas sp. B29 TaxID=95607 RepID=UPI0003B51CEA)

HSP 1 Score: 107 bits (266), Expect = 3.140e-28
Identity = 58/82 (70.73%), Postives = 65/82 (79.27%), Query Frame = 1
Query:    1 MIKLSTLHKKWMKDPAYRKEYDALEEEFALIAAVAKARARAGLSQAELARRMKTTQGTIARLESGRGLPSTRTLGRLLRRRG 246
            M K+  LHK W KDPAYR  YDALE+EF+++AA+AKAR RAGLSQAELARRM TTQ T ARLESGRG PSTRTL R  +  G
Sbjct:    1 MTKVKDLHKAWSKDPAYRAAYDALEDEFSVMAAIAKARRRAGLSQAELARRMNTTQSTWARLESGRGQPSTRTLLRFAKATG 82          
BLAST of mRNA_P-wetherbeei_contig15045.5.1 vs. uniprot
Match: UPI0019CD5FE3 (Helix-turn-helix transcriptional regulator n=1 Tax=Tardiphaga sp. TaxID=1926292 RepID=UPI0019CD5FE3)

HSP 1 Score: 100 bits (249), Expect = 1.210e-25
Identity = 54/82 (65.85%), Postives = 62/82 (75.61%), Query Frame = 1
Query:    1 MIKLSTLHKKWMKDPAYRKEYDALEEEFALIAAVAKARARAGLSQAELARRMKTTQGTIARLESGRGLPSTRTLGRLLRRRG 246
            M K+  LHK W KDP Y K+Y ALEEEF ++AA+AKAR R+GLSQ ELARRM TTQ T+ARLESGRG PST TL R  +  G
Sbjct:    1 MTKIKDLHKTWSKDPDYLKDYQALEEEFTVMAAIAKARRRSGLSQTELARRMNTTQSTMARLESGRGQPSTWTLVRFAKATG 82          
BLAST of mRNA_P-wetherbeei_contig15045.5.1 vs. uniprot
Match: UPI001F3EB2CF (helix-turn-helix transcriptional regulator n=1 Tax=Pseudacidovorax sp. NFM-22 TaxID=2744469 RepID=UPI001F3EB2CF)

HSP 1 Score: 99.4 bits (246), Expect = 3.370e-25
Identity = 52/74 (70.27%), Postives = 60/74 (81.08%), Query Frame = 1
Query:    1 MIKLSTLHKKWMKDPAYRKEYDALEEEFALIAAVAKARARAGLSQAELARRMKTTQGTIARLESGRGLPSTRTL 222
            M KL  LH KW KDPAYR+ YDALEEEFAL  A+A+ARA AGL+QAE+A RM+TTQ  IAR+E+GR  PSTRTL
Sbjct:    1 MTKLKDLHGKWSKDPAYREAYDALEEEFALAEAIAEARAAAGLTQAEVAERMQTTQSNIARMEAGRSSPSTRTL 74          
BLAST of mRNA_P-wetherbeei_contig15045.5.1 vs. uniprot
Match: A0A8B5WV80_9GAMM (XRE family transcriptional regulator n=1 Tax=Candidatus Competibacteraceae bacterium TaxID=2053538 RepID=A0A8B5WV80_9GAMM)

HSP 1 Score: 99.0 bits (245), Expect = 5.210e-25
Identity = 52/82 (63.41%), Postives = 64/82 (78.05%), Query Frame = 1
Query:    1 MIKLSTLHKKWMKDPAYRKEYDALEEEFALIAAVAKARARAGLSQAELARRMKTTQGTIARLESGRGLPSTRTLGRLLRRRG 246
            M K+  LH+KWM DPAYR+ Y+ALEEEF L +A+ +ARARAG++Q ELARRM+TTQ T+ARLE GR  PSTRTL R  +  G
Sbjct:    1 MTKVRDLHEKWMDDPAYREAYEALEEEFTLASALIEARARAGITQEELARRMETTQSTVARLEGGRVRPSTRTLERFAKATG 82          
BLAST of mRNA_P-wetherbeei_contig15045.5.1 vs. uniprot
Match: A0A5C7ZV92_9FLAO (XRE family transcriptional regulator n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A5C7ZV92_9FLAO)

HSP 1 Score: 96.7 bits (239), Expect = 3.910e-24
Identity = 50/74 (67.57%), Postives = 59/74 (79.73%), Query Frame = 1
Query:    1 MIKLSTLHKKWMKDPAYRKEYDALEEEFALIAAVAKARARAGLSQAELARRMKTTQGTIARLESGRGLPSTRTL 222
            M KL  LH KW K+P+YRK YDAL+EEFAL  A+A+AR RAGL+QAE+A RM TTQ  IAR+E+GR  PSTRTL
Sbjct:    1 MTKLRDLHTKWSKEPSYRKAYDALDEEFALAEAIAEARGRAGLTQAEVAERMHTTQSNIARMEAGRTTPSTRTL 74          
BLAST of mRNA_P-wetherbeei_contig15045.5.1 vs. uniprot
Match: A0A4R3EM38_9HYPH (Xre family transcriptional regulator n=2 Tax=Rhizobium/Agrobacterium group TaxID=227290 RepID=A0A4R3EM38_9HYPH)

HSP 1 Score: 96.3 bits (238), Expect = 6.210e-24
Identity = 54/82 (65.85%), Postives = 59/82 (71.95%), Query Frame = 1
Query:    1 MIKLSTLHKKWMKDPAYRKEYDALEEEFALIAAVAKARARAGLSQAELARRMKTTQGTIARLESGRGLPSTRTLGRLLRRRG 246
            M K+  LH +WMKD  YRKEYDALEEEFAL  AV KAR  AGL+Q ELARRM T+Q  IARLESGR  PS RTL R  +  G
Sbjct:    1 MTKMKDLHAEWMKDADYRKEYDALEEEFALAEAVIKARVNAGLTQEELARRMDTSQSAIARLESGRMKPSARTLERFAKATG 82          
BLAST of mRNA_P-wetherbeei_contig15045.5.1 vs. uniprot
Match: A0A564ZH50_9BACT (Transcriptional regulator n=1 Tax=Candidatus Methylomirabilis lanthanidiphila TaxID=2211376 RepID=A0A564ZH50_9BACT)

HSP 1 Score: 95.9 bits (237), Expect = 8.810e-24
Identity = 52/77 (67.53%), Postives = 61/77 (79.22%), Query Frame = 1
Query:    1 MIKLSTLHKKWMKDPAYRKEYDALEEEFALIAAVAKARARAGLSQAELARRMKTTQGTIARLESGRGLPSTRTLGRL 231
            M ++S  HK+WMKDP YRK Y ALEEEFAL +AV +AR+RAGL+Q ELAR+M TTQ  +ARLESGR  PS RTL RL
Sbjct:    1 MARISDSHKRWMKDPKYRKAYMALEEEFALASAVIEARSRAGLTQQELARKMGTTQPVVARLESGRTRPSMRTLERL 77          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15045.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Q4DAR2_9HYPH5.070e-3277.11Transcriptional regulator n=1 Tax=Rhizobiales bact... [more]
A0A345ZQM3_9HYPH1.690e-3081.82XRE family transcriptional regulator n=1 Tax=Pseud... [more]
A0A2R4GTD8_RHOPL3.840e-2970.73HTH cro/C1-type domain-containing protein n=6 Tax=... [more]
UPI0003B51CEA3.140e-2870.73helix-turn-helix transcriptional regulator n=1 Tax... [more]
UPI0019CD5FE31.210e-2565.85Helix-turn-helix transcriptional regulator n=1 Tax... [more]
UPI001F3EB2CF3.370e-2570.27helix-turn-helix transcriptional regulator n=1 Tax... [more]
A0A8B5WV80_9GAMM5.210e-2563.41XRE family transcriptional regulator n=1 Tax=Candi... [more]
A0A5C7ZV92_9FLAO3.910e-2467.57XRE family transcriptional regulator n=1 Tax=Flavo... [more]
A0A4R3EM38_9HYPH6.210e-2465.85Xre family transcriptional regulator n=2 Tax=Rhizo... [more]
A0A564ZH50_9BACT8.810e-2467.53Transcriptional regulator n=1 Tax=Candidatus Methy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15045contigP-wetherbeei_contig15045:1135..1433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog652103.Rpdx1_3362
PFAMsHTH_3,HTH_31
Model size299
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.55e-30
EggNOG OGsCOG3620@1|root,COG3620@2|Bacteria,1N84U@1224|Proteobacteria,2TWPS@28211|Alphaproteobacteria,3JZE2@41294|Bradyrhizobiaceae
DescriptionHelix-turn-helix domain
Cds size255
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186042.7594829-CDS-P-wetherbeei_contig15045:1134..13891683186042.7594829-CDS-P-wetherbeei_contig15045:1134..1389Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15045 1135..1389 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186042.7700999-UTR-P-wetherbeei_contig15045:1389..14331683186042.7700999-UTR-P-wetherbeei_contig15045:1389..1433Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15045 1390..1433 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15045.5.1prot_P-wetherbeei_contig15045.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15045 1135..1389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15045.5.1

>prot_P-wetherbeei_contig15045.5.1 ID=prot_P-wetherbeei_contig15045.5.1|Name=mRNA_P-wetherbeei_contig15045.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=85bp
MIKLSTLHKKWMKDPAYRKEYDALEEEFALIAAVAKARARAGLSQAELAR
RMKTTQGTIARLESGRGLPSTRTLGRLLRRRGIG*
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mRNA from alignment at P-wetherbeei_contig15045:1135..1433+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15045.5.1 ID=mRNA_P-wetherbeei_contig15045.5.1|Name=mRNA_P-wetherbeei_contig15045.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=299bp|location=Sequence derived from alignment at P-wetherbeei_contig15045:1135..1433+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATCAAACTCAGCACGCTGCACAAGAAATGGATGAAGGACCCGGCGTA CCGCAAGGAGTACGACGCGCTGGAGGAGGAGTTTGCGCTGATCGCCGCAG TGGCCAAGGCGCGCGCCCGCGCGGGCCTGAGTCAGGCGGAACTGGCGCGG CGCATGAAGACGACGCAGGGCACGATCGCGCGGCTTGAGAGCGGACGCGG GTTGCCGTCGACGCGCACGCTTGGACGGTTGCTGAGGCGACGGGGCATCG GCTGAAGAGCAGCTTCGAGCCGGTGAGGCGAAGCCGCAGGGCGGGTAAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15045:1135..1433+

>mRNA_P-wetherbeei_contig15045.5.1 ID=mRNA_P-wetherbeei_contig15045.5.1|Name=mRNA_P-wetherbeei_contig15045.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig15045:1135..1433+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATCAAACTCAGCACGCTGCACAAGAAATGGATGAAGGACCCGGCGTA
CCGCAAGGAGTACGACGCGCTGGAGGAGGAGTTTGCGCTGATCGCCGCAG
TGGCCAAGGCGCGCGCCCGCGCGGGCCTGAGTCAGGCGGAACTGGCGCGG
CGCATGAAGACGACGCAGGGCACGATCGCGCGGCTTGAGAGCGGACGCGG
GTTGCCGTCGACGCGCACGCTTGGACGGTTGCTGAGGCGACGGGGCATCG
GCTGA
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