prot_P-wetherbeei_contig15045.5.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig15045.5.1
Unique Nameprot_P-wetherbeei_contig15045.5.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length85
Homology
BLAST of mRNA_P-wetherbeei_contig15045.5.1 vs. uniprot
Match: A0A1Q4DAR2_9HYPH (Transcriptional regulator n=1 Tax=Rhizobiales bacterium 64-17 TaxID=1895814 RepID=A0A1Q4DAR2_9HYPH)

HSP 1 Score: 115 bits (289), Expect = 5.840e-32
Identity = 64/83 (77.11%), Postives = 71/83 (85.54%), Query Frame = 0
Query:    1 MIKLSTLHKKWMK-DPAYRKEYDALEEEFALIAAVAKARARAGLSQAELARRMKTTQGTIARLESGRGLPSTRTLGRLLRRRG 82
            MIK  TLHKKWMK D AYRKEY+ALEEEFAL AAVA+AR R+GLSQAELA+RMKTTQ T+ARLESGR +PSTRTLGR  +  G
Sbjct:    1 MIKFGTLHKKWMKQDSAYRKEYEALEEEFALAAAVARARMRSGLSQAELAKRMKTTQSTVARLESGRMMPSTRTLGRFAKATG 83          
BLAST of mRNA_P-wetherbeei_contig15045.5.1 vs. uniprot
Match: A0A345ZQM3_9HYPH (XRE family transcriptional regulator n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A345ZQM3_9HYPH)

HSP 1 Score: 112 bits (279), Expect = 1.950e-30
Identity = 63/76 (82.89%), Postives = 65/76 (85.53%), Query Frame = 0
Query:    1 MIKLSTLHKKWMKDPAYRKEYDALEEEFALIAAVAKARARAGLSQAELARRMKTTQGTIARLESGRGLPSTRTLGR 76
            MIK STLHKKWMKDP YRKEYDALEEEFALI    +ARARAGLSQAELA+RMKTTQ  IARLESGR  PSTRTL R
Sbjct:    1 MIKFSTLHKKWMKDPEYRKEYDALEEEFALI----EARARAGLSQAELAKRMKTTQSVIARLESGRTKPSTRTLQR 72          
BLAST of mRNA_P-wetherbeei_contig15045.5.1 vs. uniprot
Match: A0A2R4GTD8_RHOPL (HTH cro/C1-type domain-containing protein n=6 Tax=Rhodopseudomonas TaxID=1073 RepID=A0A2R4GTD8_RHOPL)

HSP 1 Score: 108 bits (270), Expect = 4.450e-29
Identity = 58/82 (70.73%), Postives = 65/82 (79.27%), Query Frame = 0
Query:    1 MIKLSTLHKKWMKDPAYRKEYDALEEEFALIAAVAKARARAGLSQAELARRMKTTQGTIARLESGRGLPSTRTLGRLLRRRG 82
            M K+  LH+ W KDPAYR EYDAL+EEF +IA +AKAR RAGLSQAELARRM TTQ T+ARLESGRG PSTRTL R  +  G
Sbjct:    1 MTKIKDLHQAWSKDPAYRAEYDALDEEFTVIAEIAKARRRAGLSQAELARRMNTTQSTVARLESGRGQPSTRTLLRFAKATG 82          
BLAST of mRNA_P-wetherbeei_contig15045.5.1 vs. uniprot
Match: UPI0003B51CEA (helix-turn-helix transcriptional regulator n=1 Tax=Rhodopseudomonas sp. B29 TaxID=95607 RepID=UPI0003B51CEA)

HSP 1 Score: 106 bits (264), Expect = 3.650e-28
Identity = 58/82 (70.73%), Postives = 65/82 (79.27%), Query Frame = 0
Query:    1 MIKLSTLHKKWMKDPAYRKEYDALEEEFALIAAVAKARARAGLSQAELARRMKTTQGTIARLESGRGLPSTRTLGRLLRRRG 82
            M K+  LHK W KDPAYR  YDALE+EF+++AA+AKAR RAGLSQAELARRM TTQ T ARLESGRG PSTRTL R  +  G
Sbjct:    1 MTKVKDLHKAWSKDPAYRAAYDALEDEFSVMAAIAKARRRAGLSQAELARRMNTTQSTWARLESGRGQPSTRTLLRFAKATG 82          
BLAST of mRNA_P-wetherbeei_contig15045.5.1 vs. uniprot
Match: UPI0019CD5FE3 (Helix-turn-helix transcriptional regulator n=1 Tax=Tardiphaga sp. TaxID=1926292 RepID=UPI0019CD5FE3)

HSP 1 Score: 99.8 bits (247), Expect = 1.410e-25
Identity = 54/82 (65.85%), Postives = 62/82 (75.61%), Query Frame = 0
Query:    1 MIKLSTLHKKWMKDPAYRKEYDALEEEFALIAAVAKARARAGLSQAELARRMKTTQGTIARLESGRGLPSTRTLGRLLRRRG 82
            M K+  LHK W KDP Y K+Y ALEEEF ++AA+AKAR R+GLSQ ELARRM TTQ T+ARLESGRG PST TL R  +  G
Sbjct:    1 MTKIKDLHKTWSKDPDYLKDYQALEEEFTVMAAIAKARRRSGLSQTELARRMNTTQSTMARLESGRGQPSTWTLVRFAKATG 82          
BLAST of mRNA_P-wetherbeei_contig15045.5.1 vs. uniprot
Match: UPI001F3EB2CF (helix-turn-helix transcriptional regulator n=1 Tax=Pseudacidovorax sp. NFM-22 TaxID=2744469 RepID=UPI001F3EB2CF)

HSP 1 Score: 99.0 bits (245), Expect = 2.770e-25
Identity = 52/74 (70.27%), Postives = 60/74 (81.08%), Query Frame = 0
Query:    1 MIKLSTLHKKWMKDPAYRKEYDALEEEFALIAAVAKARARAGLSQAELARRMKTTQGTIARLESGRGLPSTRTL 74
            M KL  LH KW KDPAYR+ YDALEEEFAL  A+A+ARA AGL+QAE+A RM+TTQ  IAR+E+GR  PSTRTL
Sbjct:    1 MTKLKDLHGKWSKDPAYREAYDALEEEFALAEAIAEARAAAGLTQAEVAERMQTTQSNIARMEAGRSSPSTRTL 74          
BLAST of mRNA_P-wetherbeei_contig15045.5.1 vs. uniprot
Match: A0A8B5WV80_9GAMM (XRE family transcriptional regulator n=1 Tax=Candidatus Competibacteraceae bacterium TaxID=2053538 RepID=A0A8B5WV80_9GAMM)

HSP 1 Score: 98.2 bits (243), Expect = 6.070e-25
Identity = 52/82 (63.41%), Postives = 64/82 (78.05%), Query Frame = 0
Query:    1 MIKLSTLHKKWMKDPAYRKEYDALEEEFALIAAVAKARARAGLSQAELARRMKTTQGTIARLESGRGLPSTRTLGRLLRRRG 82
            M K+  LH+KWM DPAYR+ Y+ALEEEF L +A+ +ARARAG++Q ELARRM+TTQ T+ARLE GR  PSTRTL R  +  G
Sbjct:    1 MTKVRDLHEKWMDDPAYREAYEALEEEFTLASALIEARARAGITQEELARRMETTQSTVARLEGGRVRPSTRTLERFAKATG 82          
BLAST of mRNA_P-wetherbeei_contig15045.5.1 vs. uniprot
Match: A0A5C7ZV92_9FLAO (XRE family transcriptional regulator n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A5C7ZV92_9FLAO)

HSP 1 Score: 96.3 bits (238), Expect = 3.220e-24
Identity = 50/74 (67.57%), Postives = 59/74 (79.73%), Query Frame = 0
Query:    1 MIKLSTLHKKWMKDPAYRKEYDALEEEFALIAAVAKARARAGLSQAELARRMKTTQGTIARLESGRGLPSTRTL 74
            M KL  LH KW K+P+YRK YDAL+EEFAL  A+A+AR RAGL+QAE+A RM TTQ  IAR+E+GR  PSTRTL
Sbjct:    1 MTKLRDLHTKWSKEPSYRKAYDALDEEFALAEAIAEARGRAGLTQAEVAERMHTTQSNIARMEAGRTTPSTRTL 74          
BLAST of mRNA_P-wetherbeei_contig15045.5.1 vs. uniprot
Match: A0A4R3EM38_9HYPH (Xre family transcriptional regulator n=2 Tax=Rhizobium/Agrobacterium group TaxID=227290 RepID=A0A4R3EM38_9HYPH)

HSP 1 Score: 95.5 bits (236), Expect = 7.260e-24
Identity = 54/82 (65.85%), Postives = 59/82 (71.95%), Query Frame = 0
Query:    1 MIKLSTLHKKWMKDPAYRKEYDALEEEFALIAAVAKARARAGLSQAELARRMKTTQGTIARLESGRGLPSTRTLGRLLRRRG 82
            M K+  LH +WMKD  YRKEYDALEEEFAL  AV KAR  AGL+Q ELARRM T+Q  IARLESGR  PS RTL R  +  G
Sbjct:    1 MTKMKDLHAEWMKDADYRKEYDALEEEFALAEAVIKARVNAGLTQEELARRMDTSQSAIARLESGRMKPSARTLERFAKATG 82          
BLAST of mRNA_P-wetherbeei_contig15045.5.1 vs. uniprot
Match: A0A564ZH50_9BACT (Transcriptional regulator n=1 Tax=Candidatus Methylomirabilis lanthanidiphila TaxID=2211376 RepID=A0A564ZH50_9BACT)

HSP 1 Score: 95.1 bits (235), Expect = 1.030e-23
Identity = 52/77 (67.53%), Postives = 61/77 (79.22%), Query Frame = 0
Query:    1 MIKLSTLHKKWMKDPAYRKEYDALEEEFALIAAVAKARARAGLSQAELARRMKTTQGTIARLESGRGLPSTRTLGRL 77
            M ++S  HK+WMKDP YRK Y ALEEEFAL +AV +AR+RAGL+Q ELAR+M TTQ  +ARLESGR  PS RTL RL
Sbjct:    1 MARISDSHKRWMKDPKYRKAYMALEEEFALASAVIEARSRAGLTQQELARKMGTTQPVVARLESGRTRPSMRTLERL 77          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15045.5.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Q4DAR2_9HYPH5.840e-3277.11Transcriptional regulator n=1 Tax=Rhizobiales bact... [more]
A0A345ZQM3_9HYPH1.950e-3082.89XRE family transcriptional regulator n=1 Tax=Pseud... [more]
A0A2R4GTD8_RHOPL4.450e-2970.73HTH cro/C1-type domain-containing protein n=6 Tax=... [more]
UPI0003B51CEA3.650e-2870.73helix-turn-helix transcriptional regulator n=1 Tax... [more]
UPI0019CD5FE31.410e-2565.85Helix-turn-helix transcriptional regulator n=1 Tax... [more]
UPI001F3EB2CF2.770e-2570.27helix-turn-helix transcriptional regulator n=1 Tax... [more]
A0A8B5WV80_9GAMM6.070e-2563.41XRE family transcriptional regulator n=1 Tax=Candi... [more]
A0A5C7ZV92_9FLAO3.220e-2467.57XRE family transcriptional regulator n=1 Tax=Flavo... [more]
A0A4R3EM38_9HYPH7.260e-2465.85Xre family transcriptional regulator n=2 Tax=Rhizo... [more]
A0A564ZH50_9BACT1.030e-2367.53Transcriptional regulator n=1 Tax=Candidatus Methy... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001387Cro/C1-type helix-turn-helix domainSMARTSM00530mbf_short4coord: 33..83
e-value: 1.3E-4
score: 31.4
IPR001387Cro/C1-type helix-turn-helix domainPFAMPF01381HTH_3coord: 35..79
e-value: 3.6E-10
score: 39.7
IPR001387Cro/C1-type helix-turn-helix domainPROSITEPS50943HTH_CROC1coord: 34..77
score: 11.892168
IPR001387Cro/C1-type helix-turn-helix domainCDDcd00093HTH_XREcoord: 42..70
e-value: 1.28347E-5
score: 37.1474
IPR010982Lambda repressor-like, DNA-binding domain superfamilyGENE3D1.10.260.40coord: 21..83
e-value: 4.3E-12
score: 47.5
IPR010982Lambda repressor-like, DNA-binding domain superfamilySUPERFAMILY47413lambda repressor-like DNA-binding domainscoord: 20..82

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15045contigP-wetherbeei_contig15045:1135..1389 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15045.5.1mRNA_P-wetherbeei_contig15045.5.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig15045 1135..1433 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig15045.5.1 ID=prot_P-wetherbeei_contig15045.5.1|Name=mRNA_P-wetherbeei_contig15045.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=85bp
MIKLSTLHKKWMKDPAYRKEYDALEEEFALIAAVAKARARAGLSQAELAR
RMKTTQGTIARLESGRGLPSTRTLGRLLRRRGIG*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001387Cro/C1-type_HTH
IPR010982Lambda_DNA-bd_dom_sf