mRNA_P-wetherbeei_contig15045.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig15045.5.1 vs. uniprot
Match: A0A1Q4DAR2_9HYPH (Transcriptional regulator n=1 Tax=Rhizobiales bacterium 64-17 TaxID=1895814 RepID=A0A1Q4DAR2_9HYPH) HSP 1 Score: 116 bits (291), Expect = 5.070e-32 Identity = 64/83 (77.11%), Postives = 71/83 (85.54%), Query Frame = 1
Query: 1 MIKLSTLHKKWMK-DPAYRKEYDALEEEFALIAAVAKARARAGLSQAELARRMKTTQGTIARLESGRGLPSTRTLGRLLRRRG 246
MIK TLHKKWMK D AYRKEY+ALEEEFAL AAVA+AR R+GLSQAELA+RMKTTQ T+ARLESGR +PSTRTLGR + G
Sbjct: 1 MIKFGTLHKKWMKQDSAYRKEYEALEEEFALAAAVARARMRSGLSQAELAKRMKTTQSTVARLESGRMMPSTRTLGRFAKATG 83
BLAST of mRNA_P-wetherbeei_contig15045.5.1 vs. uniprot
Match: A0A345ZQM3_9HYPH (XRE family transcriptional regulator n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A345ZQM3_9HYPH) HSP 1 Score: 112 bits (281), Expect = 1.690e-30 Identity = 63/77 (81.82%), Postives = 65/77 (84.42%), Query Frame = 1
Query: 1 MIKLSTLHKKWMKDPAYRKEYDALEEEFALIAAVAKARARAGLSQAELARRMKTTQGTIARLESGRGLPSTRTLGRL 231
MIK STLHKKWMKDP YRKEYDALEEEFALI +ARARAGLSQAELA+RMKTTQ IARLESGR PSTRTL R
Sbjct: 1 MIKFSTLHKKWMKDPEYRKEYDALEEEFALI----EARARAGLSQAELAKRMKTTQSVIARLESGRTKPSTRTLQRF 73
BLAST of mRNA_P-wetherbeei_contig15045.5.1 vs. uniprot
Match: A0A2R4GTD8_RHOPL (HTH cro/C1-type domain-containing protein n=6 Tax=Rhodopseudomonas TaxID=1073 RepID=A0A2R4GTD8_RHOPL) HSP 1 Score: 109 bits (272), Expect = 3.840e-29 Identity = 58/82 (70.73%), Postives = 65/82 (79.27%), Query Frame = 1
Query: 1 MIKLSTLHKKWMKDPAYRKEYDALEEEFALIAAVAKARARAGLSQAELARRMKTTQGTIARLESGRGLPSTRTLGRLLRRRG 246
M K+ LH+ W KDPAYR EYDAL+EEF +IA +AKAR RAGLSQAELARRM TTQ T+ARLESGRG PSTRTL R + G
Sbjct: 1 MTKIKDLHQAWSKDPAYRAEYDALDEEFTVIAEIAKARRRAGLSQAELARRMNTTQSTVARLESGRGQPSTRTLLRFAKATG 82
BLAST of mRNA_P-wetherbeei_contig15045.5.1 vs. uniprot
Match: UPI0003B51CEA (helix-turn-helix transcriptional regulator n=1 Tax=Rhodopseudomonas sp. B29 TaxID=95607 RepID=UPI0003B51CEA) HSP 1 Score: 107 bits (266), Expect = 3.140e-28 Identity = 58/82 (70.73%), Postives = 65/82 (79.27%), Query Frame = 1
Query: 1 MIKLSTLHKKWMKDPAYRKEYDALEEEFALIAAVAKARARAGLSQAELARRMKTTQGTIARLESGRGLPSTRTLGRLLRRRG 246
M K+ LHK W KDPAYR YDALE+EF+++AA+AKAR RAGLSQAELARRM TTQ T ARLESGRG PSTRTL R + G
Sbjct: 1 MTKVKDLHKAWSKDPAYRAAYDALEDEFSVMAAIAKARRRAGLSQAELARRMNTTQSTWARLESGRGQPSTRTLLRFAKATG 82
BLAST of mRNA_P-wetherbeei_contig15045.5.1 vs. uniprot
Match: UPI0019CD5FE3 (Helix-turn-helix transcriptional regulator n=1 Tax=Tardiphaga sp. TaxID=1926292 RepID=UPI0019CD5FE3) HSP 1 Score: 100 bits (249), Expect = 1.210e-25 Identity = 54/82 (65.85%), Postives = 62/82 (75.61%), Query Frame = 1
Query: 1 MIKLSTLHKKWMKDPAYRKEYDALEEEFALIAAVAKARARAGLSQAELARRMKTTQGTIARLESGRGLPSTRTLGRLLRRRG 246
M K+ LHK W KDP Y K+Y ALEEEF ++AA+AKAR R+GLSQ ELARRM TTQ T+ARLESGRG PST TL R + G
Sbjct: 1 MTKIKDLHKTWSKDPDYLKDYQALEEEFTVMAAIAKARRRSGLSQTELARRMNTTQSTMARLESGRGQPSTWTLVRFAKATG 82
BLAST of mRNA_P-wetherbeei_contig15045.5.1 vs. uniprot
Match: UPI001F3EB2CF (helix-turn-helix transcriptional regulator n=1 Tax=Pseudacidovorax sp. NFM-22 TaxID=2744469 RepID=UPI001F3EB2CF) HSP 1 Score: 99.4 bits (246), Expect = 3.370e-25 Identity = 52/74 (70.27%), Postives = 60/74 (81.08%), Query Frame = 1
Query: 1 MIKLSTLHKKWMKDPAYRKEYDALEEEFALIAAVAKARARAGLSQAELARRMKTTQGTIARLESGRGLPSTRTL 222
M KL LH KW KDPAYR+ YDALEEEFAL A+A+ARA AGL+QAE+A RM+TTQ IAR+E+GR PSTRTL
Sbjct: 1 MTKLKDLHGKWSKDPAYREAYDALEEEFALAEAIAEARAAAGLTQAEVAERMQTTQSNIARMEAGRSSPSTRTL 74
BLAST of mRNA_P-wetherbeei_contig15045.5.1 vs. uniprot
Match: A0A8B5WV80_9GAMM (XRE family transcriptional regulator n=1 Tax=Candidatus Competibacteraceae bacterium TaxID=2053538 RepID=A0A8B5WV80_9GAMM) HSP 1 Score: 99.0 bits (245), Expect = 5.210e-25 Identity = 52/82 (63.41%), Postives = 64/82 (78.05%), Query Frame = 1
Query: 1 MIKLSTLHKKWMKDPAYRKEYDALEEEFALIAAVAKARARAGLSQAELARRMKTTQGTIARLESGRGLPSTRTLGRLLRRRG 246
M K+ LH+KWM DPAYR+ Y+ALEEEF L +A+ +ARARAG++Q ELARRM+TTQ T+ARLE GR PSTRTL R + G
Sbjct: 1 MTKVRDLHEKWMDDPAYREAYEALEEEFTLASALIEARARAGITQEELARRMETTQSTVARLEGGRVRPSTRTLERFAKATG 82
BLAST of mRNA_P-wetherbeei_contig15045.5.1 vs. uniprot
Match: A0A5C7ZV92_9FLAO (XRE family transcriptional regulator n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A5C7ZV92_9FLAO) HSP 1 Score: 96.7 bits (239), Expect = 3.910e-24 Identity = 50/74 (67.57%), Postives = 59/74 (79.73%), Query Frame = 1
Query: 1 MIKLSTLHKKWMKDPAYRKEYDALEEEFALIAAVAKARARAGLSQAELARRMKTTQGTIARLESGRGLPSTRTL 222
M KL LH KW K+P+YRK YDAL+EEFAL A+A+AR RAGL+QAE+A RM TTQ IAR+E+GR PSTRTL
Sbjct: 1 MTKLRDLHTKWSKEPSYRKAYDALDEEFALAEAIAEARGRAGLTQAEVAERMHTTQSNIARMEAGRTTPSTRTL 74
BLAST of mRNA_P-wetherbeei_contig15045.5.1 vs. uniprot
Match: A0A4R3EM38_9HYPH (Xre family transcriptional regulator n=2 Tax=Rhizobium/Agrobacterium group TaxID=227290 RepID=A0A4R3EM38_9HYPH) HSP 1 Score: 96.3 bits (238), Expect = 6.210e-24 Identity = 54/82 (65.85%), Postives = 59/82 (71.95%), Query Frame = 1
Query: 1 MIKLSTLHKKWMKDPAYRKEYDALEEEFALIAAVAKARARAGLSQAELARRMKTTQGTIARLESGRGLPSTRTLGRLLRRRG 246
M K+ LH +WMKD YRKEYDALEEEFAL AV KAR AGL+Q ELARRM T+Q IARLESGR PS RTL R + G
Sbjct: 1 MTKMKDLHAEWMKDADYRKEYDALEEEFALAEAVIKARVNAGLTQEELARRMDTSQSAIARLESGRMKPSARTLERFAKATG 82
BLAST of mRNA_P-wetherbeei_contig15045.5.1 vs. uniprot
Match: A0A564ZH50_9BACT (Transcriptional regulator n=1 Tax=Candidatus Methylomirabilis lanthanidiphila TaxID=2211376 RepID=A0A564ZH50_9BACT) HSP 1 Score: 95.9 bits (237), Expect = 8.810e-24 Identity = 52/77 (67.53%), Postives = 61/77 (79.22%), Query Frame = 1
Query: 1 MIKLSTLHKKWMKDPAYRKEYDALEEEFALIAAVAKARARAGLSQAELARRMKTTQGTIARLESGRGLPSTRTLGRL 231
M ++S HK+WMKDP YRK Y ALEEEFAL +AV +AR+RAGL+Q ELAR+M TTQ +ARLESGR PS RTL RL
Sbjct: 1 MARISDSHKRWMKDPKYRKAYMALEEEFALASAVIEARSRAGLTQQELARKMGTTQPVVARLESGRTRPSMRTLERL 77 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15045.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig15045.5.1 >prot_P-wetherbeei_contig15045.5.1 ID=prot_P-wetherbeei_contig15045.5.1|Name=mRNA_P-wetherbeei_contig15045.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=85bp MIKLSTLHKKWMKDPAYRKEYDALEEEFALIAAVAKARARAGLSQAELARback to top mRNA from alignment at P-wetherbeei_contig15045:1135..1433+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig15045.5.1 ID=mRNA_P-wetherbeei_contig15045.5.1|Name=mRNA_P-wetherbeei_contig15045.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=299bp|location=Sequence derived from alignment at P-wetherbeei_contig15045:1135..1433+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig15045:1135..1433+ >mRNA_P-wetherbeei_contig15045.5.1 ID=mRNA_P-wetherbeei_contig15045.5.1|Name=mRNA_P-wetherbeei_contig15045.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig15045:1135..1433+ (Phaeothamnion wetherbeei SAG_119_79)back to top |