mRNA_P-wetherbeei_contig150.7.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig150.7.1
Unique NamemRNA_P-wetherbeei_contig150.7.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig150.7.1 vs. uniprot
Match: A0A6H5KB20_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB20_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 8.410e-30
Identity = 57/88 (64.77%), Postives = 70/88 (79.55%), Query Frame = 1
Query:    1 HAACEQWVVFSDLHVSTASLDICLQARMVLDVVHEEAMRRPNCGIAFLGDFWQARGTIKVELLNAVMNRLSRWQRPVIMIPGNHDQVS 264
            H   ++W+VFSDLHVS ASL + L+   VLD V+EEAM+R  CGIAFLGDFW ARG++KV+LL  VM RL+ W RPV+MIPGNHDQV+
Sbjct:  375 HVTMKEWLVFSDLHVSPASLAVSLE---VLDRVNEEAMKRSACGIAFLGDFWHARGSLKVDLLVPVMERLATWTRPVVMIPGNHDQVT 459          
BLAST of mRNA_P-wetherbeei_contig150.7.1 vs. uniprot
Match: D7FQ73_ECTSI (DNA double-strand break repair rad50 ATPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ73_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 1.150e-29
Identity = 57/88 (64.77%), Postives = 70/88 (79.55%), Query Frame = 1
Query:    1 HAACEQWVVFSDLHVSTASLDICLQARMVLDVVHEEAMRRPNCGIAFLGDFWQARGTIKVELLNAVMNRLSRWQRPVIMIPGNHDQVS 264
            HA  ++W+VFSDLHVS ASL + L+   VLD V+EEAM+R  CGIAFLGDFW ARG++KV+LL  VM  L+ W RPV+MIPGNHDQV+
Sbjct:  375 HATMKEWLVFSDLHVSPASLAVSLE---VLDRVNEEAMKRSACGIAFLGDFWHARGSLKVDLLVPVMEHLATWTRPVVMIPGNHDQVT 459          
BLAST of mRNA_P-wetherbeei_contig150.7.1 vs. uniprot
Match: A0A482SKU5_9ARCH (Metallophos domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SKU5_9ARCH)

HSP 1 Score: 109 bits (273), Expect = 6.000e-29
Identity = 51/87 (58.62%), Postives = 64/87 (73.56%), Query Frame = 1
Query:    1 HAACEQWVVFSDLHVSTASLDICLQARMVLDVVHEEAMRRPNCGIAFLGDFWQARGTIKVELLNAVMNRLSRWQRPVIMIPGNHDQV 261
            HA   QWVVFSDLHV   S++ C    ++L+ VHEEA++R + GI FLGDFW  RG++ V+LLN VM  L +W +PVIMIPGNHDQV
Sbjct:   20 HAQTHQWVVFSDLHVKPTSIETC---ELLLNCVHEEAVKR-DAGIIFLGDFWHVRGSLNVDLLNRVMKALEKWTQPVIMIPGNHDQV 102          
BLAST of mRNA_P-wetherbeei_contig150.7.1 vs. uniprot
Match: A0A448ZKB3_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZKB3_9STRA)

HSP 1 Score: 113 bits (282), Expect = 4.190e-27
Identity = 51/89 (57.30%), Postives = 68/89 (76.40%), Query Frame = 1
Query:    1 HAACEQWVVFSDLHVSTASLDICLQARMVLDVVHEEAMR-RPNCGIAFLGDFWQARGTIKVELLNAVMNRLSRWQRPVIMIPGNHDQVS 264
            HA  E+WVVF+DLH S A+LD CL+   VLDVVH+ AM+ +  CG+ FLGDFW  RGT++V+ LNA++  L  W+ P++MIPGNHDQV+
Sbjct:  165 HATYERWVVFTDLHCSPATLDTCLE---VLDVVHDTAMQQKEKCGVLFLGDFWHHRGTLRVDCLNAILGALRSWKVPMVMIPGNHDQVT 250          
BLAST of mRNA_P-wetherbeei_contig150.7.1 vs. uniprot
Match: A0A836CHZ6_9STRA (Metallophos domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHZ6_9STRA)

HSP 1 Score: 112 bits (281), Expect = 5.760e-27
Identity = 50/89 (56.18%), Postives = 64/89 (71.91%), Query Frame = 1
Query:    1 HAACEQWVVFSDLHVSTASLDICLQARMVLDVVHEEAMRRPNCGIAFLGDFWQARGTIKVELLNAVMNRLSRWQRPVIMIPGNHDQVSQ 267
            H A  QWVVFSDLHV   SL +C++   VLD V  EA  RP  G+ FLGDFW  RGT++V+LLNAV+ RL+ W+ PV+++PGNHDQ  +
Sbjct:  266 HRAVTQWVVFSDLHVGVGSLSVCME---VLDRVRAEAEARPGAGVLFLGDFWHLRGTLRVDLLNAVLARLAAWRAPVVLLPGNHDQCQK 351          
BLAST of mRNA_P-wetherbeei_contig150.7.1 vs. uniprot
Match: A0A1E7FVC2_9STRA (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FVC2_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.440e-26
Identity = 51/89 (57.30%), Postives = 66/89 (74.16%), Query Frame = 1
Query:    1 HAACEQWVVFSDLHVSTASLDICLQARMVLDVVHEEAMRRPN-CGIAFLGDFWQARGTIKVELLNAVMNRLSRWQRPVIMIPGNHDQVS 264
            HA  ++WVVF+DLH S  +LD CL+   VL +VHE AM++   CGI FLGDFW  RGT++V+ LNA++N    WQ P+IMIPGNHDQV+
Sbjct:   21 HATYKKWVVFTDLHCSPTTLDTCLE---VLHIVHETAMKQTEKCGILFLGDFWHHRGTLRVDCLNAILNEFRSWQVPMIMIPGNHDQVT 106          
BLAST of mRNA_P-wetherbeei_contig150.7.1 vs. uniprot
Match: A0A1Y1HYH7_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HYH7_KLENI)

HSP 1 Score: 102 bits (255), Expect = 1.850e-23
Identity = 51/83 (61.45%), Postives = 58/83 (69.88%), Query Frame = 1
Query:   16 QWVVFSDLHVSTASLDICLQARMVLDVVHEEAMRRPNCGIAFLGDFWQARGTIKVELLNAVMNRLSRWQRPVIMIPGNHDQVS 264
            +WVVFSDLH+S  +LDICLQ    L  VH EA  R N GI FLGDFW  RG + VE LN V+  +  WQRP +MIPGNHDQVS
Sbjct:  145 RWVVFSDLHLSRRTLDICLQT---LRQVHAEAAAR-NAGILFLGDFWHERGALPVEPLNQVLQVIQAWQRPTLMIPGNHDQVS 223          
BLAST of mRNA_P-wetherbeei_contig150.7.1 vs. uniprot
Match: A0A7S3V904_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V904_9STRA)

HSP 1 Score: 102 bits (253), Expect = 3.460e-23
Identity = 46/84 (54.76%), Postives = 62/84 (73.81%), Query Frame = 1
Query:   13 EQWVVFSDLHVSTASLDICLQARMVLDVVHEEAMRRPNCGIAFLGDFWQARGTIKVELLNAVMNRLSRWQRPVIMIPGNHDQVS 264
            ++WV F+DLH + A+L  C+    VL  VH +A +R N G+ FLGDFW  RGT++V+ LNAV+N LS W+ P+IM+PGNHDQVS
Sbjct:  298 KKWVTFTDLHCAPATLTTCIN---VLSAVHAKA-KRENAGVLFLGDFWHHRGTVRVDCLNAVLNALSEWEVPMIMLPGNHDQVS 377          
BLAST of mRNA_P-wetherbeei_contig150.7.1 vs. uniprot
Match: A0A2K3D184_CHLRE (Metallophos domain-containing protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3D184_CHLRE)

HSP 1 Score: 101 bits (251), Expect = 6.470e-23
Identity = 52/92 (56.52%), Postives = 63/92 (68.48%), Query Frame = 1
Query:    7 ACEQWVVFSDLHVSTASLDICLQARMVLDVVHEEAMRRPNCGIAFLGDFWQARGTIKVELLNAVMNRLSRWQRPVIMIPGNHDQ-VSQTNKR 279
            A +QWVVFSDLHV  +SL +CLQ   VL  VH EA  R N GI FLGDFW  RG + VE LN V+  +S W+ PV+M+ GNHDQ  ++TN R
Sbjct:  267 AVQQWVVFSDLHVRESSLGVCLQ---VLRAVHSEAQAR-NAGILFLGDFWDKRGALPVEPLNQVLQEMSGWRCPVLMLVGNHDQRTARTNSR 354          
BLAST of mRNA_P-wetherbeei_contig150.7.1 vs. uniprot
Match: A0A7S1SKF1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SKF1_9CHLO)

HSP 1 Score: 94.7 bits (234), Expect = 6.500e-23
Identity = 47/84 (55.95%), Postives = 58/84 (69.05%), Query Frame = 1
Query:   13 EQWVVFSDLHVSTASLDICLQARMVLDVVHEEAMRRPNCGIAFLGDFWQARGTIKVELLNAVMNRLSRWQRPVIMIPGNHDQVS 264
            + WVVFSDLHVS ASLD  L+A   L  V EEA RR N G+ FLGDFW  RG++ VE LNA+++    W  P +M+ GNHDQV+
Sbjct:   12 QSWVVFSDLHVSAASLDTSLRA---LRAVKEEAARR-NAGVLFLGDFWHHRGSLPVEPLNAILDEFVDWTAPTLMLVGNHDQVT 91          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig150.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KB20_9PHAE8.410e-3064.77ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FQ73_ECTSI1.150e-2964.77DNA double-strand break repair rad50 ATPase n=1 Ta... [more]
A0A482SKU5_9ARCH6.000e-2958.62Metallophos domain-containing protein n=1 Tax=arch... [more]
A0A448ZKB3_9STRA4.190e-2757.30Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A836CHZ6_9STRA5.760e-2756.18Metallophos domain-containing protein n=1 Tax=Trib... [more]
A0A1E7FVC2_9STRA1.440e-2657.30p-loop containing nucleoside triphosphate hydrolas... [more]
A0A1Y1HYH7_KLENI1.850e-2361.45Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A7S3V904_9STRA3.460e-2354.76Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
A0A2K3D184_CHLRE6.470e-2356.52Metallophos domain-containing protein n=1 Tax=Chla... [more]
A0A7S1SKF1_9CHLO6.500e-2355.95Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig150contigP-wetherbeei_contig150:12386..13252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FQ73
PFAMsAAA_23,Metallophos,Metallophos_2,SMC_N,SbcCD_C
Model size285
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.88e-30
EggNOG OGs28INY@1|root,2QQZZ@2759|Eukaryota
Cds size285
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186040.5683832-CDS-P-wetherbeei_contig150:12385..124691683186040.5683832-CDS-P-wetherbeei_contig150:12385..12469Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig150 12386..12469 +
1683186040.5800462-CDS-P-wetherbeei_contig150:12767..128421683186040.5800462-CDS-P-wetherbeei_contig150:12767..12842Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig150 12768..12842 +
1683186040.590737-CDS-P-wetherbeei_contig150:13126..132521683186040.590737-CDS-P-wetherbeei_contig150:13126..13252Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig150 13127..13252 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig150.7.1prot_P-wetherbeei_contig150.7.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig150 12386..13252 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig150.7.1

>prot_P-wetherbeei_contig150.7.1 ID=prot_P-wetherbeei_contig150.7.1|Name=mRNA_P-wetherbeei_contig150.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=95bp
HAACEQWVVFSDLHVSTASLDICLQARMVLDVVHEEAMRRPNCGIAFLGD
FWQARGTIKVELLNAVMNRLSRWQRPVIMIPGNHDQVSQTNKRL*
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mRNA from alignment at P-wetherbeei_contig150:12386..13252+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig150.7.1 ID=mRNA_P-wetherbeei_contig150.7.1|Name=mRNA_P-wetherbeei_contig150.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=867bp|location=Sequence derived from alignment at P-wetherbeei_contig150:12386..13252+ (Phaeothamnion wetherbeei SAG_119_79)
CACGCAGCGTGCGAGCAATGGGTCGTGTTTTCTGACCTGCACGTGTCAAC CGCCAGCCTCGACATCTGTCTGCAGGCGAGGATGGTTTGATCCCTTTCGG TAATAACTTTCGGAAGCCTCGTTTGTCTTTTATTGATTATATTCTGCTTG GAATGCGCACTTAGGCGAAGGCACCTCTGCAGTCCGAATTAAGGGGAGGG GCATCTTACTTCGACCAGATTGGGCAGAACGGATCGTTGCATAGGACAAA AGCAACATTTTTCAATGTACTCTCCTTTTTTGGCGATTTTGCTTATGCGG CTTCTGCTCTGCTGCTCCGCTTTCGATATTCTGTTGGCCGGCCAAAAATT GTCTGTTGCCGTGCTTGCGGCGGACGATACAGGTGCTGGATGTGGTCCAC GAGGAGGCCATGCGGCGGCCCAACTGCGGTATCGCTTTTCTCGGCGACTT TTGGCAGGTGAAAAGGAGGGAATGAGGATCGACGGGTTGGTTTTCATACT TTCTCCTCTTGCGAATATAATTGTCTGTTATGGTATGAAAGGCCGCCTGC TCTCGCTTGCTGCTCTTCACACCAGCGCCGAGCCATGACAGCTCTGGCCC GGGCTGCGTTTTCTATTAGCAGCTCTGATTCTTCAGATCTGAGCCTTTCC GTGCGGAAAGCAGGCACCTTGAGGAAGGGCCCATGTTGGATCTTGTGTGC TGACGGCTCTTTTTCTCGAATCTCCAATGCCTCAACTGCAGGCGCGCGGC ACGATCAAAGTGGAGCTGCTGAACGCTGTGATGAATCGTCTCAGCCGGTG GCAGCGGCCTGTCATCATGATCCCTGGAAACCACGACCAGGTGAGTCAAA CTAATAAGAGATTGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig150:12386..13252+

>mRNA_P-wetherbeei_contig150.7.1 ID=mRNA_P-wetherbeei_contig150.7.1|Name=mRNA_P-wetherbeei_contig150.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig150:12386..13252+ (Phaeothamnion wetherbeei SAG_119_79)
CACGCAGCGTGCGAGCAATGGGTCGTGTTTTCTGACCTGCACGTGTCAAC
CGCCAGCCTCGACATCTGTCTGCAGGCGAGGATGGTGCTGGATGTGGTCC
ACGAGGAGGCCATGCGGCGGCCCAACTGCGGTATCGCTTTTCTCGGCGAC
TTTTGGCAGGCGCGCGGCACGATCAAAGTGGAGCTGCTGAACGCTGTGAT
GAATCGTCTCAGCCGGTGGCAGCGGCCTGTCATCATGATCCCTGGAAACC
ACGACCAGGTGAGTCAAACTAATAAGAGATTGTAA
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