mRNA_P-wetherbeei_contig14973.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14973.1.1
Unique NamemRNA_P-wetherbeei_contig14973.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14973.1.1 vs. uniprot
Match: I2CRI6_NANGC (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRI6_NANGC)

HSP 1 Score: 123 bits (309), Expect = 2.630e-32
Identity = 71/125 (56.80%), Postives = 85/125 (68.00%), Query Frame = 1
Query:   88 PCAQTAVARLFASHAH-SSNRSRRGLYHGKDVRFGNTVSFSHRVHRRKFKPNVHVKRLWSETLERLCKFHITTHTLRIVDKYGGLDGYLLKTSDAKLNSSQGLAVKREIEEVLALRATATETTAA 459
            P A   +A  FA     SSNR+RRGLY GKDV FGN VS S+R  RR FKPN H KRLWS+TL+ +  F++TT TLR+VDK GGLD YLL+T D KL+S  G+ VKR IE + A   T  + TAA
Sbjct:    7 PVALVDLAAAFARMGRPSSNRARRGLYAGKDVLFGNKVSHSNRKTRRMFKPNAHHKRLWSDTLQDMIPFYLTTTTLRMVDKVGGLDNYLLQTPDHKLDSESGIKVKRRIENIKARSDTIEKPTAA 131          
BLAST of mRNA_P-wetherbeei_contig14973.1.1 vs. uniprot
Match: A0A7S3ZX50_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZX50_9STRA)

HSP 1 Score: 120 bits (301), Expect = 6.080e-31
Identity = 70/134 (52.24%), Postives = 85/134 (63.43%), Query Frame = 1
Query:   31 TMSFLRHAVMGLRDRLCAAPCAQTAVARLFASHAHSSNRSRRGLYHGKDVRFGNTVSFSHRVHRRKFKPNVHVKRLWSETLERLCKFHITTHTLRIVDKYGGLDGYLLKTSDAKLNSSQGLAVKREIEEVLALR 432
            T + LR A+  L   L A P A T       + A +SNRS+RG+Y GKD+RFGN +SFSHR  RR FKPN   KRLWSETL    +F++TTH LR +D+ GG+D YLLKT DAKL S  G   +R IE   A R
Sbjct:   32 TDNMLRSALSRLT--LTARPAAPT------TTRAFASNRSKRGIYAGKDIRFGNNISFSHRKTRRTFKPNAQRKRLWSETLGCWLRFNLTTHALRCIDRAGGIDAYLLKTPDAKLGSIAGANARRMIEAARASR 157          
BLAST of mRNA_P-wetherbeei_contig14973.1.1 vs. uniprot
Match: A0A7S2RZD4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RZD4_9STRA)

HSP 1 Score: 115 bits (287), Expect = 4.440e-29
Identity = 61/101 (60.40%), Postives = 70/101 (69.31%), Query Frame = 1
Query:  136 SSNRSRRGLYHGKDVRFGNTVSFSHRVHRRKFKPNVHVKRLWSETLERLCKFHITTHTLRIVDKYGGLDGYLLKTSDAKLNSSQGLAVKREIEEVLALRAT 438
            +S R+ RGL+  KD+RFGN VS S R  RR +KPN   KRLWSETLE   KF  TT+ L+ +DK GGLD YLL+T D KLNS  GLA KR IEEVL  R T
Sbjct:   17 ASGRALRGLFGNKDIRFGNKVSHSERKTRRSWKPNAQNKRLWSETLEEFLKFKTTTYVLKCIDKVGGLDNYLLRTPDKKLNSITGLAAKRRIEEVLQQRQT 117          
BLAST of mRNA_P-wetherbeei_contig14973.1.1 vs. uniprot
Match: A0A6H5KS33_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KS33_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 4.550e-29
Identity = 60/98 (61.22%), Postives = 73/98 (74.49%), Query Frame = 1
Query:  139 SNRSRRGLYHGKDVRFGNTVSFSHRVHRRKFKPNVHVKRLWSETLERLCKFHITTHTLRIVDKYGGLDGYLLKTSDAKLNSSQGLAVKREIEEVLALR 432
            S RS+ GLY GKD+ FGNT+SFSH+ +RR +KPNV  K L+SETL+   KF++TTH LR VD+ GG+D YLLKT D  LNS QG   KR+IEE LA R
Sbjct:   28 SKRSQIGLYAGKDIGFGNTISFSHKKNRRTWKPNVQKKALYSETLDEWIKFNLTTHALRCVDRAGGIDKYLLKTPDEWLNSVQGSKAKRKIEEALAAR 125          
BLAST of mRNA_P-wetherbeei_contig14973.1.1 vs. uniprot
Match: A0A7R9ZLR2_9STRA (Hypothetical protein n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZLR2_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.190e-25
Identity = 58/97 (59.79%), Postives = 68/97 (70.10%), Query Frame = 1
Query:  121 ASHAHSSNRSRRGLYHGKDVRFGNTVSFSHRVHRRKFKPNVHVKRLWSETLERLCKFHITTHTLRIVDKYGGLDGYLLKTSDAKLNSSQGLAVKREI 411
            AS  H SNRSRRGLY GKDVR GN VSFS +  RRKFKPNV  KRL+SETL+ + +FH+TT  LR +DK GGLD YLL  S   +   +GL  K+ I
Sbjct:   69 ASARHRSNRSRRGLYDGKDVRSGNNVSFSMKATRRKFKPNVFRKRLYSETLDEMVRFHVTTSALRSIDKAGGLDNYLL--SSKHVLEGEGLMAKKRI 163          
BLAST of mRNA_P-wetherbeei_contig14973.1.1 vs. uniprot
Match: A0A7S3K4M7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K4M7_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.670e-24
Identity = 50/91 (54.95%), Postives = 66/91 (72.53%), Query Frame = 1
Query:  133 HSSNRSRRGLYHGKDVRFGNTVSFSHRVHRRKFKPNVHVKRLWSETLERLCKFHITTHTLRIVDKYGGLDGYLLKTSDAKLNSSQGLAVKR 405
            H SNR++RGLYH KDVR GN+VSFS R  RRK+KPNV  K+ WS+ L    +F +TTH ++ +DK GG+D Y+L+T ++KLNS  G   KR
Sbjct:   35 HGSNRAKRGLYHLKDVRSGNSVSFSERKTRRKWKPNVQTKKFWSQILCCWLRFKVTTHAIKCIDKKGGIDKYILETPESKLNSIAGNNAKR 125          
BLAST of mRNA_P-wetherbeei_contig14973.1.1 vs. uniprot
Match: A0A7S2HHC9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HHC9_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.840e-24
Identity = 55/98 (56.12%), Postives = 67/98 (68.37%), Query Frame = 1
Query:  130 AHSSNRSRRGLYHGKDVRFGNTVSFSHRVHRRKFKPNVHVKRLWSETLERLCKFHITTHTLRIVDKYGGLDGYLLKTSDAKLNSSQGLAVKREIEEVL 423
            A +S R+ RGL+ GKDVRFGN VS S R  RR +KPNV  K+LWSETL+   +F++T H +R VDK GG+D YLL   D  L S QGLA K +I E L
Sbjct:   13 ARTSGRALRGLFGGKDVRFGNKVSHSERKTRRMWKPNVQRKKLWSETLQDYLRFNMTVHAMRCVDKAGGVDNYLLAIPDKDLKSDQGLAAKCKIIEKL 110          
BLAST of mRNA_P-wetherbeei_contig14973.1.1 vs. uniprot
Match: A0A6U6KDT0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6KDT0_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.020e-24
Identity = 60/109 (55.05%), Postives = 76/109 (69.72%), Query Frame = 1
Query:  139 SNRSRRGLYHGKDVRFGNTVSFSHRVHRRKFKPNVHVKRLWSETLERLCKFHITTHTLRIVDKYGGLDGYLLKTSDAKLNSSQGLAVKREIEEVLAL-RATATETTAAE 462
            SNRSRRGLY GKD+R GN VSFS++  +RKFKPNV  K ++SETL+   +FHITT  LR +DK+GGLD YLLK+      S +GLA K+ I + + L +   TET  AE
Sbjct:  115 SNRSRRGLYDGKDIRSGNNVSFSNKKTKRKFKPNVFKKSVYSETLDEKIRFHITTSALRSIDKFGGLDNYLLKSKHVA--SGEGLAAKKRILQQMWLNKKRETETNVAE 221          
BLAST of mRNA_P-wetherbeei_contig14973.1.1 vs. uniprot
Match: A0A8J9TIJ5_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TIJ5_PHATR)

HSP 1 Score: 100 bits (249), Expect = 4.930e-24
Identity = 50/73 (68.49%), Postives = 58/73 (79.45%), Query Frame = 1
Query:  139 SNRSRRGLYHGKDVRFGNTVSFSHRVHRRKFKPNVHVKRLWSETLERLCKFHITTHTLRIVDKYGGLDGYLLK 357
            SNRSRRGLY GKDVR GN VSFS R  +R FKPNV +KR++SE L+ + KFH+TT TLR +DK GGLD YLLK
Sbjct:   12 SNRSRRGLYDGKDVRTGNNVSFSMRATKRTFKPNVMIKRVYSEILDEMVKFHLTTSTLRSIDKAGGLDNYLLK 84          
BLAST of mRNA_P-wetherbeei_contig14973.1.1 vs. uniprot
Match: A0A1Z5JRZ0_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JRZ0_FISSO)

HSP 1 Score: 101 bits (251), Expect = 8.590e-24
Identity = 51/91 (56.04%), Postives = 67/91 (73.63%), Query Frame = 1
Query:  139 SNRSRRGLYHGKDVRFGNTVSFSHRVHRRKFKPNVHVKRLWSETLERLCKFHITTHTLRIVDKYGGLDGYLLKTSDAKLNSSQGLAVKREI 411
            SNRSRRGLY GKD+R GN+VSFS +  +RKFKPNV +KR++SE L+ + +FH+TT  LR +DK GGLD YL+K    +    +G  VKR+I
Sbjct:   26 SNRSRRGLYDGKDIRSGNSVSFSMKSTKRKFKPNVFLKRVYSEILDEMVQFHLTTSALRSIDKAGGLDNYLMKN---EFTEGEGFEVKRKI 113          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14973.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
I2CRI6_NANGC2.630e-3256.80Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S3ZX50_9STRA6.080e-3152.24Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S2RZD4_9STRA4.440e-2960.40Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6H5KS33_9PHAE4.550e-2961.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7R9ZLR2_9STRA1.190e-2559.79Hypothetical protein n=2 Tax=Craspedostauros austr... [more]
A0A7S3K4M7_9STRA1.670e-2454.95Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2HHC9_9STRA1.840e-2456.12Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6U6KDT0_9STRA2.020e-2455.05Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A8J9TIJ5_PHATR4.930e-2468.49Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A1Z5JRZ0_FISSO8.590e-2456.04Uncharacterized protein n=1 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14973contigP-wetherbeei_contig14973:256..1092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G9G5
PFAMsRibosomal_L28
Model size654
Max annot lvl2759|Eukaryota
KEGG koko:K02902
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categorymitochondrion
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0031974,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons2
Evalue1.94e-30
EggNOG OGsCOG0227@1|root,KOG3278@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein L28
Ec32 orthologEc-28_000830.1
Descriptionmitochondrial translation
Cds size525
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186039.0184073-UTR-P-wetherbeei_contig14973:255..3511683186039.0184073-UTR-P-wetherbeei_contig14973:255..351Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14973 256..351 -
1683186039.0470352-UTR-P-wetherbeei_contig14973:1059..10921683186039.0470352-UTR-P-wetherbeei_contig14973:1059..1092Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14973 1060..1092 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186039.0288494-CDS-P-wetherbeei_contig14973:351..6311683186039.0288494-CDS-P-wetherbeei_contig14973:351..631Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14973 352..631 -
1683186039.03797-CDS-P-wetherbeei_contig14973:814..10591683186039.03797-CDS-P-wetherbeei_contig14973:814..1059Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14973 815..1059 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14973.1.1prot_P-wetherbeei_contig14973.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14973 352..1059 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14973.1.1

>prot_P-wetherbeei_contig14973.1.1 ID=prot_P-wetherbeei_contig14973.1.1|Name=mRNA_P-wetherbeei_contig14973.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=175bp
MSFLRHAVMGLRDRLCAAPCAQTAVARLFASHAHSSNRSRRGLYHGKDVR
FGNTVSFSHRVHRRKFKPNVHVKRLWSETLERLCKFHITTHTLRIVDKYG
GLDGYLLKTSDAKLNSSQGLAVKREIEEVLALRATATETTAAEGRETRSD
GPGGAEAAWPQSESNARATSIAPP*
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mRNA from alignment at P-wetherbeei_contig14973:256..1092-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14973.1.1 ID=mRNA_P-wetherbeei_contig14973.1.1|Name=mRNA_P-wetherbeei_contig14973.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=837bp|location=Sequence derived from alignment at P-wetherbeei_contig14973:256..1092- (Phaeothamnion wetherbeei SAG_119_79)
CTCCTGTACCGCATTCCGCGCCCTGCTCACACGATGTCCTTCCTCCGGCA CGCGGTGATGGGCCTGCGCGACCGCTTGTGCGCTGCGCCTTGTGCCCAAA CAGCCGTGGCGCGCCTGTTCGCGAGTCACGCCCACTCGTCGAACCGCAGC CGCCGCGGCCTCTACCACGGCAAGGACGTGCGCTTCGGCAACACCGTTTC CTTCTCGCACCGTGTCCACCGCAGAAAGTTCAAGCCAAACGTGCACGTGA AGCGCCTCTGGAGCGAGACATTAGAAAGGTGACTGAGAAACGCTCTCACT CATCATGTTGGGGCCGAGCCTTTCCCCTTGTGTTTGCACGTTGGTCATTT GCGAGCCCCATTCCTCCTCACCCTCACCTCTTCTTGTCGCAGAATATTTT GCCAGGCCTCTCCAACTCGTCTCTCTCTCTTATTGAAACGCCTTCCTTGG AAAACCGTCAGGCTCTGCAAGTTCCACATTACAACTCACACCTTGCGCAT CGTGGACAAATACGGCGGCCTCGACGGCTACCTGCTCAAAACGTCCGATG CGAAGCTAAACTCCAGTCAAGGGCTTGCCGTTAAGCGCGAGATCGAGGAG GTCTTGGCATTGCGAGCAACAGCAACGGAAACGACCGCGGCGGAGGGAAG GGAGACCAGAAGTGACGGCCCAGGAGGAGCGGAAGCGGCATGGCCACAAA GCGAAAGCAACGCACGAGCAACTAGCATAGCGCCCCCATAAAACTCTTCA ATAGTTACAGCATTCCTTCACCTTCGTCTCCATTTTGGACATTAGGCACC TTCAGCTTGTCGCGAGCATGATTTTTGACTCTTTCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14973:256..1092-

>mRNA_P-wetherbeei_contig14973.1.1 ID=mRNA_P-wetherbeei_contig14973.1.1|Name=mRNA_P-wetherbeei_contig14973.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=525bp|location=Sequence derived from alignment at P-wetherbeei_contig14973:256..1092- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCTTCCTCCGGCACGCGGTGATGGGCCTGCGCGACCGCTTGTGCGC
TGCGCCTTGTGCCCAAACAGCCGTGGCGCGCCTGTTCGCGAGTCACGCCC
ACTCGTCGAACCGCAGCCGCCGCGGCCTCTACCACGGCAAGGACGTGCGC
TTCGGCAACACCGTTTCCTTCTCGCACCGTGTCCACCGCAGAAAGTTCAA
GCCAAACGTGCACGTGAAGCGCCTCTGGAGCGAGACATTAGAAAGGCTCT
GCAAGTTCCACATTACAACTCACACCTTGCGCATCGTGGACAAATACGGC
GGCCTCGACGGCTACCTGCTCAAAACGTCCGATGCGAAGCTAAACTCCAG
TCAAGGGCTTGCCGTTAAGCGCGAGATCGAGGAGGTCTTGGCATTGCGAG
CAACAGCAACGGAAACGACCGCGGCGGAGGGAAGGGAGACCAGAAGTGAC
GGCCCAGGAGGAGCGGAAGCGGCATGGCCACAAAGCGAAAGCAACGCACG
AGCAACTAGCATAGCGCCCCCATAA
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