mRNA_P-wetherbeei_contig14814.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14814.3.1
Unique NamemRNA_P-wetherbeei_contig14814.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14814.3.1 vs. uniprot
Match: A0A3C0TYL7_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TYL7_9PROT)

HSP 1 Score: 128 bits (321), Expect = 6.350e-35
Identity = 64/148 (43.24%), Postives = 93/148 (62.84%), Query Frame = 1
Query:    4 PELQLQRPELVELLEYWKRKRDTRPFPSRRDISPREMIEVLPWLHMYDVLGGGEEYLCRLGGTALSDLTGRTDSRDRSISTLPYPVFVRLKQALDWVVRTRAPLRTYNPSTSIPGQEFQGSESFFAPLSNDGAAIDVIIGATMLNNRK 447
            P+L   R EL E L+YW+ K   R FP+R DI+PRE+  +LPW++MYDV   GEE+  RL G+ LS      D R + +S+ P  +  R ++ +DWV+ TR P+R    S+SIPGQEFQG+E    PLS++G  I++++   +L   K
Sbjct:   12 PDLNFSRGELTEFLDYWRSKSRERNFPTRADINPREIERLLPWVNMYDVSPEGEEHRIRLLGSVLSSNFNIGDLRGKPLSSFPPLLASRARKGIDWVLETRGPIRAVATSSSIPGQEFQGTEICAVPLSDNGQDINIVMVIALLEKHK 159          
BLAST of mRNA_P-wetherbeei_contig14814.3.1 vs. uniprot
Match: A0A3C0TRJ0_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TRJ0_9PROT)

HSP 1 Score: 106 bits (265), Expect = 2.960e-27
Identity = 50/97 (51.55%), Postives = 67/97 (69.07%), Query Frame = 1
Query:   49 YWKRKRDTRPFPSRRDISPREMIEVLPWLHMYDVLGGGEEYLCRLGGTALSDLTGRTDSRDRSISTLPYPVFVRLKQALDWVVRTRAPLRTYNPSTS 339
            YW  KR  R FPSR DI+PR++  +LPWLH++DV   GEE   RL GT LS+  G  D R + +STLP  V+ R+KQA++WV+  RAP+RTY P+ +
Sbjct:    1 YWNAKRAGREFPSREDITPRDIPHLLPWLHLHDVPPSGEEIHIRLVGTMLSETFGDGDMRGKPLSTLPAGVYARVKQAINWVMDARAPIRTYAPNAA 97          
BLAST of mRNA_P-wetherbeei_contig14814.3.1 vs. uniprot
Match: UPI001A05334E (PAS domain-containing protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI001A05334E)

HSP 1 Score: 66.6 bits (161), Expect = 7.580e-11
Identity = 39/132 (29.55%), Postives = 67/132 (50.76%), Query Frame = 1
Query:   31 LVELLEYWKRKRDTRPFPSRRDISPREMIEVLPWLHMYDVLGGGEEYLCRLGGTALSDLTGRTDSRDRSISTLPYPVFVRLKQALDWVVRTRAPLRTYNPSTSIPGQEFQGSESFFAPLSNDGAAIDVIIGA 426
            L  L EYW  KR  RP P+RRDI P E+ ++L ++++Y+V     ++  RL G+ ++++ G+  +     + +  P  V  K A D  V    P      S +  G+ +        PL +DG ++D+I+ A
Sbjct:   20 LRRLYEYWNAKRGDRPAPTRRDIDPVEIPDLLGFVNIYEVQDEPRDFKVRLNGSEVAEMLGQDITGKYCSTVISGPDAVSYKTAFDICVDQCRPA-IVETSLAFCGKPYMAQTIIVLPLGSDGESVDMIVTA 150          
BLAST of mRNA_P-wetherbeei_contig14814.3.1 vs. uniprot
Match: A0A843RNW1_9PROT (PAS domain-containing protein n=1 Tax=Kiloniellaceae bacterium TaxID=2480820 RepID=A0A843RNW1_9PROT)

HSP 1 Score: 65.1 bits (157), Expect = 3.710e-10
Identity = 41/139 (29.50%), Postives = 69/139 (49.64%), Query Frame = 1
Query:   31 LVELLEYWKRKRDTRPFPSRRDISPREMIEVLPWLHMYDVLGGGEEYLCRLGGTALSD-----LTGRTDSRDRSISTLPYPVFVRLKQALDWVVRTRAPLRTYNPSTSIPGQEFQGSESFFAPLSNDGAAIDVIIGATM 432
            L  L  YW  +      PSRRDI P ++ ++LP L + DV+G  E+++ RL G+ + D     L G++ +  +  +  P PV   ++     V R   P R    S  + G++   ++    PLS DG  +DV++G  +
Sbjct:   28 LRRLYNYWWSRCRNGAMPSRRDIDPLDIPDLLPNLFLLDVVGNAEDFVFRLAGSLVEDAFSMPLRGKSITEIQKAAGTPIPVAQHIE-----VARGGGP-RYREGSVLVAGRDHLRTQRLLLPLSTDGGTVDVLMGGAI 160          
BLAST of mRNA_P-wetherbeei_contig14814.3.1 vs. uniprot
Match: A0A437QY27_9PROT (PAS domain-containing protein n=2 Tax=Hwanghaeella grinnelliae TaxID=2500179 RepID=A0A437QY27_9PROT)

HSP 1 Score: 63.5 bits (153), Expect = 1.130e-9
Identity = 45/145 (31.03%), Postives = 71/145 (48.97%), Query Frame = 1
Query:   16 LQRPELVELLEYWKRKRDTRPFPSRRDISPREMIEVLPWLHMYDVLGGGEEYLCRLGGTAL-----SDLTGRTDSRDRSISTLPYPVFVRLKQALDWVVRTRAPLRTYNPSTSIPGQEFQGSESFF----APLSNDGAAIDVIIG 423
            L+ P L E L YW  K+  R FPSR D+ P ++  +LP++ + DVLG G ++  RL GT +      D TG   S  R I +       +L +     V  +AP+     +  +P +   G + F+     PLS +G  +D++ G
Sbjct:   26 LKPPSLEEFLSYWDSKKSGRTFPSRLDLDPVDIPNMLPFVFLVDVLGQGHDFRYRLVGTDIVRNTKKDFTGYLLSEIREIGSQG-----KLIEMYQRTVADKAPV-----TERLPFKTRGGVKKFYDVAVTPLSRNGEVVDMLFG 160          
BLAST of mRNA_P-wetherbeei_contig14814.3.1 vs. uniprot
Match: UPI001D05189A (PAS domain-containing protein n=1 Tax=Pelagibius sp. NBU2595 TaxID=2762760 RepID=UPI001D05189A)

HSP 1 Score: 63.2 bits (152), Expect = 1.350e-9
Identity = 38/139 (27.34%), Postives = 72/139 (51.80%), Query Frame = 1
Query:   31 LVELLEYWKRKRDTRPFPSRRDISPREMIEVLPWLHMYDVLGGGEEYLCRLGGTALSD-----LTGRTDSRDRSISTLPYPVFVRLKQALDWVVRTRAPLRTYNPSTSIPGQEFQGSESFFAPLSNDGAAIDVIIGATM 432
            L  L +YW+ +     +PSRRDI P ++ ++LP + + DV+G  ++++ RL GT + D     L G++ +  +  +  P PV   ++     V R   P R       + G++   +     PL++DG ++DV++G  +
Sbjct:    6 LRRLYDYWRSRCGGGTYPSRRDIDPIDIPDLLPNIFLLDVVGDAQDFVFRLAGTLVEDAFSMPLRGKSITEIQKAAGTPIPVEHHVE-----VARGGGP-RYREGEMLVAGRDHWKTHRLLLPLASDGCSVDVLMGGAI 138          
BLAST of mRNA_P-wetherbeei_contig14814.3.1 vs. uniprot
Match: A0A6N6VFW9_9HYPH (PAS domain-containing protein n=2 Tax=Parvibaculum sedimenti TaxID=2608632 RepID=A0A6N6VFW9_9HYPH)

HSP 1 Score: 63.9 bits (154), Expect = 1.590e-9
Identity = 48/153 (31.37%), Postives = 76/153 (49.67%), Query Frame = 1
Query:   25 PELVELLEYWKRKRDTRPFPSRRDISPREMIEVLPWLHMYDVLGGGEEYLCRLGGTAL-----SDLTGRTDSRDRSISTLPY-PVFVRLKQALDWVVRTRAPLRTYNPSTSIPGQEFQGSESFFA------PLSNDGAAIDVIIGATMLNNRK 447
            P +  L +YW  KR  R  P R DISP E++++LP L + DVLG GE++  RL GTAL      + TG+  S   + +++P  P  V+ +    W+  TR       P   + G       S+ A      PL+  G +I  ++GA  + +++
Sbjct:   72 PGVSALTDYWLAKRGPRTMPDRADISPAEIVKLLPNLIICDVLGDGEDFRTRLFGTALVLIVGEERTGKCLSEFGTRASVPTRPEIVQFR----WLDVTRRAYALKEP-VFVNGTMSSSDRSYLALHAVSMPLTAGGTSIAQMLGAMFVTDKR 219          
BLAST of mRNA_P-wetherbeei_contig14814.3.1 vs. uniprot
Match: A0A5J6MLE7_9PROT (Uncharacterized protein n=1 Tax=Hypericibacter terrae TaxID=2602015 RepID=A0A5J6MLE7_9PROT)

HSP 1 Score: 59.7 bits (143), Expect = 2.570e-8
Identity = 29/65 (44.62%), Postives = 39/65 (60.00%), Query Frame = 1
Query:   31 LVELLEYWKRKRDTRPFPSRRDISPREMIEVLPWLHMYDVLGGGEEYLCRLGGTALSDLTGRTDS 225
            L +L  YW  KR  RP PSRRD+ PR++  +LP+LH+ DV      +  RL G+ L D+ GR  S
Sbjct:   10 LADLFAYWSAKRGNRPAPSRRDLDPRDITRLLPFLHLIDVEPEPMRFRHRLVGSELVDMMGRNVS 74          
BLAST of mRNA_P-wetherbeei_contig14814.3.1 vs. uniprot
Match: UPI0012BD1B80 (PAS domain-containing protein n=1 Tax=Curvivirga aplysinae TaxID=2529852 RepID=UPI0012BD1B80)

HSP 1 Score: 58.9 bits (141), Expect = 4.200e-8
Identity = 39/128 (30.47%), Postives = 62/128 (48.44%), Query Frame = 1
Query:   40 LLEYWKRKRDTRPFPSRRDISPREMIEVLPWLHMYDVLGGGEEYLCRLGGTALSDLTGRTDSRDRSISTLPYPVFVRLKQALDWVVRTRAPLRTYNPSTSIPGQEFQGSESFFAPLSNDGAAIDVIIG 423
            L  YW  KR  R  PSR+DI P E+ ++LP + M+DV+    ++  RL GT L D+ GR ++ D             L      V  + + + +   S S   ++F   E    PLS DG  +++++G
Sbjct:   19 LYAYWDDKRGGRKAPSRKDIDPIELRDLLPHMFMFDVIRNPIDFKMRLHGTHLVDVMGRDNTGDYFSKMYRGTEADELWDIYCEVANSFSVIYS-KQSASWMSKDFVHYERLLLPLSEDGDEVNILLG 145          
BLAST of mRNA_P-wetherbeei_contig14814.3.1 vs. uniprot
Match: UPI001F0FDD88 (PAS domain-containing protein n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI001F0FDD88)

HSP 1 Score: 55.1 bits (131), Expect = 1.070e-6
Identity = 35/118 (29.66%), Postives = 58/118 (49.15%), Query Frame = 1
Query:   82 PSRRDISPREMIEVLPWLHMYDVLGGGEEYLCRLGGTALSDLTGRTDSRDRSISTLPYPV-FVRLKQALDWVVRTRAPLRTYNPSTSIPGQEFQGSESFFAPLSNDGAAIDVIIGATM 432
            PSRRDI P E+ ++LP + + DV+G GE+++ RL GT + D    T    +SI+ +        +  A    V      R    +  + G+E         PL++DG  +DV++G  +
Sbjct:    2 PSRRDIDPVEIPDLLPNIFLLDVVGDGEDFVFRLAGTLVEDAFSMT-LHGKSIAEIQRQAGSTGIPDAHHIEVARGGGPRYQEGNMPVAGREHWMIHRLLLPLASDGETVDVLMGGAI 118          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14814.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A3C0TYL7_9PROT6.350e-3543.24Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A3C0TRJ0_9PROT2.960e-2751.55Uncharacterized protein (Fragment) n=1 Tax=Alphapr... [more]
UPI001A05334E7.580e-1129.55PAS domain-containing protein n=1 Tax=Proteobacter... [more]
A0A843RNW1_9PROT3.710e-1029.50PAS domain-containing protein n=1 Tax=Kiloniellace... [more]
A0A437QY27_9PROT1.130e-931.03PAS domain-containing protein n=2 Tax=Hwanghaeella... [more]
UPI001D05189A1.350e-927.34PAS domain-containing protein n=1 Tax=Pelagibius s... [more]
A0A6N6VFW9_9HYPH1.590e-931.37PAS domain-containing protein n=2 Tax=Parvibaculum... [more]
A0A5J6MLE7_9PROT2.570e-844.62Uncharacterized protein n=1 Tax=Hypericibacter ter... [more]
UPI0012BD1B804.200e-830.47PAS domain-containing protein n=1 Tax=Curvivirga a... [more]
UPI001F0FDD881.070e-629.66PAS domain-containing protein n=1 Tax=Pelagibius l... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14814contigP-wetherbeei_contig14814:943..1392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1380391.JIAS01000014_gene2082
PFAMsPAS_5
Model size450
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.91e-11
EggNOG OGsCOG5388@1|root,COG5388@2|Bacteria,1Q1Q6@1224|Proteobacteria,2UKHQ@28211|Alphaproteobacteria
DescriptionPAS domain
Cds size450
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186034.3131752-CDS-P-wetherbeei_contig14814:942..13921683186034.3131752-CDS-P-wetherbeei_contig14814:942..1392Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14814 943..1392 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14814.3.1prot_P-wetherbeei_contig14814.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14814 943..1392 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14814.3.1

>prot_P-wetherbeei_contig14814.3.1 ID=prot_P-wetherbeei_contig14814.3.1|Name=mRNA_P-wetherbeei_contig14814.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=150bp
DPELQLQRPELVELLEYWKRKRDTRPFPSRRDISPREMIEVLPWLHMYDV
LGGGEEYLCRLGGTALSDLTGRTDSRDRSISTLPYPVFVRLKQALDWVVR
TRAPLRTYNPSTSIPGQEFQGSESFFAPLSNDGAAIDVIIGATMLNNRK*
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mRNA from alignment at P-wetherbeei_contig14814:943..1392-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14814.3.1 ID=mRNA_P-wetherbeei_contig14814.3.1|Name=mRNA_P-wetherbeei_contig14814.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=450bp|location=Sequence derived from alignment at P-wetherbeei_contig14814:943..1392- (Phaeothamnion wetherbeei SAG_119_79)
GATCCAGAACTGCAATTACAACGGCCCGAACTTGTTGAGCTTCTTGAGTA TTGGAAGCGCAAGCGCGATACACGGCCATTTCCGAGCCGCAGGGACATTT CGCCACGCGAAATGATCGAGGTTCTGCCCTGGCTGCACATGTATGACGTG CTTGGCGGTGGTGAAGAATATCTGTGCCGCCTCGGAGGCACGGCTTTGAG CGATCTGACAGGCCGGACGGATTCCCGTGACCGGTCGATCTCCACACTTC CATATCCCGTTTTTGTACGCCTGAAACAGGCCCTTGACTGGGTCGTGCGG ACGCGGGCGCCATTACGCACCTATAATCCTTCAACATCCATTCCTGGGCA GGAATTTCAGGGCAGTGAGTCTTTCTTTGCGCCATTATCGAATGATGGCG CCGCCATTGACGTGATTATAGGGGCCACTATGCTGAACAATCGCAAATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14814:943..1392-

>mRNA_P-wetherbeei_contig14814.3.1 ID=mRNA_P-wetherbeei_contig14814.3.1|Name=mRNA_P-wetherbeei_contig14814.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=450bp|location=Sequence derived from alignment at P-wetherbeei_contig14814:943..1392- (Phaeothamnion wetherbeei SAG_119_79)
GATCCAGAACTGCAATTACAACGGCCCGAACTTGTTGAGCTTCTTGAGTA
TTGGAAGCGCAAGCGCGATACACGGCCATTTCCGAGCCGCAGGGACATTT
CGCCACGCGAAATGATCGAGGTTCTGCCCTGGCTGCACATGTATGACGTG
CTTGGCGGTGGTGAAGAATATCTGTGCCGCCTCGGAGGCACGGCTTTGAG
CGATCTGACAGGCCGGACGGATTCCCGTGACCGGTCGATCTCCACACTTC
CATATCCCGTTTTTGTACGCCTGAAACAGGCCCTTGACTGGGTCGTGCGG
ACGCGGGCGCCATTACGCACCTATAATCCTTCAACATCCATTCCTGGGCA
GGAATTTCAGGGCAGTGAGTCTTTCTTTGCGCCATTATCGAATGATGGCG
CCGCCATTGACGTGATTATAGGGGCCACTATGCTGAACAATCGCAAATAG
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