mRNA_P-wetherbeei_contig148.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig148.6.1 vs. uniprot
Match: D8LT94_ECTSI (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT94_ECTSI) HSP 1 Score: 229 bits (585), Expect = 6.520e-68 Identity = 124/277 (44.77%), Postives = 181/277 (65.34%), Query Frame = 1
Query: 1 IRDNQVKQHFGERYPNVQDIINRLLKDHRIRLEQDKTTNELVYCYVPEELGGKLKDISSEHMMVYQAIERSGNKGVWTADLKRLTSLAQTQMTKCLKDLEKRQLVKSVKSVNARSKKLYMLIDLVPAKDITGGPWYTDNEFDHDFVDVLFNHIVKYVRKAKQATLLQIATELQGSGITDEVLQLDEVAQLINALIFDNRLEEVRYKGAVAAA---AQTGVQYKVAAAIHSAPNAWTSMPCGLCRVRNQCVEGGNISPQTCIYFKEWLAMSYSEDDIF 822
+ + + FGE YP + D+IN LL D+R++L + + + + Y V EE KL ++ E MM+YQ IE++GNKG+WT D+K T++ Q MTK LK LE R LVK+ KSV ++SKKLYML +L PAK+ITGGPWYTD EFD++FV L ++++ YV++ + L IA ++ SGI+ L ++EV +++ L++D LEEVR GA + A G YK+A A+ NA+T +PCG C+V C E G +SP+TC+Y EWL + S D++F
Sbjct: 29 VNSEVLSESFGEEYPLLVDVINSLLVDNRLQLSKGEN-DTMWYKLVQEEKAKKLMGLTPEQMMIYQVIEKAGNKGIWTRDIKTATNVNQNTMTKTLKSLEGRHLVKTAKSVTSKSKKLYMLYELTPAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQETPPLKDIAAAIKVSGISKIDLSMEEVKLIVSTLVYDGLLEEVR--GAASRFNRDAGDGPVYKMAPAVEVV-NAFTEVPCGTCKVMKHCSEDGVVSPKTCVYLAEWLNLPNS-DELF 300
BLAST of mRNA_P-wetherbeei_contig148.6.1 vs. uniprot
Match: A0A1V9ZF30_9STRA (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZF30_9STRA) HSP 1 Score: 217 bits (553), Expect = 2.970e-63 Identity = 116/284 (40.85%), Postives = 176/284 (61.97%), Query Frame = 1
Query: 1 IRDNQVKQHFGERYPNVQDIINRLLKDHRIRLEQDKTTNELVYCYVPEELGGKLKDIS----------SEHMMVYQAIERSGNKGVWTADLKRLTSLAQTQMTKCLKDLEKRQLVKSVKSVNARSKKLYMLIDLVPAKDITGGPWYTDNEFDHDFVDVLFNHIVKYVRKAKQATLLQIATELQGSGITDEVLQLDEVAQLINALIFDNRLEEVRYKGAVAAAAQTGVQYKVAAAIHSAPNAWTSMPCGLCRVRNQCVEGGNISPQTCIYFKEWLAMSYSEDDIF 822
+ DN +K+ FGE+Y + INRL+ + R+++ TT L+Y VP+E +++ +S EH V IE++GNKGVWT D+K T+LA+ + K ++ LE R LVK+VKS++ ++KKLYML DLVP++DITGGPWY + EFDHDF+D L N + +++R TL QI ++ SGI L +E+ ++N LI+D R+EEVR +A V YK+ + S +A + PCG+C V +QC +G +SP TC+Y +W+ ++ DD+F
Sbjct: 18 VSDNVIKKSFGEQYAKLPSCINRLVNESRVKILMQGTT--LMYQLVPKEEAERMQGLSYVAVNSNYHWGEHRAVLHEIEKAGNKGVWTRDIKSQTNLAEVTIRKIIRVLETRHLVKAVKSISQKNKKLYMLYDLVPSRDITGGPWYNEQEFDHDFIDTLSNFVCQFIRAKGVVTLQQITDKVHESGIAKVSLGPEEMMSIVNTLIYDERIEEVR-TARLANGEMREVSYKICRDV-SVFDALSEAPCGICPVFDQCADGNIVSPATCVYLTKWMNVA---DDLF 294
BLAST of mRNA_P-wetherbeei_contig148.6.1 vs. uniprot
Match: A0A067BY85_SAPPC (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BY85_SAPPC) HSP 1 Score: 210 bits (534), Expect = 1.400e-60 Identity = 111/274 (40.51%), Postives = 170/274 (62.04%), Query Frame = 1
Query: 1 IRDNQVKQHFGERYPNVQDIINRLLKDHRIRLEQDKTTNELVYCYVPEELGGKLKDISSEHMMVYQAIERSGNKGVWTADLKRLTSLAQTQMTKCLKDLEKRQLVKSVKSVNARSKKLYMLIDLVPAKDITGGPWYTDNEFDHDFVDVLFNHIVKYVRKAKQATLLQIATELQGSGITDEVLQLDEVAQLINALIFDNRLEEVRYKGAVAAAAQTGVQYKVAAAIHSAPNAWTSMPCGLCRVRNQCVEGGNISPQTCIYFKEWLAMSYSEDDIF 822
I D+ V++ FG++Y + INRL+ + RI++ + ++Y V +E +++ +S EH V IE+SGNKGVWT D+K T+L + + K ++ LE R LVK+VKS++ ++KKLYML DLVP++DITGGPWY + EFDHDF+D L + +++R TL QI ++ SGI L DE+ ++N LI+D R+EEVR +A V YK+ + S + + PCG+C V QC +G +SP TC+Y +W+ ++ DD+F
Sbjct: 18 IGDDVVRKSFGDQYAKLPVCINRLMGESRIKILMQGSN--VLYQLVTKEESERMQGLSGEHRAVLHEIEKSGNKGVWTRDIKMQTNLPEMTIRKIIRTLESRHLVKAVKSISQKNKKLYMLYDLVPSRDITGGPWYNEQEFDHDFIDTLSTFVCQFIRAKGVVTLQQITDKVHESGIAKVSLGPDEMMSIVNTLIYDERIEEVR-TARLANGEMRDVSYKICRDV-SVFDGLSEAPCGVCPVFEQCADGNIVSPATCVYLTKWMNVA---DDLF 284
BLAST of mRNA_P-wetherbeei_contig148.6.1 vs. uniprot
Match: A0A024U424_9STRA (DNA-directed RNA polymerase III subunit RPC6 n=8 Tax=Aphanomyces TaxID=100860 RepID=A0A024U424_9STRA) HSP 1 Score: 202 bits (515), Expect = 8.570e-58 Identity = 109/264 (41.29%), Postives = 163/264 (61.74%), Query Frame = 1
Query: 1 IRDNQVKQHFGERYPNVQDIINRLLKDHRIRLEQDKTTNELVYCYVPEELGGKLKDISSEHMMVYQAIERSGNKGVWTADLKRLTSLAQTQMTKCLKDLEKRQLVKSVKSVNARSKKLYMLIDLVPAKDITGGPWYTDNEFDHDFVDVLFNHIVKYVRKAKQATLLQIATELQGSGITDEVLQLDEVAQLINALIFDNRLEEVRYKGAVAAAAQTGVQYKVAAAIHSAPNAWTSMPCGLCRVRNQCVEGGNISPQTCIYFKEWL 792
I D QV+ F Y + +IN L+ D RI++ Q L+Y V +E +++ ++ E V IE++GNKG+WT D+K T++ + + K ++ LE R LVK+VKS++ ++KKLYML DLVP++DITGGPWY + EFDHDF+D L N + +++R TL QI ++ SGI L DE+ ++N LI+D+R+EEVR +A+ V YKV+ + + + PCG+C V +QC +G ISP TCIY +WL
Sbjct: 18 ISDAQVRDSFRAEYDKLPGVINELVTDGRIKIFQQN--GNLMYGLVAKEEAERMRGLTVEQRGVLHEIEKAGNKGIWTRDIKAKTNIPEVIIRKTIRLLETRHLVKAVKSISQKNKKLYMLFDLVPSRDITGGPWYNEQEFDHDFIDTLRNFVCQFIRAKGIVTLKQITDKVHESGIAKVSLGPDEMMSILNTLIYDDRVEEVR-AARLASGEWREVSYKVSREVTDF-DTLSDTPCGVCPVFDQCADGNIISPATCIYLTKWL 277
BLAST of mRNA_P-wetherbeei_contig148.6.1 vs. uniprot
Match: A0A7R9U7U3_9STRA (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7U3_9STRA) HSP 1 Score: 202 bits (515), Expect = 1.590e-57 Identity = 107/268 (39.93%), Postives = 161/268 (60.07%), Query Frame = 1
Query: 1 IRDNQVKQHFGERYPNVQDIINRLLKDHRIRL--EQDKTTNELVYCYVPEELGGKLKDISSEHMMVYQAIERSGNKGVWTADLKRLTSLAQTQMTKCLKDLEKRQLVKSVKSVNARSKKLYMLIDLVPAKDITGGPWYTDNEFDHDFVDVLFNHIVKYVRKAKQATLLQIATELQGSGITDEVLQLDEVAQLINALIFDNRLEEVRYKGAVAAAAQTGVQYKVAAAIHSAPNAWTSMPCGLCRVRNQCVEGGNISPQTCIYFKEWLAM 798
+ D ++ FG+ Y + D++N +L+ R+ + D T LVY V E KL+ ++ E ++YQ I+++GNKG+WT + T++ Q +TK LK LE+RQL+KSVKSV +R KKLYML + VPA +ITGG WY++ EFDH+FV + + Y+++ + A+L IA ++ +G + L D+V Q++ +LIFD R+E V+ G Y+ I + P T PCG+C V NQC EGG ISP TC+Y WL +
Sbjct: 36 VSDELLQHEFGKEYGKLADVLNTMLEQRRVTILRAHDDT---LVYKLVSAEKASKLQGLTREQELIYQEIKKAGNKGIWTRKITTETNVQQQVLTKTLKLLEQRQLIKSVKSVTSRRKKLYMLFEEVPATEITGGAWYSEGEFDHEFVSSMSQFVYTYIKQGESASLQDIAKAVRETGFSKVDLSTDDVQQIVESLIFDGRVERVQNPILTQMGLDNGPLYRSKPKI-TTPQFVTENPCGICPVANQCCEGGVISPATCVYMNHWLEL 299
BLAST of mRNA_P-wetherbeei_contig148.6.1 vs. uniprot
Match: A0A485KM43_9STRA (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KM43_9STRA) HSP 1 Score: 199 bits (505), Expect = 3.020e-56 Identity = 110/270 (40.74%), Postives = 166/270 (61.48%), Query Frame = 1
Query: 1 IRDNQVKQHFGERYPNVQDIINRLLKDHRIRLEQDKTTNELVYCYVPEELGGKLKDISS------EHMMVYQAIERSGNKGVWTADLKRLTSLAQTQMTKCLKDLEKRQLVKSVKSVNARSKKLYMLIDLVPAKDITGGPWYTDNEFDHDFVDVLFNHIVKYVRKAKQATLLQIATELQGSGITDEVLQLDEVAQLINALIFDNRLEEVRYKGAVAAAAQTGVQYKVAAAIHSAPNAWTSMPCGLCRVRNQCVEGGNISPQTCIYFKEWL 792
I D QV++ F + Y + +IN L+ D RI++ Q N L+Y V +E +++ ++ E V IE+SGN G+WT D+K T++ + + K ++ LE RQLVK+VKS++ ++KKLYM+ DLVP++DITGGPWY + EFDHDF+D L N + ++++ TL QI ++ SGI L DE+ ++N LI+D R+EEVR +A+ V YKV+ + S + + PCG+C V +QC +G ISP TCIY +WL
Sbjct: 18 ISDAQVREAFRDEYGKLPAVINELMGDGRIKIFQQG--NNLMYGLVAKEEAERMRGLTYDSGTCVEQRAVLHEIEKSGNTGIWTRDIKTKTNIPEVIIRKTIRLLETRQLVKAVKSISQKNKKLYMMFDLVPSRDITGGPWYNEQEFDHDFIDTLRNFVCQFIKAKGIVTLQQITDKVHESGIAKVSLGPDEMMSILNTLIYDERVEEVR-AARLASGEWRDVSYKVSKEV-SDFDTLSETPCGVCPVFDQCADGNVISPATCIYLTKWL 283
BLAST of mRNA_P-wetherbeei_contig148.6.1 vs. uniprot
Match: A0A2D4BDY6_PYTIN (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BDY6_PYTIN) HSP 1 Score: 196 bits (498), Expect = 3.940e-55 Identity = 110/265 (41.51%), Postives = 166/265 (62.64%), Query Frame = 1
Query: 1 IRDNQVKQHF-GERYPNVQDIINRLLKDHRIRLEQDKTTNELVYCYVPEELGGKLKDISSEHMMVYQAIERSGNKGVWTADLKRLTSLAQTQMTKCLKDLEKRQLVKSVKSVNARSKKLYMLIDLVPAKDITGGPWYTDNEFDHDFVDVLFNHIVKYVRKAKQATLLQIATELQGSGITDEVLQLDEVAQLINALIFDNRLEEVRYKGAVAAAAQTGVQYKVAAAIHSAPNAWTSMPCGLCRVRNQCVEGGNISPQTCIYFKEWL 792
+ D +V++ F G Y + +IN L+ + RI+ Q + L Y V E ++K ++ E +V Q IER+GNKGVWT D+K T++ Q +TK L+ LE R+LVKSVKS+++++KKLYML DLVP+ +ITGGPWY + EFDH F+D L + + ++ + +TL I ++ SGI+ L DE+ +I L++D R+EEVR + A +YK++ I S NA + PCG+C V +QC EG ISP++C+Y +WL
Sbjct: 29 LTDAEVREAFAGGEYERLPTVINALMGEGRIKXFQRGSV--LSYGVVGAEEAERIKGLTIEQRLVLQEIERAGNKGVWTRDIKTHTNIPQQIVTKTLRVLESRRLVKSVKSISSKNKKLYMLFDLVPSTEITGGPWYNEQEFDHVFIDTLSTFVYEVIKASGMSTLKAITDKVHASGISKVALGPDEIRSIIQTLMYDGRVEEVRAVR-LTPGANHETKYKISQEI-STFNALSETPCGVCPVFDQCQEGNVISPRSCLYLTKWL 289
BLAST of mRNA_P-wetherbeei_contig148.6.1 vs. uniprot
Match: A0A4D9CUF8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUF8_9STRA) HSP 1 Score: 205 bits (522), Expect = 4.640e-55 Identity = 109/266 (40.98%), Postives = 173/266 (65.04%), Query Frame = 1
Query: 1 IRDNQVKQHFGERYPNVQDIINRLLKDHRIRLEQDKTTNELVYCYVPEELGGKLKDISSEHMMVYQAIERSGNKGVWTADLKRLTSLAQTQMTKCLKDLEKRQLVKSVKSVNARSKKLYMLIDLVPAKDITGGPWYTDNEFDHDFVDVLFNHIVKYVRKAKQATLLQIATE-LQGSGITDEVLQLDEVAQLINALIFDNRLEEVRYKGAVAAAAQTGVQ-YKVAAAIHSAPNAWTSMPCGLCRVRNQCVEGGNISPQTCIYFKEWL 792
+R+ Q+++HF ERY ++ IIN L ++ IR + ++ NELVY V L K++++ +E ++VYQ +E++GNKG+W D++ TSL Q + K LK+LE RQLVKS S++++++KLY+L DL PAK+ITGGPWYT++EFDH+F++ L I ++++ ++ L I + ++ SG++ L EV +IN+L +D ++E V+ A + G YK++ + + N +T PCG C V+ QC EGG ISP C YF WL
Sbjct: 377 LRNEQLREHFTERYLHLVPIINSCLAENLIRCMKTES-NELVYQAVDPNLAEKMRNLGAEQLLVYQVVEKAGNKGIWHKDIRSQTSLQQPALKKILKNLESRQLVKSTSSISSKTRKLYLLYDLEPAKEITGGPWYTEHEFDHEFIEELSRAIYLFIKQQRKPPSLGIIVDYVRNSGVSKVELAPGEVQLIINSLAYDMKIEPVQNSLVGALPSSDGTPCYKISRQV-TPLNHFTDFPCGRCPVQAQCEEGGEISPANCRYFNVWL 640
BLAST of mRNA_P-wetherbeei_contig148.6.1 vs. uniprot
Match: A0A6G0WWY0_9STRA (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WWY0_9STRA) HSP 1 Score: 195 bits (496), Expect = 5.470e-55 Identity = 105/265 (39.62%), Postives = 169/265 (63.77%), Query Frame = 1
Query: 1 IRDNQVKQHFGERYPNVQDIINRLLKDHRIRLEQDKTTNELVYCYVPEELGGKLKDISSEHMMVYQAIERSGNKGVWTADLKRLTSLAQTQMTKCLKDLEKRQLVKSVKSVNARSKKLYMLIDLVPAKDITGGPWYTDNEFDHDFVDVLFNHIVKYVRKAKQATLLQIATELQGSGITDEVLQLDEVAQLINALIFDNRLEEVRYKGAVAAAAQTG-VQYKVAAAIHSAPNAWTSMPCGLCRVRNQCVEGGNISPQTCIYFKEWL 792
I D +V++ F + Y + +IN L+++ RIR+ + + N L+Y V +E +++ +++E + V + IE SGNKG+WT D+K T++ + + K +K LE RQL+K+VKS+ +++KLYM DL P++DITGGPWY + EFDH F+D L + + +++ TL QI ++ SGIT L DE+ ++N LI++ R+EEVR A + G V+YKV+ + S ++ + PCG+C V +QC +G ISP TC+Y +WL
Sbjct: 18 ISDAKVRETFHDEYAKLPPVINNLMREGRIRIFK-QGANSLMYGLVAKEEAERMRGLTAEQIAVLREIEGSGNKGIWTRDIKTKTNIPEVIIRKTIKILETRQLIKAVKSIAQKNRKLYMKFDLDPSRDITGGPWYNEQEFDHGFIDALRDFVCGFIKAKGVVTLKQITDQVHESGITRVSLGPDEMMSILNTLIYEERVEEVR--AIRIAHGEVGEVKYKVSKDV-SDFDSLSETPCGICPVFDQCADGNIISPATCVYLTKWL 278
BLAST of mRNA_P-wetherbeei_contig148.6.1 vs. uniprot
Match: A0A0W8DBA8_PHYNI (DNA-directed RNA polymerase III subunit RPC6 n=24 Tax=Peronosporaceae TaxID=4777 RepID=A0A0W8DBA8_PHYNI) HSP 1 Score: 195 bits (496), Expect = 6.700e-55 Identity = 108/270 (40.00%), Postives = 169/270 (62.59%), Query Frame = 1
Query: 1 IRDNQVKQHF----GERYPNVQDIINRLLKDHRIRLEQDKTTNELVYCYVPEELGGKLKDISSEHMMVYQAIERSGNKGVWTADLKRLTSLAQTQMTKCLKDLEKRQLVKSVKSVNARSKKLYMLIDLVPAKDITGGPWYTDNEFDHDFVDVLFNHIVKYVRKAKQATLLQIATELQGSGITDEVLQLDEVAQLINALIFDNRLEEVRYKGAVAAAAQTGVQYKVAAAIHSAPNAWTSMPCGLCRVRNQCVEGGNISPQTCIYFKEWLAM 798
+ D +V+ +F G Y + D+IN LL + +I++ K + L Y V E +++ ++ E +V Q IER+GNKG+WT D+K T++ Q +TK L+ LE R+LVKSVKS+++++KKLYML DLVP+ +ITGGPWY + EFDH F+D L + + ++ + +TL I ++ SGI+ L +E+ +I L++D R+EEVR +A V+YKV+ I + N + PCG+C V +QC EG ISP++C+Y +WL +
Sbjct: 27 VTDAEVRDYFQAEGGGGYEQLPDVINALLTEGKIKIF--KKGSVLSYGIVDAEEAERIRGLTLEQRLVLQEIERAGNKGIWTRDIKSHTNIPQQIVTKTLRLLETRRLVKSVKSISSKNKKLYMLFDLVPSTEITGGPWYNEQEFDHVFIDTLSTFVYEVIKASGMSTLNAITDKVHASGISKVALGPEEIRSIIQTLMYDGRVEEVR-------SASHEVKYKVSQQITTF-NYLSETPCGVCPVFDQCQEGNVISPRSCLYMTKWLGL 286 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig148.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig148.6.1 >prot_P-wetherbeei_contig148.6.1 ID=prot_P-wetherbeei_contig148.6.1|Name=mRNA_P-wetherbeei_contig148.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=214bp MMVYQAIERSGNKGVWTADLKRLTSLAQTQMTKCLKDLEKRQLVKSVKSVback to top mRNA from alignment at P-wetherbeei_contig148:8403..11450+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig148.6.1 ID=mRNA_P-wetherbeei_contig148.6.1|Name=mRNA_P-wetherbeei_contig148.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3048bp|location=Sequence derived from alignment at P-wetherbeei_contig148:8403..11450+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig148:8403..11450+ >mRNA_P-wetherbeei_contig148.6.1 ID=mRNA_P-wetherbeei_contig148.6.1|Name=mRNA_P-wetherbeei_contig148.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=642bp|location=Sequence derived from alignment at P-wetherbeei_contig148:8403..11450+ (Phaeothamnion wetherbeei SAG_119_79)back to top |