mRNA_P-wetherbeei_contig1444.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1444.1.1
Unique NamemRNA_P-wetherbeei_contig1444.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1444.1.1 vs. uniprot
Match: A0A836CNG6_9STRA (tRNA pseudouridine(55) synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNG6_9STRA)

HSP 1 Score: 212 bits (540), Expect = 2.080e-55
Identity = 127/222 (57.21%), Postives = 146/222 (65.77%), Query Frame = 2
Query: 1286 RKGLWSVHEIVGEPFEPLVERGDAGRVKLHGAGREDIDVRMLGRGRPFVLELVGCLHGAAAVAAALPALQADVNAATGRNEGGMVEAYDMKVVPRGLYDVMAVEAAEKRKWYCCVVWTSGTVSTERL-VALEAM---TDLKVQQKTPIRVLHRRTLSIREKMIHSMRCERINDHFFVLRLSTSAGTYVKEFVHGDLGRTAPSVGSLLGCRADILQLDVDKVE 1939
            R G  SV EIV  P E L    +   VKL GAGRED+DVRMLG GRPFVLE++     A  +A ALP LQ +VNA TG N  G VE  D K+V R +Y  +   A  KRK Y CVVWTS  VS   L  AL A     DL+V+Q TP+RVLHRR    R K + ++R  R+   FFVL L+TSAGTYVKEFVHGDLGRT PSVG+LLGCRADILQLDV  V+
Sbjct:  454 RIGDASVQEIVAAPLEALARCRE---VKLAGAGREDMDVRMLGNGRPFVLEVIDSKVTAQQLADALPRLQREVNACTGLNSEGAVEVSDFKLVGRDIYSQIQEGAEGKRKHYRCVVWTSRDVSQAELDAALHAHPPGADLEVRQSTPVRVLHRRAALTRVKTVRALRAARVAPRFFVLSLTTSAGTYVKEFVHGDLGRTVPSVGALLGCRADILQLDVVGVD 672          
BLAST of mRNA_P-wetherbeei_contig1444.1.1 vs. uniprot
Match: D8LRA8_ECTSI (tRNA pseudouridine(55) synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRA8_ECTSI)

HSP 1 Score: 207 bits (528), Expect = 1.600e-54
Identity = 129/225 (57.33%), Postives = 147/225 (65.33%), Query Frame = 2
Query: 1289 KGLWSVHEIVGEPFEPLVERGDAGRVK--LHGAGREDIDVRMLGRGRPFVLELVGCLHGAAAVAAALPALQADVNAATG-RNEGGMVEAYDMKVVPRGLY--DVMAVEAAEKRKWYCCVVWTSGTVSTERLVAL---EAMTDLKVQQKTPIRVLHRRTLSIREKMIHSMRCERINDHFFVLRLSTSAGTYVKEFVHGDLGRTAPSVGSLLGCRADILQLDVDKVE 1939
            KG +SV E V EPF+       +G V+  LHGAGRED+DVRMLG+GRPF LELV  L     +AA LP+L   VN A G +N GG V    ++V   G    DV AV    KRK Y CVVW S  V  E LV     +A  +L VQQ TPIRVLHRRTL  R + I  MR E IN+HFF L L+TSAGTY+KEFVHGDLGRT PS+GSLL CRADILQLDV  VE
Sbjct:  364 KGFYSVQEAVSEPFQAF-----SGCVEGLLHGAGREDVDVRMLGKGRPFCLELVDSLRSVDEIAARLPSLADAVNTAGGVKNAGGGVAVSRLQVSGPGELPSDVQAVGEG-KRKHYRCVVWVSRPVGKEELVKALCEDAPEELVVQQATPIRVLHRRTLLDRPRSIFGMRAEWINEHFFQLELATSAGTYIKEFVHGDLGRTVPSIGSLLDCRADILQLDVTNVE 582          
BLAST of mRNA_P-wetherbeei_contig1444.1.1 vs. uniprot
Match: A0A6H5KZN5_9PHAE (tRNA pseudouridine(55) synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZN5_9PHAE)

HSP 1 Score: 211 bits (537), Expect = 2.000e-54
Identity = 149/348 (42.82%), Postives = 171/348 (49.14%), Query Frame = 2
Query:  920 AGGEPPSLEVGVRRESIFIQGRYVKLSREVPQSPWMVDDDAILDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLDSTAVNSCXXXXXRKGLWSVHEIVGEPFEPLVERGDAGRVK--LHGAGREDIDVRMLGRGRPFVLELVGCLHGAAAVAAALPALQADVNAATG-RNEGGMVEAYDMKVVPRGLY--DVMAVEAAEKRKWYCCVVWTSGTVSTERLVAL---EAMTDLKVQQKTPIRVLHRRTLSIREKMIHSMRCERINDHFFVLRLSTSAGTYVKEFVHGDLGRTAPSVGSLLGCRADILQLDVDKVE 1939
            +GG     EV +RR+SI   GRY KLSR VPQ+PW                                                                                        KG +SV E V EPF+       +G V+  LHGAGRED+DVRMLG+GRPF LELV  L     +AA LP+L   VN A G +N GG V    ++V   G    DV AV    KRK Y CVVW S  V  E LV     +A  +L VQQ TPIRVLHRRTL  R + I  MR E IN+HFF L L+TSAGTY+KEFVHGDLGRT PS+GSLL CRADILQLDV  VE
Sbjct:  534 SGGAEALCEVAIRRKSIHFWGRYTKLSRSVPQTPWF---------------------------------------------------------------------------------------KGFYSVQEAVSEPFQAF-----SGCVEGLLHGAGREDVDVRMLGKGRPFCLELVDSLRSVDEIAARLPSLADAVNTAGGVKNVGGGVAVSRLRVAGPGELPSDVQAVGEG-KRKHYRCVVWVSRPVGKEELVKALCEDAPEELVVQQATPIRVLHRRTLLDRPRSIFGMRAEWINEHFFQLELATSAGTYIKEFVHGDLGRTVPSIGSLLDCRADILQLDVTNVE 788          
BLAST of mRNA_P-wetherbeei_contig1444.1.1 vs. uniprot
Match: A0A067D9A4_SAPPC (tRNA pseudouridine(55) synthase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D9A4_SAPPC)

HSP 1 Score: 201 bits (511), Expect = 5.210e-53
Identity = 116/222 (52.25%), Postives = 143/222 (64.41%), Query Frame = 2
Query: 1286 RKGLWSVHEIVGEPFEPLVERGDAGRVKLHGAGREDIDVRMLGRGRPFVLELVGCLHGAAAVAAALPA-----LQADVNAATGRNEGGMVEAYDMKVVPRGLYDVMAVEAAEKRKWYCCVVWTSGTVSTERLVALEAMTDLKVQQKTPIRVLHRRTLSIREKMIHSMRCERINDHFFVLRLSTSAGTYVKEFVHGDLGRTAPSVGSLLGCRADILQLDVDKV 1936
            R G  SV E +G+   P+     A   K H AGRED+DVRMLG GRPF+LEL+       A  A LPA     +QA VNAA       +VE  ++    +  +  +   A  KRK YCCVVWTSG ++ ER+  L  + DL+V QKTP+RVLHRRTL  R K+IH    E +NDH+ +LRL+TSAGTYVKEFVHGDLGRT P+V SLLGC ADILQLDV+ +
Sbjct:  270 RMGDSSVEEAIGDIISPVF---GAKSYKFHTAGREDVDVRMLGNGRPFILELLD------AKVATLPADMYATVQAQVNAAN----TDIVEIRELSSATKEGFAALQSGADSKRKTYCCVVWTSGVLTPERVAILNGICDLRVGQKTPVRVLHRRTLLTRPKVIHDASVELLNDHYMLLRLTTSAGTYVKEFVHGDLGRTYPNVASLLGCDADILQLDVENL 478          
BLAST of mRNA_P-wetherbeei_contig1444.1.1 vs. uniprot
Match: D0NE04_PHYIT (tRNA pseudouridine(55) synthase n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NE04_PHYIT)

HSP 1 Score: 198 bits (504), Expect = 3.690e-52
Identity = 175/610 (28.69%), Postives = 273/610 (44.75%), Query Frame = 2
Query:  125 GACWHCLLRTCTGFEGHHEPFEATLEELQSSLRNAGEDLLPTFSELFVPRQKV-CTLCLGLFPVCVVEDAAGSSSSQGDGGLKIVRSCTEVVRASGHKVSSFRLSISLPSSVTVREAAVMHDEEA-LPGSSRGLPVDLKGTLQTALADRLATAL-GVPHNPASDFWIEVTVR--DSAGDLEAACALQLATKDEGNGXXXXXXXXXXXXXXXXWKRQRRQAHPPVEGTFRLSQGAAGKALSKPTAEQKEALRAWHADGVPSIGDRSCGGVAAGGEPPSLEVGVRRESIFIQGRYVKLSREVPQSPWMVDDDAILDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLDSTAVNSCXXXXXRKGLWSVHEIVGEPFEPLVERGDAGRVKLHGAGREDIDVRMLGRGRPFVLELVGCLHGAAAVAAALPALQAD-VNAATGRNEGGMVEAYDMKVVPRGLYDVMAVEAAEKRKWYCCVVWTSGTVSTERLVALEAMTDLKVQQKTPIRVLHRRTLSIREKMIHSMRCERINDHFFVLRLSTSAGTYVKEFVHGDLGRTAPSVGSLLGCRADILQLDVDKV 1936
            G C  C LR   G E   + +  T E+L  ++ +  ++     S +  P++ V CT C+G+      E              KI+    ++   + + V +F L+I LPS V +RE A++    + +    R +P D+K  L++ LA  ++  L        S+F + V ++  +SA ++    A+    K + +G                  R+R +  PPV   F    GA  +AL+  T+   E++++      PS    +          P       R+S+++QGRY+K  R + Q+PW++D                                                                                    R G  SV E +G+   P   RG +   K H AGRED+DVRMLG GRPF+LE++G         A L   + D +  A      G VE   +K   +  +  +   A  K+K YCCVVW+ G ++ E +  ++++ DL +QQ+TP+RVLHRRTL  R K+IH+ +CE +N H+ +LRL+TSAGTYVKEFVH D GRT P++ S+LGC ADI+QLDV+ +
Sbjct:   24 GVCDRCCLRFA-GVEDS-DVYAYTEEKLADAMNDFIKE-----SGVVEPKEVVGCTCCVGVLNGAFHE--------------KILADVQQLAEEADYDVKAFSLNIKLPSVVLLREYALLKFLRSNVDNFPRKIPFDMKDVLKSLLAPTISRMLKNAECATKSEFAVLVDIKHDESADEVRQIPAI----KKQLDGT-----------------RKRGRGPPPVFDGF----GAVSRALAALTS-MPESIKS-----PPSRLTTA----------PEAAASFERDSVYMQGRYLKFQRGLSQTPWVLDG----------------------------------------------------------------------------------VRMGESSVEECIGDVALPFF-RGSS--YKFHTAGREDVDVRMLGNGRPFILEILG---------AYLSEDEYDQIQKAANDANNGAVEIVQVKSSTKDYFAALQAGADSKKKTYCCVVWSEGELTPEAIAKIDSIQDLTIQQQTPVRVLHRRTLMTRPKIIHAAKCEVLNKHYMLLRLTTSAGTYVKEFVHSDRGRTNPNIASILGCDADIIQLDVESL 477          
BLAST of mRNA_P-wetherbeei_contig1444.1.1 vs. uniprot
Match: G4Z6B4_PHYSP (tRNA pseudouridine(55) synthase n=4 Tax=Phytophthora TaxID=4783 RepID=G4Z6B4_PHYSP)

HSP 1 Score: 198 bits (503), Expect = 5.790e-52
Identity = 183/624 (29.33%), Postives = 269/624 (43.11%), Query Frame = 2
Query:   95 TPFLEAAARSGACWHCLLRTCTGFEGHHEPFEATLEELQSSLRNAGEDLLPTFSELFVPRQKV--CTLCLGLFPVCVVEDAAGSSSSQGDGGLKIVRSCTEVVRASGHKVSSFRLSISLPSSVTVREAAVMH----DEEALPGSSRGLPVDLKGTLQTALADRLATAL-GVPHNPASDFWIEVTVR--DSAGDLEAACALQLATKDEGNGXXXXXXXXXXXXXXXXWKRQRRQAHPPVEGTFRLSQGAAGKALSKPTAEQKEALRAWHADGVPSIGDRSCGGVAAGGEPPSLEVGVRRESIFIQGRYVKLSREVPQSPWMVDDDAILDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLDSTAVNSCXXXXXRKGLWSVHEIVGEPFEPLVERGDAGRVKLHGAGREDIDVRMLGRGRPFVLELVGCLHGAAAVAAALPALQAD-VNAATGRNEGGMVEAYDMKVVPRGLYDVMAVEAAEKRKWYCCVVWTSGTVSTERLVALEAMTDLKVQQKTPIRVLHRRTLSIREKMIHSMRCERINDHFFVLRLSTSAGTYVKEFVHGDLGRTAPSVGSLLGCRADILQLDVDKV 1936
            T  L+ A   G C  C LR     +       A  EE    L +A  + +     L    Q+V  CT C+G+      E              KI+    ++   + + V +F L+I LPS V +RE +++     D E  P   R +P D+K  L++ LA  ++  L        S+F + + V+  +SA ++    A++   ++                      R+R +  PPV   F    GA  +AL+        AL +   D + S   R           P       R+S+++QGRY+K  R + Q+PW++D +                                                                                  R G  SV E +G+   P   RG     K H AGRED+DVRMLG GRPF+LE++       A  A L   + D +  A      G VE   +K   +  +  +   A  K+K YCCVVW+ G ++ E +  ++A+ DL +QQ+TPIRVLHRRTL  R K+IH+ +CE +N H+ +LRL+TSAGTYVKEFVHGD GRT P+V S+LGC ADI+QLDV+ +
Sbjct:   14 TEGLQRARELGVCVRCCLRFA---DIDDSDIYACSEE---KLVDAVHEFVKESGVLGFEPQEVSGCTCCVGVLNGTFHE--------------KILADVQQLADKADYDVKAFSLNIKLPSVVMLREYSLLQFLRSDVENFP---RKMPFDMKDVLKSFLAPSISKMLKNAECANGSEFSVLIDVKHDESADEVRQIPAIKKQLENT---------------------RKRGRGPPPVFDGF----GAVSRALA--------ALGSSMPDTIKSPPARLT-------TEPHAVATFERDSVYMQGRYLKFQRGLSQTPWVLDGE----------------------------------------------------------------------------------RMGESSVEECIGDIALPFF-RGSG--YKFHTAGREDVDVRMLGNGRPFILEILD------AEKAYLDQSEYDQIEKAVNDANNGAVEIVKVKRSTKDYFAGLQTGADSKKKTYCCVVWSEGVLTPELVAKIDAIQDLTIQQQTPIRVLHRRTLMTRPKIIHAAKCEVLNKHYMLLRLTTSAGTYVKEFVHGDRGRTNPNVASILGCDADIIQLDVESL 483          
BLAST of mRNA_P-wetherbeei_contig1444.1.1 vs. uniprot
Match: A0A1V9Z0V9_9STRA (tRNA pseudouridine(55) synthase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z0V9_9STRA)

HSP 1 Score: 197 bits (502), Expect = 8.150e-52
Identity = 112/217 (51.61%), Postives = 136/217 (62.67%), Query Frame = 2
Query: 1286 RKGLWSVHEIVGEPFEPLVERGDAGRVKLHGAGREDIDVRMLGRGRPFVLELVGCLHGAAAVAAALPALQADVNAATGRNEGGMVEAYDMKVVPRGLYDVMAVEAAEKRKWYCCVVWTSGTVSTERLVALEAMTDLKVQQKTPIRVLHRRTLSIREKMIHSMRCERINDHFFVLRLSTSAGTYVKEFVHGDLGRTAPSVGSLLGCRADILQLDVDKV 1936
            R G  SV E +G+   P      A   K H AGRED+DVRMLG GRPF+LEL+      A VA   P   A V          +VE  ++    +  +  +   A  KRK YCCVVWTSG ++  R+  L  + DLKV QKTP+RVLHRRTL  R K+IH  R E +NDH+ +LRL+TSAGTYVKEFVHGDLGRT P+V SLLGC ADILQLDV+ +
Sbjct:  265 RMGDSSVEEAIGDVIAPEFR---AKSYKFHTAGREDVDVRMLGNGRPFILELLD-----AKVATLSPEAFATVQNRVNAANLDVVEVRELTGATKEGFAALQSGADSKRKTYCCVVWTSGVLTPARVATLNGIVDLKVAQKTPVRVLHRRTLLTRPKVIHDARVEVLNDHYMLLRLTTSAGTYVKEFVHGDLGRTFPNVASLLGCDADILQLDVENL 473          
BLAST of mRNA_P-wetherbeei_contig1444.1.1 vs. uniprot
Match: A0A3R7CT38_9STRA (tRNA pseudouridine(55) synthase (Fragment) n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7CT38_9STRA)

HSP 1 Score: 189 bits (481), Expect = 8.340e-52
Identity = 106/211 (50.24%), Postives = 137/211 (64.93%), Query Frame = 2
Query: 1298 WSVHEIVGEPFEPLVERGDAGRVKLHGAGREDIDVRMLGRGRPFVLELVGCLHGAAAVAAALPALQADVNAATGRNEGGMVEAYDMKVVPRGLYDVMAVEAAEKRKWYCCVVWTSGTVSTERLVALEAMTDLKVQQKTPIRVLHRRTLSIREKMIHSMRCERINDHFFVLRLSTSAGTYVKEFVHGDLGRTAPSVGSLLGCRADILQLDVD 1930
            WS  + V    + ++    A   K H AGRED+DVRMLG GRPF+LEL+G   G A VA AL  +  + NA         VE    ++  +  + V+   A  KRK YCCVVW +  ++ +R+  L +++DL V QKTP+RVLHRRTL  R K+IHS     +NDH+ +LRL+TSAGTYVKEFVHGDLGRT P+V +LLGC ADILQLDV+
Sbjct:   28 WSGRQDVDAIGDIVLPHFHAKSYKFHTAGREDVDVRMLGNGRPFILELIG---GRAPVARALRKVN-ETNA-------DRVEIRGFQLTDKKRFSVLQAGADSKRKTYCCVVWVAEKLTPDRVATLNSISDLAVAQKTPVRVLHRRTLLTRPKVIHSANVTVLNDHYMLLRLTTSAGTYVKEFVHGDLGRTLPNVSTLLGCDADILQLDVE 227          
BLAST of mRNA_P-wetherbeei_contig1444.1.1 vs. uniprot
Match: UPI000B78FB42 (putative tRNA pseudouridine synthase Pus10 n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B78FB42)

HSP 1 Score: 197 bits (501), Expect = 1.970e-51
Identity = 171/565 (30.27%), Postives = 244/565 (43.19%), Query Frame = 2
Query:  281 VCTLCLGLFP-VCVVEDAAGSSSSQGDGGLKIVRSCTEVVRASGHKVSSFRLSISLPSSVTVREAAVM-------HDEEALPGSSRGLPVDLKGTLQTALADRLATALGVPHNPASDFWIEVTVRDSAGDLEAACALQLATKDEGNGXXXXXXXXXXXXXXXXWKRQRRQAHPPVEGTFRLSQGAAGKALSKPTAEQKEALRAWHADGVPSIGDRSCGGVAAGGEPPSLEVGVRRESIFIQGRYVKLSREVPQSPWMVDDDAILDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLDSTAVNSCXXXXXRKGLWSVHEIVGEPFEPLVERGDAGRVKLHGAGREDIDVRMLGRGRPFVLELVGCLHGAAAVAAALPALQADVNAATGRNEGGMVEAYDMKVVPRGLYDVMAVEAAEKRKWYCCVVWTSGTVSTERLVALEAMTDLKVQQKTPIRVLHRRTLSIREKMIHSMRCERIND--HFFVLRLSTSAGTYVKEFVHGDLGRTAPSVGSLLGCRADILQLDVDKVEVN 1945
            +C++C G+   VCV E  A  +    +    ++    E+V+  GH   SF L +S+P  +   E AV          EE    + +   + +K +L+ ++ + L T LGV    +S F + +T   S   L+         K+   G                            E  F L Q A     +KP          W   G+P+                SLEV      I+I GRY+K SR V QS W++DD+                                                                                  R G  SV EIVG    PL  RGD    K H AGREDIDVRMLG GRPF+LE+       + ++  L  ++  +N+     EG +V+  ++KVV   ++ +M    AEK+K Y  +VW S  +  + L+ L  + DLK+ Q+TP+RVLHRR+   REK+IH M  E+++    FF+L L T AGTY+KEFVHGDLGRT PS+GS+LGCRA+ILQLDV  V+++
Sbjct:   83 ICSVCFGILQYVCVDEKQALVNRGCANDFAALIY---ELVKKEGHLADSFSLEVSIPPIIVENENAVRLSMKQKYSSEEWFQETLQSEAISVKDSLKLSIIEPLETLLGVKSG-SSSFRVRLTYTSSETPLKTDNG-----KENNQGSRKLKIGRSEI----------------TENDFNLKQCANNLLEAKPFRPH------WRRSGIPAC---------------SLEVLCSSTPIYIGGRYLKYSRNVSQSRWIIDDE----------------------------------------------------------------------------------RMGEASVEEIVGNSILPLC-RGD--NYKFHAAGREDIDVRMLGSGRPFLLEIQNPRMLPSELS--LKEMEMKINSL----EGKLVKVKNLKVVDEQVWTLMREGEAEKQKQYTALVWISRQLEDKDLMTLSLLKDLKLSQRTPVRVLHRRSPLEREKIIHWMNIEKMSGSTQFFLLHLCTQAGTYIKEFVHGDLGRTYPSLGSILGCRAEILQLDVTDVKMD 510          
BLAST of mRNA_P-wetherbeei_contig1444.1.1 vs. uniprot
Match: W2Q7W5_PHYPN (tRNA pseudouridine(55) synthase n=15 Tax=Phytophthora TaxID=4783 RepID=W2Q7W5_PHYPN)

HSP 1 Score: 194 bits (493), Expect = 1.350e-50
Identity = 174/607 (28.67%), Postives = 265/607 (43.66%), Query Frame = 2
Query:  131 CWHCLLRTCTGFEGHHEPFEATLEELQSSLRNAGEDLLPTFSELFVPRQKV--CTLCLGLFPVCVVEDAAGSSSSQGDGGLKIVRSCTEVVRASGHKVSSFRLSISLPSSVTVREAAVMHD-EEALPGSSRGLPVDLKGTLQTALADRLATAL-GVPHNPASDFWIEVTVRDSAGDLEAACALQLATKDEGNGXXXXXXXXXXXXXXXXWKRQRRQAHPPVEGTFRLSQGAAGKALSKPTAEQKEALRAWHADGVPSIGDRSCGGVAAGGEPPSLEVGVRRESIFIQGRYVKLSREVPQSPWMVDDDAILDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLDSTAVNSCXXXXXRKGLWSVHEIVGEPFEPLVERGDAGRVKLHGAGREDIDVRMLGRGRPFVLELVGCLHGAAAVAAALPALQAD-VNAATGRNEGGMVEAYDMKVVPRGLYDVMAVEAAEKRKWYCCVVWTSGTVSTERLVALEAMTDLKVQQKTPIRVLHRRTLSIREKMIHSMRCERINDHFFVLRLSTSAGTYVKEFVHGDLGRTAPSVGSLLGCRADILQLDVDKV 1936
            C  C LR   G E   E +  T EEL  ++ +  ++     S + V  ++V  CT C+G+      E              KI+    ++   + + V +F L+I LPS V +RE +++     ++    R +P D+K  L++ LA  ++  L        S+F + + ++      E      +  + EG                    R+R +  PPV   F    GA  +AL+  T    E +++     V ++              P+      R+S+++QGRY+K  R + Q+PW++D +                                                                                  R G  SV E +G+   P   RG     K H AGRED+DVRMLG GRPF+LE++       A  A L   + D +  A      G VE   +K   +  +  +   A  K+K YCCVVW+ G ++ E +  ++A+ DL +QQ+TPIRVLHRRTL  R K+IH+ +CE +N H+ +LRL+TSAGTYVKEFVHGD GRT P+V S+LG  ADI+QLDV+ +
Sbjct:   26 CVRCCLRFA-GIEDS-EVYACTEEELAGAVNDFIKE-----SGVEVESKEVVGCTCCVGVLNSAFHE--------------KILADVQQLSEKANYDVKAFSLNIKLPSVVLLREYSLLKFLRSSVDNFPRKMPFDMKDVLKSFLAPPVSRMLKNAECANKSEFSVLIDIKHDESADEVRQIPAIKKQLEGT-------------------RKRGRGPPPVFDGF----GAVSRALAALTT-MPETIKSPPTP-VTTV--------------PAAVATFERDSVYMQGRYLKFQRGLSQTPWVLDGE----------------------------------------------------------------------------------RMGESSVEECIGDIALPFF-RGSG--YKFHTAGREDVDVRMLGNGRPFILEILN------AKKAYLDQSEYDQIEKAVNDANNGAVEIVQVKSSTKDYFAGLQAGADSKKKTYCCVVWSEGVLTPEAIAKIDAIQDLTIQQQTPIRVLHRRTLMTRPKIIHAAKCEVLNKHYMLLRLTTSAGTYVKEFVHGDRGRTNPNVASILGSDADIIQLDVESL 481          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1444.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CNG6_9STRA2.080e-5557.21tRNA pseudouridine(55) synthase n=1 Tax=Tribonema ... [more]
D8LRA8_ECTSI1.600e-5457.33tRNA pseudouridine(55) synthase n=1 Tax=Ectocarpus... [more]
A0A6H5KZN5_9PHAE2.000e-5442.82tRNA pseudouridine(55) synthase n=1 Tax=Ectocarpus... [more]
A0A067D9A4_SAPPC5.210e-5352.25tRNA pseudouridine(55) synthase n=2 Tax=Saprolegni... [more]
D0NE04_PHYIT3.690e-5228.69tRNA pseudouridine(55) synthase n=2 Tax=Phytophtho... [more]
G4Z6B4_PHYSP5.790e-5229.33tRNA pseudouridine(55) synthase n=4 Tax=Phytophtho... [more]
A0A1V9Z0V9_9STRA8.150e-5251.61tRNA pseudouridine(55) synthase n=1 Tax=Achlya hyp... [more]
A0A3R7CT38_9STRA8.340e-5250.24tRNA pseudouridine(55) synthase (Fragment) n=1 Tax... [more]
UPI000B78FB421.970e-5130.27putative tRNA pseudouridine synthase Pus10 n=2 Tax... [more]
W2Q7W5_PHYPN1.350e-5028.67tRNA pseudouridine(55) synthase n=15 Tax=Phytophth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1444contigP-wetherbeei_contig1444:965..4500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LRA8
Model size2280
Max annot lvl2759|Eukaryota
KEGG koko:K07583
Hectar predicted targeting categoryother localisation
Exons6
Evalue1.49e-55
EggNOG OGsCOG1258@1|root,KOG2364@2759|Eukaryota
Ec32 ortholog descriptionPseudouridine synthase, catalytic domain
Ec32 orthologEc-06_003220.1
EC5.4.99.25
Descriptionpseudouridine synthase activity
Cds size2157
COG categoryJ
BRITEko00000,ko01000,ko03016
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1444.1.1prot_P-wetherbeei_contig1444.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1444 1011..4423 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186021.8998973-UTR-P-wetherbeei_contig1444:964..10101683186021.8998973-UTR-P-wetherbeei_contig1444:964..1010Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1444 965..1010 +
1683186021.9689558-UTR-P-wetherbeei_contig1444:4423..45001683186021.9689558-UTR-P-wetherbeei_contig1444:4423..4500Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1444 4424..4500 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186021.9116845-CDS-P-wetherbeei_contig1444:1010..19481683186021.9116845-CDS-P-wetherbeei_contig1444:1010..1948Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1444 1011..1948 +
1683186021.92104-CDS-P-wetherbeei_contig1444:2125..26421683186021.92104-CDS-P-wetherbeei_contig1444:2125..2642Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1444 2126..2642 +
1683186021.9305534-CDS-P-wetherbeei_contig1444:2883..29671683186021.9305534-CDS-P-wetherbeei_contig1444:2883..2967Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1444 2884..2967 +
1683186021.9400263-CDS-P-wetherbeei_contig1444:3373..34841683186021.9400263-CDS-P-wetherbeei_contig1444:3373..3484Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1444 3374..3484 +
1683186021.9494007-CDS-P-wetherbeei_contig1444:3728..37881683186021.9494007-CDS-P-wetherbeei_contig1444:3728..3788Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1444 3729..3788 +
1683186021.9592636-CDS-P-wetherbeei_contig1444:3976..44231683186021.9592636-CDS-P-wetherbeei_contig1444:3976..4423Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1444 3977..4423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1444.1.1

>prot_P-wetherbeei_contig1444.1.1 ID=prot_P-wetherbeei_contig1444.1.1|Name=mRNA_P-wetherbeei_contig1444.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=719bp
MEATARSAREVLSSSATPFLEAAARSGACWHCLLRTCTGFEGHHEPFEAT
LEELQSSLRNAGEDLLPTFSELFVPRQKVCTLCLGLFPVCVVEDAAGSSS
SQGDGGLKIVRSCTEVVRASGHKVSSFRLSISLPSSVTVREAAVMHDEEA
LPGSSRGLPVDLKGTLQTALADRLATALGVPHNPASDFWIEVTVRDSAGD
LEAACALQLATKDEGNGGGWGGRGGGGGGSTGGWKRQRRQAHPPVEGTFR
LSQGAAGKALSKPTAEQKEALRAWHADGVPSIGDRSCGGVAAGGEPPSLE
VGVRRESIFIQGRYVKLSREVPQSPWMVDDDAILDAASSSTAGGRAGANG
EASTDGGGGAGASSNGRADSSSGGASSGSVASSGDAGASSKGGGGGGAGL
DSTAVNSCGGGGGRKGLWSVHEIVGEPFEPLVERGDAGRVKLHGAGREDI
DVRMLGRGRPFVLELVGCLHGAAAVAAALPALQADVNAATGRNEGGMVEA
YDMKVVPRGLYDVMAVEAAEKRKWYCCVVWTSGTVSTERLVALEAMTDLK
VQQKTPIRVLHRRTLSIREKMIHSMRCERINDHFFVLRLSTSAGTYVKEF
VHGDLGRTAPSVGSLLGCRADILQLDVDKVEVNAAAAPTADAVAAATVGG
SGEAIRTDVGESFRNDGGRETVGNDGGGGGEGGCGGESGSYGGRTLEGAV
ETAGEGAAVAVAAAAANG*
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mRNA from alignment at P-wetherbeei_contig1444:965..4500+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1444.1.1 ID=mRNA_P-wetherbeei_contig1444.1.1|Name=mRNA_P-wetherbeei_contig1444.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3536bp|location=Sequence derived from alignment at P-wetherbeei_contig1444:965..4500+ (Phaeothamnion wetherbeei SAG_119_79)
ATTTTGACTGTTTCTCATATTGATCTGGAGGAGCCGCCAAAAGAAGATGG AAGCCACGGCCCGCTCTGCACGGGAAGTGCTATCGTCCTCTGCCACCCCG TTTTTGGAAGCCGCTGCGAGAAGTGGAGCCTGCTGGCACTGCTTGCTCCG GACATGCACTGGGTTTGAAGGACATCATGAACCCTTCGAGGCGACGCTGG AGGAGCTACAATCAAGCCTTCGCAACGCCGGCGAAGACCTCCTGCCGACA TTTTCCGAGCTATTTGTGCCGCGACAAAAAGTGTGCACCCTGTGTTTGGG CCTCTTCCCTGTCTGCGTCGTGGAAGACGCCGCAGGCAGTAGCAGCAGCC AAGGAGACGGGGGACTCAAAATTGTTCGGTCCTGTACCGAGGTGGTGCGT GCCAGCGGCCACAAAGTGTCCAGCTTCCGCCTCTCCATCTCACTGCCATC GTCGGTGACGGTCCGCGAGGCCGCCGTGATGCATGATGAGGAGGCCCTGC CCGGCAGCAGCCGCGGCTTGCCCGTCGACCTCAAGGGCACGCTACAGACG GCGCTGGCGGACCGCCTCGCGACCGCCCTCGGCGTTCCCCACAACCCGGC CAGCGACTTCTGGATCGAAGTAACCGTGCGAGACTCGGCCGGCGATCTGG AAGCCGCCTGCGCGCTGCAATTGGCGACAAAGGACGAAGGCAACGGCGGC GGGTGGGGCGGCCGAGGCGGCGGCGGCGGCGGCAGCACGGGCGGGTGGAA GCGGCAGCGGCGGCAGGCGCACCCGCCAGTCGAGGGCACCTTCCGGCTCA GTCAGGGTGCAGCGGGGAAGGCGCTCTCAAAACCGACGGCGGAGCAGAAG GAAGCGCTCCGCGCTTGGCACGCCGACGGTGTTCCGAGTATCGGCGACAG AAGCTGCGGCGGCGTCGCTGCAGGCGGGGAGCCGCCATCATTGGAAGTGG GCGTGCGCCGCGAGAGCATCTTTATCCAGGGCCGGTGAGTGAGAGTGCGG CGCTTGAACAGCGAACGCTCAGTGGCACGTAAAACGCCCTCCTCCTATTT CTGGTTATTTTTTAGGAAGAGATTTGGTTTGGCGAAACACGCTTTTTGGC GTCCTAATTTCTTCGTTCAACTGCTTCCTGCGGCCTGCCTCTCAATGTGA CCGGCCGGCAGTTATGTGAAACTGTCAAGGGAGGTGCCGCAGAGCCCGTG GATGGTGGATGACGATGCCATCCTCGACGCTGCTTCTTCCTCCACGGCGG GAGGGCGCGCAGGCGCTAATGGTGAAGCCTCCACAGACGGCGGTGGTGGT GCCGGCGCCAGCAGTAACGGTCGCGCCGACAGCAGCAGTGGCGGCGCCAG CAGCGGCAGCGTCGCCAGCAGCGGCGATGCAGGTGCCAGTAGCAAGGGCG GTGGCGGCGGCGGCGCCGGTCTCGATAGCACTGCGGTAAACAGCTGCGGC GGCGGCGGCGGCCGCAAGGGGCTCTGGTCGGTCCACGAGATCGTCGGGGA ACCCTTCGAGCCGCTTGTGGAGCGCGGCGACGCCGGGCGCGTCAAGCTGC ATGGCGCCGGCCGCGAGGACATTGACGTACGGATGCTGGGGCGGGGGCGC CCGTTCGTGCTCGAGCTGGTCGGATGCCTCCATGGGGCCGCCGCCGTCGC CGCGGCACTCCCGGCGCTGCAGGCTGATGTGAGAAATGAGGCTTGGATCG TTGGGGGCACTCGGAGAAGGGAAAGTAATGTTCGTTTTGAGGCATCGAGC CCAGGAGAAACGAAGAAACGGTTGCAGATTTTGTGTAACGAGCAATGTGG CTTTTGAGTAGCGTGCTTTGTTTTGGTTTCAAGTGTCATGCTCGTCATAC TCTTTTGAAGCGATCGCCGTTTTCTGATATAACAATGATATGAAAAACGG AACATCATCGGCCTGGTAGGTAAACGCGGCTACAGGGCGCAATGAAGGCG GCATGGTGGAGGCATACGACATGAAGGTGGTCCCGCGCGGCCTATACGAC GTGGTGAGCCTGCGACTTTGTGACCTTTTCTGCTGGATTGGTTGATTGTA AGAGTTGGGTTTCCGCCGGCGTGCTGATGGTGTTGGCGGCAGATTTTGTG ACGGTGGCGCCGGCAATGGCGCTGGCGATGGCGCCGATAACGGTGCTGGC AACAGCTTGGGCAGCTGCGGCTAGCGGCGTTTGTGCCGATGCCAGCAGGA ATCTTAGGAGCGGCGACGGAGCCGGCTGGCTTCCTTGCTGTCCGTCGCTA CGGTTTCTCATGCCTCTTGTCCGTCCGCGGAAAGAATGAACGGTTTGAAC TGGTGCAACGAAATCATTTTGAGGCAACCACGGAACACCCGTGCCACTCG CGCCGCCGTCTCCCCTGCCACCGCCATCCCTTGAAACGCACCGCCGCTGC ATCGTTTAGATGGCTGTTGAGGCAGCGGAGAAACGAAAGTGGTACTGCTG TGTCGTGTGGACCTCTGGCACGGTGTCCACCGAGCGTCTCGTCGCCCTCG AAGCCATGACAGATCTCAAGGTGAGTGAGGCCTTTCGAGAGAGTGCCTGA TCCGTTCGTTGTCTCTGTCGCGGTGGCGTGCAATGCTGGATTGCCGTAGG GCAAAATGCACATTTCTCTCTTCAAGCAGCTGCCGTCGCTCACAGCCGTT GCCAGCGAATGCTTATTTTGTGGTTCTGCGTGGCCTACCTGGCGCGACCG TTGTCTGACTGATTTGTTTTTTTCCTCGATGCTTCGACGCCAAACTGCAT TCCCGGCTGCGCAGGTTCAGCAGAAGACGCCAATCCGAGTTCTGCATCGC CGCACATTGTCCATTCGCGAAAAAGTGAGCCTGCGGGATTGACTTTTGTC GCTCAGAAGTCATGGTCCCTTACGAGCAGGGCAACGGCTGCATTGGAGCT ATCTTAAATAAGGCATGCCTGCAAGGCGGCTTGCAAATTCTGACTTCGCC TGAACCATGGATGCCACCGCCGCCGCCGCCGCAATCGAAACTTCGACCAA AAACCCGGACAGATGATCCACAGCATGCGGTGCGAGCGGATCAACGACCA CTTTTTCGTGCTCCGCCTGTCGACGTCAGCGGGCACGTACGTCAAGGAGT TCGTGCACGGCGACCTCGGCCGGACTGCTCCGAGCGTCGGCTCGCTGCTC GGCTGCCGCGCCGACATCCTGCAGCTTGACGTCGACAAGGTCGAGGTGAA CGCCGCTGCCGCCCCGACCGCCGATGCGGTTGCCGCGGCTACGGTCGGGG GCAGCGGCGAAGCCATCCGAACTGACGTCGGCGAAAGCTTCAGAAACGAT GGCGGCCGCGAAACTGTCGGAAATGACGGCGGCGGTGGTGGTGAAGGCGG CTGTGGCGGCGAAAGCGGAAGCTATGGTGGCAGGACGCTTGAGGGCGCCG TTGAGACTGCCGGAGAAGGAGCCGCCGTCGCGGTCGCTGCCGCCGCCGCT AACGGATAAGCATGGACAAGTGCAAATAAACGGATCATCACTGCAATACT CACCCGCCTTTCGAGAGACTGTGACTTTCAGACGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1444:965..4500+

>mRNA_P-wetherbeei_contig1444.1.1 ID=mRNA_P-wetherbeei_contig1444.1.1|Name=mRNA_P-wetherbeei_contig1444.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2157bp|location=Sequence derived from alignment at P-wetherbeei_contig1444:965..4500+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAGCCACGGCCCGCTCTGCACGGGAAGTGCTATCGTCCTCTGCCAC
CCCGTTTTTGGAAGCCGCTGCGAGAAGTGGAGCCTGCTGGCACTGCTTGC
TCCGGACATGCACTGGGTTTGAAGGACATCATGAACCCTTCGAGGCGACG
CTGGAGGAGCTACAATCAAGCCTTCGCAACGCCGGCGAAGACCTCCTGCC
GACATTTTCCGAGCTATTTGTGCCGCGACAAAAAGTGTGCACCCTGTGTT
TGGGCCTCTTCCCTGTCTGCGTCGTGGAAGACGCCGCAGGCAGTAGCAGC
AGCCAAGGAGACGGGGGACTCAAAATTGTTCGGTCCTGTACCGAGGTGGT
GCGTGCCAGCGGCCACAAAGTGTCCAGCTTCCGCCTCTCCATCTCACTGC
CATCGTCGGTGACGGTCCGCGAGGCCGCCGTGATGCATGATGAGGAGGCC
CTGCCCGGCAGCAGCCGCGGCTTGCCCGTCGACCTCAAGGGCACGCTACA
GACGGCGCTGGCGGACCGCCTCGCGACCGCCCTCGGCGTTCCCCACAACC
CGGCCAGCGACTTCTGGATCGAAGTAACCGTGCGAGACTCGGCCGGCGAT
CTGGAAGCCGCCTGCGCGCTGCAATTGGCGACAAAGGACGAAGGCAACGG
CGGCGGGTGGGGCGGCCGAGGCGGCGGCGGCGGCGGCAGCACGGGCGGGT
GGAAGCGGCAGCGGCGGCAGGCGCACCCGCCAGTCGAGGGCACCTTCCGG
CTCAGTCAGGGTGCAGCGGGGAAGGCGCTCTCAAAACCGACGGCGGAGCA
GAAGGAAGCGCTCCGCGCTTGGCACGCCGACGGTGTTCCGAGTATCGGCG
ACAGAAGCTGCGGCGGCGTCGCTGCAGGCGGGGAGCCGCCATCATTGGAA
GTGGGCGTGCGCCGCGAGAGCATCTTTATCCAGGGCCGTTATGTGAAACT
GTCAAGGGAGGTGCCGCAGAGCCCGTGGATGGTGGATGACGATGCCATCC
TCGACGCTGCTTCTTCCTCCACGGCGGGAGGGCGCGCAGGCGCTAATGGT
GAAGCCTCCACAGACGGCGGTGGTGGTGCCGGCGCCAGCAGTAACGGTCG
CGCCGACAGCAGCAGTGGCGGCGCCAGCAGCGGCAGCGTCGCCAGCAGCG
GCGATGCAGGTGCCAGTAGCAAGGGCGGTGGCGGCGGCGGCGCCGGTCTC
GATAGCACTGCGGTAAACAGCTGCGGCGGCGGCGGCGGCCGCAAGGGGCT
CTGGTCGGTCCACGAGATCGTCGGGGAACCCTTCGAGCCGCTTGTGGAGC
GCGGCGACGCCGGGCGCGTCAAGCTGCATGGCGCCGGCCGCGAGGACATT
GACGTACGGATGCTGGGGCGGGGGCGCCCGTTCGTGCTCGAGCTGGTCGG
ATGCCTCCATGGGGCCGCCGCCGTCGCCGCGGCACTCCCGGCGCTGCAGG
CTGATGTAAACGCGGCTACAGGGCGCAATGAAGGCGGCATGGTGGAGGCA
TACGACATGAAGGTGGTCCCGCGCGGCCTATACGACGTGATGGCTGTTGA
GGCAGCGGAGAAACGAAAGTGGTACTGCTGTGTCGTGTGGACCTCTGGCA
CGGTGTCCACCGAGCGTCTCGTCGCCCTCGAAGCCATGACAGATCTCAAG
GTTCAGCAGAAGACGCCAATCCGAGTTCTGCATCGCCGCACATTGTCCAT
TCGCGAAAAAATGATCCACAGCATGCGGTGCGAGCGGATCAACGACCACT
TTTTCGTGCTCCGCCTGTCGACGTCAGCGGGCACGTACGTCAAGGAGTTC
GTGCACGGCGACCTCGGCCGGACTGCTCCGAGCGTCGGCTCGCTGCTCGG
CTGCCGCGCCGACATCCTGCAGCTTGACGTCGACAAGGTCGAGGTGAACG
CCGCTGCCGCCCCGACCGCCGATGCGGTTGCCGCGGCTACGGTCGGGGGC
AGCGGCGAAGCCATCCGAACTGACGTCGGCGAAAGCTTCAGAAACGATGG
CGGCCGCGAAACTGTCGGAAATGACGGCGGCGGTGGTGGTGAAGGCGGCT
GTGGCGGCGAAAGCGGAAGCTATGGTGGCAGGACGCTTGAGGGCGCCGTT
GAGACTGCCGGAGAAGGAGCCGCCGTCGCGGTCGCTGCCGCCGCCGCTAA
CGGATAA
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