mRNA_P-wetherbeei_contig14196.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14196.2.1
Unique NamemRNA_P-wetherbeei_contig14196.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14196.2.1 vs. uniprot
Match: UPI00110DABC1 (non-heme iron oxygenase ferredoxin subunit n=1 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI00110DABC1)

HSP 1 Score: 119 bits (297), Expect = 5.860e-33
Identity = 50/87 (57.47%), Postives = 64/87 (73.56%), Query Frame = 1
Query:   13 WVAVAKVRDVEAGKMVPVEAADKQLAIYNLGGTFYATDNECTHAYAMLTDGLVDGDVVECPLHGGAFEIKTGKGLGAPIFCDLKCYP 273
            W AV    D+E G M+PVE  D Q+AIYN+GG F+ATDN C+HA+A+LTDGL++ D+VECPLHG  F++KTGK    P   DL+ YP
Sbjct:    6 WHAVCATADIETGTMMPVEIGDLQIAIYNVGGEFFATDNICSHAFALLTDGLLEDDMVECPLHGACFDVKTGKAQCEPAEIDLRVYP 92          
BLAST of mRNA_P-wetherbeei_contig14196.2.1 vs. uniprot
Match: A0A5C8C8P0_9BRAD (Non-heme iron oxygenase ferredoxin subunit n=1 Tax=Afipia sp. TaxID=1871052 RepID=A0A5C8C8P0_9BRAD)

HSP 1 Score: 117 bits (293), Expect = 2.380e-32
Identity = 46/91 (50.55%), Postives = 66/91 (72.53%), Query Frame = 1
Query:    1 MSEKWVAVAKVRDVEAGKMVPVEAADKQLAIYNLGGTFYATDNECTHAYAMLTDGLVDGDVVECPLHGGAFEIKTGKGLGAPIFCDLKCYP 273
            MSE W ++  + D++AG M+P+E  +  +A+YN+ G ++ATDN CTH +A+LTDG +DGD VEC LHGG F I+TGK L  P+  DL+ +P
Sbjct:    1 MSEVWHSICALNDIQAGTMLPIEIGEMHIAVYNVDGEYFATDNVCTHGFALLTDGFLDGDSVECALHGGCFNIRTGKALCEPVDVDLRTFP 91          
BLAST of mRNA_P-wetherbeei_contig14196.2.1 vs. uniprot
Match: A0A1M6ZVF8_9BRAD (3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunit/naphthalene 1,2-dioxygenase system ferredoxin subunit n=2 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A1M6ZVF8_9BRAD)

HSP 1 Score: 113 bits (283), Expect = 7.930e-31
Identity = 47/87 (54.02%), Postives = 63/87 (72.41%), Query Frame = 1
Query:   13 WVAVAKVRDVEAGKMVPVEAADKQLAIYNLGGTFYATDNECTHAYAMLTDGLVDGDVVECPLHGGAFEIKTGKGLGAPIFCDLKCYP 273
            W +V  + ++ AG M+ VE  D Q+AIYN+GG F+ATDN C+H YA+LTDGL++ D+VECPLHG  F++KTGK    P   DL+ YP
Sbjct:    6 WHSVCAIAEIAAGAMMAVEIGDLQIAIYNVGGEFFATDNVCSHEYALLTDGLLEDDMVECPLHGACFDVKTGKAQCEPAEIDLRVYP 92          
BLAST of mRNA_P-wetherbeei_contig14196.2.1 vs. uniprot
Match: A0A6B9FZ85_9HYPH (Non-heme iron oxygenase ferredoxin subunit n=2 Tax=Methylobacterium mesophilicum TaxID=39956 RepID=A0A6B9FZ85_9HYPH)

HSP 1 Score: 112 bits (280), Expect = 2.140e-30
Identity = 47/91 (51.65%), Postives = 63/91 (69.23%), Query Frame = 1
Query:    1 MSEKWVAVAKVRDVEAGKMVPVEAADKQLAIYNLGGTFYATDNECTHAYAMLTDGLVDGDVVECPLHGGAFEIKTGKGLGAPIFCDLKCYP 273
            M   W  +A   DV  G+ VPVE A   LA++ + G +Y TDN CTHAYA+LTDG ++G ++ECPLH G F+++TG+G GAPI  DL+ YP
Sbjct:    1 MDGNWTRIAGTGDVGEGEAVPVEVAGLSLALFRVDGAWYCTDNVCTHAYALLTDGWLEGCLIECPLHNGQFDVRTGEGQGAPIIEDLRTYP 91          
BLAST of mRNA_P-wetherbeei_contig14196.2.1 vs. uniprot
Match: K8PA81_9BRAD (Rieske domain-containing protein n=4 Tax=Bradyrhizobiaceae TaxID=41294 RepID=K8PA81_9BRAD)

HSP 1 Score: 111 bits (277), Expect = 6.490e-30
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 1
Query:    1 MSEK-WVAVAKVRDVEAGKMVPVEAADKQLAIYNLGGTFYATDNECTHAYAMLTDGLVDGDVVECPLHGGAFEIKTGKGLGAPIFCDLKCY 270
            MSE  W A+ +  D++ G M+P E  + Q+A+Y + G  +ATDN CTH  A+LTDG +D DVVECPLHGG F +KTGK L  P+ CD+K Y
Sbjct:    1 MSENGWHAICQNTDIDEGGMLPFEVGNFQVALYKVNGEIFATDNVCTHGMALLTDGFLDDDVVECPLHGGMFNVKTGKALCEPVDCDVKVY 91          
BLAST of mRNA_P-wetherbeei_contig14196.2.1 vs. uniprot
Match: A0A4U6BKB4_9BRAD (Non-heme iron oxygenase ferredoxin subunit n=1 Tax=Afipia massiliensis TaxID=211460 RepID=A0A4U6BKB4_9BRAD)

HSP 1 Score: 111 bits (277), Expect = 6.490e-30
Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = 1
Query:    7 EKWVAVAKVRDVEAGKMVPVEAADKQLAIYNLGGTFYATDNECTHAYAMLTDGLVDGDVVECPLHGGAFEIKTGKGLGAPIFCDLKCY 270
            + W A+ +  D++ G M+P E  + Q+A+Y + G  +ATDN CTH  A+LTDG +D DVVECPLHGG F +KTGK L  P+ CD+K Y
Sbjct:    4 DSWHAICQSADIDEGGMLPFEVGNFQVALYKVNGEIFATDNLCTHGMALLTDGFLDDDVVECPLHGGMFNVKTGKALCEPVDCDVKVY 91          
BLAST of mRNA_P-wetherbeei_contig14196.2.1 vs. uniprot
Match: K8NNM0_9BRAD (Rieske domain-containing protein n=2 Tax=Bradyrhizobiaceae TaxID=41294 RepID=K8NNM0_9BRAD)

HSP 1 Score: 110 bits (274), Expect = 1.860e-29
Identity = 46/90 (51.11%), Postives = 63/90 (70.00%), Query Frame = 1
Query:    1 MSEKWVAVAKVRDVEAGKMVPVEAADKQLAIYNLGGTFYATDNECTHAYAMLTDGLVDGDVVECPLHGGAFEIKTGKGLGAPIFCDLKCY 270
            MSE W +V    +V+AG M+P+E  D  +A+YN+   ++ATDN CTH +A+LTDG +DGD VEC LHGG F I+TGK L  P+  DL+ +
Sbjct:    1 MSEVWHSVCARDEVQAGAMLPIEIGDMHIAVYNVDDEYFATDNICTHGFALLTDGFLDGDSVECALHGGCFNIRTGKALCEPVDVDLRTF 90          
BLAST of mRNA_P-wetherbeei_contig14196.2.1 vs. uniprot
Match: A0A8I1UQE0_9BRAD (Non-heme iron oxygenase ferredoxin subunit n=1 Tax=Afipia sp. TaxID=1871052 RepID=A0A8I1UQE0_9BRAD)

HSP 1 Score: 109 bits (273), Expect = 2.560e-29
Identity = 48/91 (52.75%), Postives = 61/91 (67.03%), Query Frame = 1
Query:    1 MSEK-WVAVAKVRDVEAGKMVPVEAADKQLAIYNLGGTFYATDNECTHAYAMLTDGLVDGDVVECPLHGGAFEIKTGKGLGAPIFCDLKCY 270
            MSE  W A+    D+  G M+P E  + Q+A+Y +G   +ATDN CTH  A+LTDG +D DVVECPLHGG F +KTGK L  P+ CD+K Y
Sbjct:    1 MSENGWHAICHDSDLNEGAMLPFELGEFQIAVYRVGSEVFATDNVCTHGMALLTDGFLDDDVVECPLHGGMFNVKTGKALCEPVECDVKVY 91          
BLAST of mRNA_P-wetherbeei_contig14196.2.1 vs. uniprot
Match: A0A1M3QA02_9PROT ((2Fe-2S)-binding protein n=2 Tax=Rhodospirillales TaxID=204441 RepID=A0A1M3QA02_9PROT)

HSP 1 Score: 108 bits (271), Expect = 5.630e-29
Identity = 51/93 (54.84%), Postives = 66/93 (70.97%), Query Frame = 1
Query:    1 MSE--KWVAVAKVRDVEAGKMVPVEAADKQLAIYNL-GGTFYATDNECTHAYAMLTDGLVDGDVVECPLHGGAFEIKTGKGLGAPIFCDLKCY 270
            MSE   WV VA V DV  G  +PVE   +QLAIY+L GG  + TDN CTHA+A+LTDG ++G ++ECPLH G F+++TG G GAPI  DL+ +
Sbjct:    1 MSEAGNWVRVAAVADVAEGSAIPVEVGGRQLAIYHLEGGAIHCTDNICTHAFALLTDGWLEGCLIECPLHAGQFDVRTGAGQGAPIEEDLRTF 93          
BLAST of mRNA_P-wetherbeei_contig14196.2.1 vs. uniprot
Match: UPI00131BE361 (non-heme iron oxygenase ferredoxin subunit n=1 Tax=Acidisphaera sp. L21 TaxID=1641851 RepID=UPI00131BE361)

HSP 1 Score: 108 bits (270), Expect = 7.120e-29
Identity = 43/91 (47.25%), Postives = 65/91 (71.43%), Query Frame = 1
Query:    1 MSEKWVAVAKVRDVEAGKMVPVEAADKQLAIYNLGGTFYATDNECTHAYAMLTDGLVDGDVVECPLHGGAFEIKTGKGLGAPIFCDLKCYP 273
            M E W  +A V D+  G+ +PVE     LA+Y++   ++ T+N C+HAYA+LTDG ++G ++ECPLH G F+I+TGKG+G PIF D++ +P
Sbjct:    1 MDESWTRIAGVGDLADGEAIPVELMGVNLALYHVEDGWFCTENVCSHAYALLTDGWLEGHLIECPLHNGQFDIRTGKGMGPPIFEDIRTFP 91          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14196.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00110DABC15.860e-3357.47non-heme iron oxygenase ferredoxin subunit n=1 Tax... [more]
A0A5C8C8P0_9BRAD2.380e-3250.55Non-heme iron oxygenase ferredoxin subunit n=1 Tax... [more]
A0A1M6ZVF8_9BRAD7.930e-3154.023-phenylpropionate/trans-cinnamate dioxygenase fer... [more]
A0A6B9FZ85_9HYPH2.140e-3051.65Non-heme iron oxygenase ferredoxin subunit n=2 Tax... [more]
K8PA81_9BRAD6.490e-3052.75Rieske domain-containing protein n=4 Tax=Bradyrhiz... [more]
A0A4U6BKB4_9BRAD6.490e-3051.14Non-heme iron oxygenase ferredoxin subunit n=1 Tax... [more]
K8NNM0_9BRAD1.860e-2951.11Rieske domain-containing protein n=2 Tax=Bradyrhiz... [more]
A0A8I1UQE0_9BRAD2.560e-2952.75Non-heme iron oxygenase ferredoxin subunit n=1 Tax... [more]
A0A1M3QA02_9PROT5.630e-2954.84(2Fe-2S)-binding protein n=2 Tax=Rhodospirillales ... [more]
UPI00131BE3617.120e-2947.25non-heme iron oxygenase ferredoxin subunit n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14196contigP-wetherbeei_contig14196:1467..1739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1380394.JADL01000017_gene508
PFAMsRieske
Model size273
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.94e-33
EggNOG OGsCOG2146@1|root,COG2146@2|Bacteria,1N8PE@1224|Proteobacteria,2UF7G@28211|Alphaproteobacteria,2JTVD@204441|Rhodospirillales
DescriptionRieske-like [2Fe-2S] domain
Cds size273
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186012.4896498-CDS-P-wetherbeei_contig14196:1466..17391683186012.4896498-CDS-P-wetherbeei_contig14196:1466..1739Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14196 1467..1739 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14196.2.1prot_P-wetherbeei_contig14196.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14196 1467..1739 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14196.2.1

>prot_P-wetherbeei_contig14196.2.1 ID=prot_P-wetherbeei_contig14196.2.1|Name=mRNA_P-wetherbeei_contig14196.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp
MSEKWVAVAKVRDVEAGKMVPVEAADKQLAIYNLGGTFYATDNECTHAYA
MLTDGLVDGDVVECPLHGGAFEIKTGKGLGAPIFCDLKCYP
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mRNA from alignment at P-wetherbeei_contig14196:1467..1739+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14196.2.1 ID=mRNA_P-wetherbeei_contig14196.2.1|Name=mRNA_P-wetherbeei_contig14196.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig14196:1467..1739+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGAGAAATGGGTGGCGGTGGCGAAGGTCCGTGATGTCGAGGCGGG CAAGATGGTTCCGGTCGAGGCGGCGGACAAGCAGTTGGCGATCTACAATC TCGGCGGTACGTTCTACGCTACCGACAACGAGTGCACGCACGCTTATGCG ATGCTGACCGACGGCTTGGTCGATGGCGACGTGGTCGAATGCCCGCTGCA CGGCGGCGCGTTCGAGATCAAAACCGGCAAGGGACTGGGCGCGCCGATCT TTTGCGATCTCAAATGCTATCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14196:1467..1739+

>mRNA_P-wetherbeei_contig14196.2.1 ID=mRNA_P-wetherbeei_contig14196.2.1|Name=mRNA_P-wetherbeei_contig14196.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig14196:1467..1739+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGAGAAATGGGTGGCGGTGGCGAAGGTCCGTGATGTCGAGGCGGG
CAAGATGGTTCCGGTCGAGGCGGCGGACAAGCAGTTGGCGATCTACAATC
TCGGCGGTACGTTCTACGCTACCGACAACGAGTGCACGCACGCTTATGCG
ATGCTGACCGACGGCTTGGTCGATGGCGACGTGGTCGAATGCCCGCTGCA
CGGCGGCGCGTTCGAGATCAAAACCGGCAAGGGACTGGGCGCGCCGATCT
TTTGCGATCTCAAATGCTATCCC
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