mRNA_P-wetherbeei_contig14196.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig14196.2.1 vs. uniprot
Match: UPI00110DABC1 (non-heme iron oxygenase ferredoxin subunit n=1 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI00110DABC1) HSP 1 Score: 119 bits (297), Expect = 5.860e-33 Identity = 50/87 (57.47%), Postives = 64/87 (73.56%), Query Frame = 1
Query: 13 WVAVAKVRDVEAGKMVPVEAADKQLAIYNLGGTFYATDNECTHAYAMLTDGLVDGDVVECPLHGGAFEIKTGKGLGAPIFCDLKCYP 273
W AV D+E G M+PVE D Q+AIYN+GG F+ATDN C+HA+A+LTDGL++ D+VECPLHG F++KTGK P DL+ YP
Sbjct: 6 WHAVCATADIETGTMMPVEIGDLQIAIYNVGGEFFATDNICSHAFALLTDGLLEDDMVECPLHGACFDVKTGKAQCEPAEIDLRVYP 92
BLAST of mRNA_P-wetherbeei_contig14196.2.1 vs. uniprot
Match: A0A5C8C8P0_9BRAD (Non-heme iron oxygenase ferredoxin subunit n=1 Tax=Afipia sp. TaxID=1871052 RepID=A0A5C8C8P0_9BRAD) HSP 1 Score: 117 bits (293), Expect = 2.380e-32 Identity = 46/91 (50.55%), Postives = 66/91 (72.53%), Query Frame = 1
Query: 1 MSEKWVAVAKVRDVEAGKMVPVEAADKQLAIYNLGGTFYATDNECTHAYAMLTDGLVDGDVVECPLHGGAFEIKTGKGLGAPIFCDLKCYP 273
MSE W ++ + D++AG M+P+E + +A+YN+ G ++ATDN CTH +A+LTDG +DGD VEC LHGG F I+TGK L P+ DL+ +P
Sbjct: 1 MSEVWHSICALNDIQAGTMLPIEIGEMHIAVYNVDGEYFATDNVCTHGFALLTDGFLDGDSVECALHGGCFNIRTGKALCEPVDVDLRTFP 91
BLAST of mRNA_P-wetherbeei_contig14196.2.1 vs. uniprot
Match: A0A1M6ZVF8_9BRAD (3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunit/naphthalene 1,2-dioxygenase system ferredoxin subunit n=2 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A1M6ZVF8_9BRAD) HSP 1 Score: 113 bits (283), Expect = 7.930e-31 Identity = 47/87 (54.02%), Postives = 63/87 (72.41%), Query Frame = 1
Query: 13 WVAVAKVRDVEAGKMVPVEAADKQLAIYNLGGTFYATDNECTHAYAMLTDGLVDGDVVECPLHGGAFEIKTGKGLGAPIFCDLKCYP 273
W +V + ++ AG M+ VE D Q+AIYN+GG F+ATDN C+H YA+LTDGL++ D+VECPLHG F++KTGK P DL+ YP
Sbjct: 6 WHSVCAIAEIAAGAMMAVEIGDLQIAIYNVGGEFFATDNVCSHEYALLTDGLLEDDMVECPLHGACFDVKTGKAQCEPAEIDLRVYP 92
BLAST of mRNA_P-wetherbeei_contig14196.2.1 vs. uniprot
Match: A0A6B9FZ85_9HYPH (Non-heme iron oxygenase ferredoxin subunit n=2 Tax=Methylobacterium mesophilicum TaxID=39956 RepID=A0A6B9FZ85_9HYPH) HSP 1 Score: 112 bits (280), Expect = 2.140e-30 Identity = 47/91 (51.65%), Postives = 63/91 (69.23%), Query Frame = 1
Query: 1 MSEKWVAVAKVRDVEAGKMVPVEAADKQLAIYNLGGTFYATDNECTHAYAMLTDGLVDGDVVECPLHGGAFEIKTGKGLGAPIFCDLKCYP 273
M W +A DV G+ VPVE A LA++ + G +Y TDN CTHAYA+LTDG ++G ++ECPLH G F+++TG+G GAPI DL+ YP
Sbjct: 1 MDGNWTRIAGTGDVGEGEAVPVEVAGLSLALFRVDGAWYCTDNVCTHAYALLTDGWLEGCLIECPLHNGQFDVRTGEGQGAPIIEDLRTYP 91
BLAST of mRNA_P-wetherbeei_contig14196.2.1 vs. uniprot
Match: K8PA81_9BRAD (Rieske domain-containing protein n=4 Tax=Bradyrhizobiaceae TaxID=41294 RepID=K8PA81_9BRAD) HSP 1 Score: 111 bits (277), Expect = 6.490e-30 Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 1
Query: 1 MSEK-WVAVAKVRDVEAGKMVPVEAADKQLAIYNLGGTFYATDNECTHAYAMLTDGLVDGDVVECPLHGGAFEIKTGKGLGAPIFCDLKCY 270
MSE W A+ + D++ G M+P E + Q+A+Y + G +ATDN CTH A+LTDG +D DVVECPLHGG F +KTGK L P+ CD+K Y
Sbjct: 1 MSENGWHAICQNTDIDEGGMLPFEVGNFQVALYKVNGEIFATDNVCTHGMALLTDGFLDDDVVECPLHGGMFNVKTGKALCEPVDCDVKVY 91
BLAST of mRNA_P-wetherbeei_contig14196.2.1 vs. uniprot
Match: A0A4U6BKB4_9BRAD (Non-heme iron oxygenase ferredoxin subunit n=1 Tax=Afipia massiliensis TaxID=211460 RepID=A0A4U6BKB4_9BRAD) HSP 1 Score: 111 bits (277), Expect = 6.490e-30 Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = 1
Query: 7 EKWVAVAKVRDVEAGKMVPVEAADKQLAIYNLGGTFYATDNECTHAYAMLTDGLVDGDVVECPLHGGAFEIKTGKGLGAPIFCDLKCY 270
+ W A+ + D++ G M+P E + Q+A+Y + G +ATDN CTH A+LTDG +D DVVECPLHGG F +KTGK L P+ CD+K Y
Sbjct: 4 DSWHAICQSADIDEGGMLPFEVGNFQVALYKVNGEIFATDNLCTHGMALLTDGFLDDDVVECPLHGGMFNVKTGKALCEPVDCDVKVY 91
BLAST of mRNA_P-wetherbeei_contig14196.2.1 vs. uniprot
Match: K8NNM0_9BRAD (Rieske domain-containing protein n=2 Tax=Bradyrhizobiaceae TaxID=41294 RepID=K8NNM0_9BRAD) HSP 1 Score: 110 bits (274), Expect = 1.860e-29 Identity = 46/90 (51.11%), Postives = 63/90 (70.00%), Query Frame = 1
Query: 1 MSEKWVAVAKVRDVEAGKMVPVEAADKQLAIYNLGGTFYATDNECTHAYAMLTDGLVDGDVVECPLHGGAFEIKTGKGLGAPIFCDLKCY 270
MSE W +V +V+AG M+P+E D +A+YN+ ++ATDN CTH +A+LTDG +DGD VEC LHGG F I+TGK L P+ DL+ +
Sbjct: 1 MSEVWHSVCARDEVQAGAMLPIEIGDMHIAVYNVDDEYFATDNICTHGFALLTDGFLDGDSVECALHGGCFNIRTGKALCEPVDVDLRTF 90
BLAST of mRNA_P-wetherbeei_contig14196.2.1 vs. uniprot
Match: A0A8I1UQE0_9BRAD (Non-heme iron oxygenase ferredoxin subunit n=1 Tax=Afipia sp. TaxID=1871052 RepID=A0A8I1UQE0_9BRAD) HSP 1 Score: 109 bits (273), Expect = 2.560e-29 Identity = 48/91 (52.75%), Postives = 61/91 (67.03%), Query Frame = 1
Query: 1 MSEK-WVAVAKVRDVEAGKMVPVEAADKQLAIYNLGGTFYATDNECTHAYAMLTDGLVDGDVVECPLHGGAFEIKTGKGLGAPIFCDLKCY 270
MSE W A+ D+ G M+P E + Q+A+Y +G +ATDN CTH A+LTDG +D DVVECPLHGG F +KTGK L P+ CD+K Y
Sbjct: 1 MSENGWHAICHDSDLNEGAMLPFELGEFQIAVYRVGSEVFATDNVCTHGMALLTDGFLDDDVVECPLHGGMFNVKTGKALCEPVECDVKVY 91
BLAST of mRNA_P-wetherbeei_contig14196.2.1 vs. uniprot
Match: A0A1M3QA02_9PROT ((2Fe-2S)-binding protein n=2 Tax=Rhodospirillales TaxID=204441 RepID=A0A1M3QA02_9PROT) HSP 1 Score: 108 bits (271), Expect = 5.630e-29 Identity = 51/93 (54.84%), Postives = 66/93 (70.97%), Query Frame = 1
Query: 1 MSE--KWVAVAKVRDVEAGKMVPVEAADKQLAIYNL-GGTFYATDNECTHAYAMLTDGLVDGDVVECPLHGGAFEIKTGKGLGAPIFCDLKCY 270
MSE WV VA V DV G +PVE +QLAIY+L GG + TDN CTHA+A+LTDG ++G ++ECPLH G F+++TG G GAPI DL+ +
Sbjct: 1 MSEAGNWVRVAAVADVAEGSAIPVEVGGRQLAIYHLEGGAIHCTDNICTHAFALLTDGWLEGCLIECPLHAGQFDVRTGAGQGAPIEEDLRTF 93
BLAST of mRNA_P-wetherbeei_contig14196.2.1 vs. uniprot
Match: UPI00131BE361 (non-heme iron oxygenase ferredoxin subunit n=1 Tax=Acidisphaera sp. L21 TaxID=1641851 RepID=UPI00131BE361) HSP 1 Score: 108 bits (270), Expect = 7.120e-29 Identity = 43/91 (47.25%), Postives = 65/91 (71.43%), Query Frame = 1
Query: 1 MSEKWVAVAKVRDVEAGKMVPVEAADKQLAIYNLGGTFYATDNECTHAYAMLTDGLVDGDVVECPLHGGAFEIKTGKGLGAPIFCDLKCYP 273
M E W +A V D+ G+ +PVE LA+Y++ ++ T+N C+HAYA+LTDG ++G ++ECPLH G F+I+TGKG+G PIF D++ +P
Sbjct: 1 MDESWTRIAGVGDLADGEAIPVELMGVNLALYHVEDGWFCTENVCSHAYALLTDGWLEGHLIECPLHNGQFDIRTGKGMGPPIFEDIRTFP 91 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14196.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig14196.2.1 >prot_P-wetherbeei_contig14196.2.1 ID=prot_P-wetherbeei_contig14196.2.1|Name=mRNA_P-wetherbeei_contig14196.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp MSEKWVAVAKVRDVEAGKMVPVEAADKQLAIYNLGGTFYATDNECTHAYAback to top mRNA from alignment at P-wetherbeei_contig14196:1467..1739+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig14196.2.1 ID=mRNA_P-wetherbeei_contig14196.2.1|Name=mRNA_P-wetherbeei_contig14196.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig14196:1467..1739+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig14196:1467..1739+ >mRNA_P-wetherbeei_contig14196.2.1 ID=mRNA_P-wetherbeei_contig14196.2.1|Name=mRNA_P-wetherbeei_contig14196.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig14196:1467..1739+ (Phaeothamnion wetherbeei SAG_119_79)back to top |