mRNA_P-wetherbeei_contig14057.1.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14057.1.3
Unique NamemRNA_P-wetherbeei_contig14057.1.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14057.1.3 vs. uniprot
Match: Q6K8S4_ORYSJ (Protein FAR1-RELATED SEQUENCE n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q6K8S4_ORYSJ)

HSP 1 Score: 102 bits (255), Expect = 7.540e-23
Identity = 50/132 (37.88%), Postives = 75/132 (56.82%), Query Frame = 1
Query:    1 YIEYDVDSERRVTRLFWSYAEQQADGARFTDVIIQDNTFGTNRYGLPLCVFIGEDSNFKTIVLAQALVHKEDTAAFTWAYEHFRDSCCVKGAPPVMFLTDNNKAAASAIKAVVSDSEHFLCMWHMWRNIEKH 396
            + EY+ D   R+ RLFWS  + + D   F DV++ D+T+  NRY LP   F+G + +  TI+   A+V  E  A + W  + F D  C+    P   +TD + A   AI AV+ DSEH+LC WH+ +N+ +H
Sbjct:  253 FFEYETDEAGRLKRLFWSDPQSRIDYDAFGDVVVFDSTYRVNRYNLPFIPFVGVNHHGSTIIFGCAIVADEKVATYEWILKQFLD--CMYQKHPRALITDGDNAMRRAIAAVMPDSEHWLCTWHIEQNMARH 382          
BLAST of mRNA_P-wetherbeei_contig14057.1.3 vs. uniprot
Match: A0A0P0VHJ2_ORYSJ (Protein FAR1-RELATED SEQUENCE n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=A0A0P0VHJ2_ORYSJ)

HSP 1 Score: 100 bits (250), Expect = 3.560e-22
Identity = 49/132 (37.12%), Postives = 75/132 (56.82%), Query Frame = 1
Query:    1 YIEYDVDSERRVTRLFWSYAEQQADGARFTDVIIQDNTFGTNRYGLPLCVFIGEDSNFKTIVLAQALVHKEDTAAFTWAYEHFRDSCCVKGAPPVMFLTDNNKAAASAIKAVVSDSEHFLCMWHMWRNIEKH 396
            + EY+ D   R+ RLFWS  + + D   F DV++ D+T+  NRY LP  +F+G + +  T++   A+V  E  A + W  + F D  C+    P   +TD + A   AI AV+ DSEH LC WH+ +N+ +H
Sbjct:  216 FFEYETDEAGRLKRLFWSDPQSRIDYDAFGDVVVFDSTYRVNRYNLPFILFVGVNHHGSTVIFGCAIVADEKVATYEWILKQFLD--CMYQKHPRGLITDGDNAMHRAIAAVMPDSEHRLCTWHIEQNMARH 345          
BLAST of mRNA_P-wetherbeei_contig14057.1.3 vs. uniprot
Match: UPI00098ADE8C (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI00098ADE8C)

HSP 1 Score: 97.4 bits (241), Expect = 3.790e-21
Identity = 49/132 (37.12%), Postives = 76/132 (57.58%), Query Frame = 1
Query:    1 YIEYDVDSERRVTRLFWSYAEQQADGARFTDVIIQDNTFGTNRYGLPLCVFIGEDSNFKTIVLAQALVHKEDTAAFTWAYEHFRDSCCVKGAPPVMFLTDNNKAAASAIKAVVSDSEHFLCMWHMWRNIEKH 396
            + E+ VD+E R+  LFW  ++ + D   + DV++ DNT+  NRYG+P   F+G +++  T V A A+V  E  A + W    F  + C K   P   +TD + A   AI+ V+SD  H LC WH+ +N++KH
Sbjct:  256 FFEHTVDAEGRLQNLFWCDSQSRRDYLDYGDVVVFDNTYKMNRYGMPFIPFVGLNNHRCTTVFACAIVSDETEATYVWLLNTFLKANCQKR--PKSVITDGDAAMIRAIRKVLSDVWHRLCSWHIEKNMQKH 385          
BLAST of mRNA_P-wetherbeei_contig14057.1.3 vs. uniprot
Match: A0A6P6UIU0_COFAR (Protein FAR1-RELATED SEQUENCE n=3 Tax=Coffea TaxID=13442 RepID=A0A6P6UIU0_COFAR)

HSP 1 Score: 96.3 bits (238), Expect = 1.460e-20
Identity = 47/132 (35.61%), Postives = 76/132 (57.58%), Query Frame = 1
Query:    1 YIEYDVDSERRVTRLFWSYAEQQADGARFTDVIIQDNTFGTNRYGLPLCVFIGEDSNFKTIVLAQALVHKEDTAAFTWAYEHFRDSCCVKGAPPVMFLTDNNKAAASAIKAVVSDSEHFLCMWHMWRNIEKH 396
            Y  + VDSE R++RLFWS +  + D   F DV++ D+T+ TN+Y  PL V  G +++F T + A + V +ED  A+ W    F ++  + G  P+  +TD       AIK  + +++H LC WH+ +N+  H
Sbjct:  259 YFNFTVDSEGRLSRLFWSDSRSREDYRCFGDVLVFDSTYNTNKYLHPLVVMCGINNHFSTSIFACSTVREEDEGAYEWVLNTFLEA--MDGKKPISVVTDGAPQMRKAIKKCLPNTKHRLCCWHLNQNLNSH 388          
BLAST of mRNA_P-wetherbeei_contig14057.1.3 vs. uniprot
Match: UPI000989C371 (protein FAR1-RELATED SEQUENCE 5-like n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI000989C371)

HSP 1 Score: 93.2 bits (230), Expect = 2.320e-20
Identity = 42/132 (31.82%), Postives = 74/132 (56.06%), Query Frame = 1
Query:    1 YIEYDVDSERRVTRLFWSYAEQQADGARFTDVIIQDNTFGTNRYGLPLCVFIGEDSNFKTIVLAQALVHKEDTAAFTWAYEHFRDSCCVKGAPPVMFLTDNNKAAASAIKAVVSDSEHFLCMWHMWRNIEKH 396
            + +YDVD++ RV  +FW+ A  +     F D +  D T+ TN++ +PL VF+G + + ++ + A ALV  E   +F W ++ F    C+   PP+  LTD   +  +A+K ++  + H LC WH+ +  + H
Sbjct:   56 FYDYDVDADNRVRNVFWANASCKGSYEDFGDCVTFDTTYKTNKFHMPLGVFVGVNHHLQSTIFAVALVRDETIPSFEWVFKTFLR--CMNNKPPICMLTDQCSSMKAALKTILPHTLHTLCRWHIMKKYKDH 185          
BLAST of mRNA_P-wetherbeei_contig14057.1.3 vs. uniprot
Match: UPI001C15862E (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C15862E)

HSP 1 Score: 93.6 bits (231), Expect = 7.400e-20
Identity = 46/131 (35.11%), Postives = 79/131 (60.31%), Query Frame = 1
Query:    1 YIEYDVDSERRVTRLFWSYAEQQADGARFTDVIIQDNTFGTNRYGLPLCVFIGEDSNFKTIVLAQALVHKEDTAAFTWAYEHFRDSCCVKGAPPVMFLTDNNKAAASAIKAVVSDSEHFLCMWHMWRNIEK 393
            +IE+ +D E R++RLFW    Q A    + DVI+ DNT  TNRY +PL +F+  D+N ++ ++AQALV  E T ++ W  E  + +  ++   P++F+TD + A  +AI+ +   +    C++H+  N+ K
Sbjct:  208 FIEFQLDQENRLSRLFWMSPTQIALWLEYHDVILNDNTMKTNRYNMPLSLFLAIDNNIRSCLIAQALVSDEITESYKWILECTKKATMIE---PLVFVTDTDHAMDAAIEQIYETAYPIHCIFHISENLPK 335          
BLAST of mRNA_P-wetherbeei_contig14057.1.3 vs. uniprot
Match: UPI001ABD2DF0 (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI001ABD2DF0)

HSP 1 Score: 93.6 bits (231), Expect = 1.280e-19
Identity = 43/132 (32.58%), Postives = 73/132 (55.30%), Query Frame = 1
Query:    1 YIEYDVDSERRVTRLFWSYAEQQADGARFTDVIIQDNTFGTNRYGLPLCVFIGEDSNFKTIVLAQALVHKEDTAAFTWAYEHFRDSCCVKGAPPVMFLTDNNKAAASAIKAVVSDSEHFLCMWHMWRNIEKH 396
            + +YDVD++ RV  +FW+ A  +     F D +  D T+ TN++ +PL VF+G + + ++ + A ALV  E    F W ++ F    C+   PP+  LTD   +  +A+K ++  + H LC WH+ R  + H
Sbjct:  300 FYDYDVDADNRVRNVFWANASCKGSYEDFGDCVTFDTTYKTNKFHMPLGVFVGVNHHLQSTIFAVALVRDETIPLFEWVFKTFLR--CMNNKPPIFILTDQCSSMKAALKTILPHTLHKLCRWHIMRKYKDH 429          
BLAST of mRNA_P-wetherbeei_contig14057.1.3 vs. uniprot
Match: UPI000E6FEA5A (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6FEA5A)

HSP 1 Score: 93.2 bits (230), Expect = 1.550e-19
Identity = 45/130 (34.62%), Postives = 73/130 (56.15%), Query Frame = 1
Query:    7 EYDVDSERRVTRLFWSYAEQQADGARFTDVIIQDNTFGTNRYGLPLCVFIGEDSNFKTIVLAQALVHKEDTAAFTWAYEHFRDSCCVKGAPPVMFLTDNNKAAASAIKAVVSDSEHFLCMWHMWRNIEKH 396
            E  V ++ R   LFW+ A  + D   F DV+  D TF TN+YG+P   F+G + +  +++   AL+  E   +F WA++ F  +  + G  P    TD  +A  +AIK V+ D+ H LC++H+++N  KH
Sbjct:   50 EVQVGADNRACNLFWADARSKIDYGFFGDVVCFDTTFRTNKYGMPCAPFVGVNHHGMSVLFGMALLVDESAESFVWAFQSFLSA--MSGKHPKTIFTDQAQAIGNAIKEVMPDTHHRLCIFHIYQNAAKH 177          
BLAST of mRNA_P-wetherbeei_contig14057.1.3 vs. uniprot
Match: UPI000D62A7BC (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Citrus sinensis TaxID=2711 RepID=UPI000D62A7BC)

HSP 1 Score: 92.8 bits (229), Expect = 2.350e-19
Identity = 42/130 (32.31%), Postives = 74/130 (56.92%), Query Frame = 1
Query:    1 YIEYDVDSERRVTRLFWSYAEQQADGARFTDVIIQDNTFGTNRYGLPLCVFIGEDSNFKTIVLAQALVHKEDTAAFTWAYEHFRDSCCVKGAPPVMFLTDNNKAAASAIKAVVSDSEHFLCMWHMWRNIE 390
            + +Y +D E R+  LFW+ +  + D + F DV+  D+T+ TN YG PL + +G ++++ T     A++  E    +TW  + F   C +    P+  +TD ++A   AIK VV ++ H LC+W++ RN +
Sbjct:  219 FCKYSIDEENRLANLFWADSIARLDYSYFGDVLAFDSTYKTNEYGKPLVILLGVNNHYATSYFGCAILTDETVETYTWVLKTFL--CAMNNRKPISIVTDGDRAMRKAIKKVVPEARHRLCIWNLQRNAQ 346          
BLAST of mRNA_P-wetherbeei_contig14057.1.3 vs. uniprot
Match: UPI000B8B2115 (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8B2115)

HSP 1 Score: 92.4 bits (228), Expect = 3.240e-19
Identity = 46/132 (34.85%), Postives = 71/132 (53.79%), Query Frame = 1
Query:    1 YIEYDVDSERRVTRLFWSYAEQQADGARFTDVIIQDNTFGTNRYGLPLCVFIGEDSNFKTIVLAQALVHKEDTAAFTWAYEHFRDSCCVKGAPPVMFLTDNNKAAASAIKAVVSDSEHFLCMWHMWRNIEKH 396
            ++EY  D   R+ +LFW   + + D   F  V+  D T+  N Y  P  V +G + N KT+V   AL+  E T +F W       +   +G  P+  +TD ++A A AIK V+ ++ H LC+WH+ RNI+ H
Sbjct:  250 FVEYTQDEHERLDKLFWCDGQSRNDYKAFGHVLAFDTTYKCNAYRKPFVVLVGVNHNRKTVVFGCALIVDEKTESFVWVLNQMIKAG--EGFKPLTVITDGDRAMACAIKEVLPEARHRLCLWHLMRNIQGH 379          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14057.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q6K8S4_ORYSJ7.540e-2337.88Protein FAR1-RELATED SEQUENCE n=1 Tax=Oryza sativa... [more]
A0A0P0VHJ2_ORYSJ3.560e-2237.12Protein FAR1-RELATED SEQUENCE n=1 Tax=Oryza sativa... [more]
UPI00098ADE8C3.790e-2137.12protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Aegil... [more]
A0A6P6UIU0_COFAR1.460e-2035.61Protein FAR1-RELATED SEQUENCE n=3 Tax=Coffea TaxID... [more]
UPI000989C3712.320e-2031.82protein FAR1-RELATED SEQUENCE 5-like n=2 Tax=Aegil... [more]
UPI001C15862E7.400e-2035.11Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]
UPI001ABD2DF01.280e-1932.58protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Aegil... [more]
UPI000E6FEA5A1.550e-1934.62protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Papav... [more]
UPI000D62A7BC2.350e-1932.31protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Citru... [more]
UPI000B8B21153.240e-1934.85protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Spina... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14057contigP-wetherbeei_contig14057:62..656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog218851.Aquca_028_00159.1
PFAMsFAR1,MULE,SWIM
Model size396
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.55e-22
EggNOG OGs2CMBY@1|root,2QPXR@2759|Eukaryota,389NQ@33090|Viridiplantae,3GYUD@35493|Streptophyta
DescriptionFAR1 DNA-binding domain
Cds size396
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186007.2202904-CDS-P-wetherbeei_contig14057:61..2371683186007.2202904-CDS-P-wetherbeei_contig14057:61..237Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14057 62..237 +
1683186007.22879-CDS-P-wetherbeei_contig14057:436..6561683186007.22879-CDS-P-wetherbeei_contig14057:436..656Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14057 437..656 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14057.1.3prot_P-wetherbeei_contig14057.1.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14057 62..656 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14057.1.3

>prot_P-wetherbeei_contig14057.1.3 ID=prot_P-wetherbeei_contig14057.1.3|Name=mRNA_P-wetherbeei_contig14057.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=132bp
YIEYDVDSERRVTRLFWSYAEQQADGARFTDVIIQDNTFGTNRYGLPLCV
FIGEDSNFKTIVLAQALVHKEDTAAFTWAYEHFRDSCCVKGAPPVMFLTD
NNKAAASAIKAVVSDSEHFLCMWHMWRNIEKH
back to top

mRNA from alignment at P-wetherbeei_contig14057:62..656+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14057.1.3 ID=mRNA_P-wetherbeei_contig14057.1.3|Name=mRNA_P-wetherbeei_contig14057.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=595bp|location=Sequence derived from alignment at P-wetherbeei_contig14057:62..656+ (Phaeothamnion wetherbeei SAG_119_79)
TACATTGAGTATGATGTCGACTCGGAGCGGCGCGTGACGAGGCTCTTTTG GTCATACGCGGAGCAGCAGGCCGATGGGGCGCGCTTTACAGACGTCATCA TCCAGGACAACACCTTCGGCACCAACAGATACGGTCTCCCGCTCTGCGTC TTCATCGGCGAAGACAGCAACTTCAAGTGAGAAACGAATATCCTGAGTCA GCTGCTCTGGCTTCACAAGTAAAAAGCCGCGAGGTCTTTTCCCTCCTTCC TTTCTGTTTTTTTCTGAAAATACAGAAAACTTCGCGCGCAATCCCTATTC CTCGATCTGAGCGCCCATTTTTCCGTGTTCCCGAAATAATGCAGCCAGCG CTTCCCATGAATGCAACCAGCGCAGGACGATCGTCCTGGCGCAGGCTCTC GTCCACAAGGAGGACACGGCAGCATTTACCTGGGCGTACGAGCATTTCCG GGACAGCTGCTGTGTCAAGGGAGCGCCGCCGGTTATGTTCCTGACAGACA ACAATAAGGCGGCGGCCAGCGCCATCAAGGCGGTTGTCTCAGACAGCGAG CATTTCCTGTGCATGTGGCACATGTGGAGGAACATCGAGAAGCAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig14057:62..656+

>mRNA_P-wetherbeei_contig14057.1.3 ID=mRNA_P-wetherbeei_contig14057.1.3|Name=mRNA_P-wetherbeei_contig14057.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig14057:62..656+ (Phaeothamnion wetherbeei SAG_119_79)
TACATTGAGTATGATGTCGACTCGGAGCGGCGCGTGACGAGGCTCTTTTG
GTCATACGCGGAGCAGCAGGCCGATGGGGCGCGCTTTACAGACGTCATCA
TCCAGGACAACACCTTCGGCACCAACAGATACGGTCTCCCGCTCTGCGTC
TTCATCGGCGAAGACAGCAACTTCAAGACGATCGTCCTGGCGCAGGCTCT
CGTCCACAAGGAGGACACGGCAGCATTTACCTGGGCGTACGAGCATTTCC
GGGACAGCTGCTGTGTCAAGGGAGCGCCGCCGGTTATGTTCCTGACAGAC
AACAATAAGGCGGCGGCCAGCGCCATCAAGGCGGTTGTCTCAGACAGCGA
GCATTTCCTGTGCATGTGGCACATGTGGAGGAACATCGAGAAGCAC
back to top