mRNA_P-wetherbeei_contig14044.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14044.1.1
Unique NamemRNA_P-wetherbeei_contig14044.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14044.1.1 vs. uniprot
Match: A0A813A6K2_SYMMI (OXA1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A813A6K2_SYMMI)

HSP 1 Score: 119 bits (298), Expect = 1.170e-31
Identity = 61/126 (48.41%), Postives = 86/126 (68.25%), Query Frame = 1
Query:   16 SLIFSQLPVFASFFFGLQKMGEFVPAFSHGGALWFPDLAAADPTGTLPVLTGVTFLIMAEVSADASVT-GGAWARLMLRVLSIAMVPLTYQTASGVFLYWLTSNACSIVQALVMKRPAVRAALDIP 390
            +L F QLP+F S FFG+++MG + P FS GG  WF DLAAADP   LP++  ++FL+M E+++D   T      ++++R LS+A+VPLTY   SGVF+YW T+N  S+VQ  V+K  AV +  DIP
Sbjct:    3 ALPFIQLPIFVSLFFGIKQMGTYCPGFSSGGTAWFTDLAAADPYMVLPIINALSFLLMFEMNSDGFQTQDNDTFKMVMRGLSVAIVPLTYAMPSGVFVYWCTNNMLSMVQGKVLKTDAVASYFDIP 128          
BLAST of mRNA_P-wetherbeei_contig14044.1.1 vs. uniprot
Match: A0A7S3XMS5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMS5_HETAK)

HSP 1 Score: 113 bits (283), Expect = 5.150e-27
Identity = 63/130 (48.46%), Postives = 81/130 (62.31%), Query Frame = 1
Query:   28 SQLPVFASFFFGLQKMGEFVPAFSHGGALWFPDLAAADPTGTLPVLTGVTFLIMAEVSADASVTG--GAWARLMLRVLSIAMVPLTYQTASGVFLYWLTSNACSIVQALVMKRPAVRAALDIPIVPERLK 411
            +QLP+F S FFGL+KMGE+V   S GGA WF DLA AD T  LP     +FL M E+ AD    G   A  + ++RV+ +AM+PLT      V LYW TSNA ++ QAL ++ P  +AAL IP VP  L+
Sbjct:  200 TQLPIFMSAFFGLRKMGEYVDI-SQGGAYWFTDLAVADATYILPAACSASFLAMVELGADGMNQGPNAATMKTVMRVMGVAMLPLTVNIPQSVLLYWCTSNAYAMAQALALRAPGAKAALGIPEVPPHLR 328          
BLAST of mRNA_P-wetherbeei_contig14044.1.1 vs. uniprot
Match: A0A7S3XPC4_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPC4_HETAK)

HSP 1 Score: 110 bits (274), Expect = 1.200e-25
Identity = 59/132 (44.70%), Postives = 85/132 (64.39%), Query Frame = 1
Query:   25 FSQLPVFASFFFGLQKMGEFVPAFSHGGALWFPDLAAADPTGTLPVLTGVTFLIMAEVSADASVTGGAWARLM---LRVLSIAMVPLTYQTASGVFLYWLTSNACSIVQALVMKRPAVRAALDIPIVPERLK 411
            F QLP+F S FFGL++MG   P  + GG     DL AADPT  LPV+TG  FL M E+   A +      R +   +R +++A   +TYQ  +GVF+YW+TSNA +++Q++ +K P ++AALDIP +PE +K
Sbjct:  252 FLQLPLFVSVFFGLKEMGTHFPGLATGGLGPVLDLTAADPTFVLPVVTGALFLGMVELGGGADMPQTPTTRQLKWFMRAMAVATPVMTYQFPAGVFVYWMTSNAFTLMQSVALKNPTIKAALDIPEIPESIK 383          
BLAST of mRNA_P-wetherbeei_contig14044.1.1 vs. uniprot
Match: A0A1Y1Y304_9FUNG (Uncharacterized protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y304_9FUNG)

HSP 1 Score: 105 bits (263), Expect = 2.760e-24
Identity = 58/135 (42.96%), Postives = 83/135 (61.48%), Query Frame = 1
Query:    7 RRCSLIFSQLPVFASFFFGLQKMGEF-VPAFSHGGALWFPDLAAADPTGTLPVLTGVTFLIMAEVSADASVTGGAWARL--MLRVLSIAMVPLTYQTASGVFLYWLTSNACSIVQALVMKRPAVRAALDIPIVPE 402
            +  +L   Q PV  SFFF L+ M +  VP F  GG  WF DL AADP   LPV++G+ FL + E+ ++A    G    +    R +++AMVP+T   AS +F+YW+TSNA SI Q L +K PA+R ++ IP++ E
Sbjct:  240 KMLALPLMQAPVMLSFFFALRDMAQLPVPQFQTGGTAWFTDLTAADPLYILPVVSGLGFLAILELGSEAGTNVGQTKNVKWFFRFMAVAMVPVTANFASSIFVYWVTSNAFSIGQVLTLKNPAIRKSMGIPLLME 374          
BLAST of mRNA_P-wetherbeei_contig14044.1.1 vs. uniprot
Match: A0A1Y1ICP8_KLENI (Cytochrome oxidase biogenesis protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1ICP8_KLENI)

HSP 1 Score: 105 bits (263), Expect = 2.820e-24
Identity = 56/129 (43.41%), Postives = 78/129 (60.47%), Query Frame = 1
Query:   25 FSQLPVFASFFFGLQKMGEFVPAFSHGGALWFPDLAAADPTGTLPVLTGVTFLIMAEVSADASVTGGAWARLM---LRVLSIAMVPLTYQTASGVFLYWLTSNACSIVQALVMKRPAVRAALDIPIVPE 402
            F+Q P+F  FF  +++M E +P+F  GG  WF DL+ ADPT  LP +   TFLI  EV A   + G   A+ M   +RVL +AMVPLT      +F YW+ SN  S++Q+ ++K P V+ AL IP + E
Sbjct:  225 FAQAPLFIGFFLAIRRMSENLPSFKEGGLFWFTDLSGADPTYLLPTICAATFLITVEVGAMEGMQGQPMAKTMKMAMRVLGVAMVPLTMSFEKALFCYWIPSNLFSLLQSSLLKVPKVKEALGIPTLNE 353          
BLAST of mRNA_P-wetherbeei_contig14044.1.1 vs. uniprot
Match: A0A662YKN5_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YKN5_9STRA)

HSP 1 Score: 101 bits (252), Expect = 5.840e-24
Identity = 50/124 (40.32%), Postives = 78/124 (62.90%), Query Frame = 1
Query:   28 SQLPVFASFFFGLQKMGEFVPAFSHGGALWFPDLAAADPTGTLPVLTGVTFLIMAEVSADASVTGGAWARLM--LRVLSIAMVPLTYQTASGVFLYWLTSNACSIVQALVMKRPAVRAALDIPI 393
            SQ+PVF  FF+GLQ + ++ P ++H G  W PDL+ ADPT  LPV++    +   E+  D S+TG    +L   +R+ ++AM+PLT    SG+F+YW+TSN  ++ Q   M+   V+ A +IP+
Sbjct:   53 SQIPVFLGFFWGLQNISQYFPDYAHEGVAWVPDLSVADPTMALPVISSALMVASVELGGD-SLTGEMQDKLKFGMRMFALAMIPLTMNFQSGIFVYWVTSNMFTLTQTAAMRLHVVKRAFNIPV 175          
BLAST of mRNA_P-wetherbeei_contig14044.1.1 vs. uniprot
Match: A0A8C2SU16_COTJA (OXA1L mitochondrial inner membrane protein n=2 Tax=Coturnix japonica TaxID=93934 RepID=A0A8C2SU16_COTJA)

HSP 1 Score: 103 bits (256), Expect = 2.910e-23
Identity = 58/139 (41.73%), Postives = 85/139 (61.15%), Query Frame = 1
Query:   31 QLPVFASFFFGLQKMGEF-VPAFSHGGALWFPDLAAADPTGTLPVLTGVTFLIMAEVSADASVTG---GAWARLMLRVLSIAMVPLTYQTASGVFLYWLTSNACSIVQALVMKRPAVRAALDIPIVPERLKKEAAAASP 435
            Q P+F SFF  LQ+M    VP F HGGA W  DL+  DPT  LP+L+  T  ++ E   ++ V+    GA  R++LR+L +  +P+T    + +F+YWLTSN+ S++QAL+++ P VR+AL IP +P     E   A P
Sbjct:  207 QTPIFISFFLALQQMAALPVPGFQHGGAGWINDLSCPDPTYALPLLSSATMWMVLEAGVESGVSSPQAGA-VRVVLRLLPLLFLPMTIHFPAAIFVYWLTSNSFSLLQALLLRVPVVRSALRIPALPHNPPMEPNGAGP 344          
BLAST of mRNA_P-wetherbeei_contig14044.1.1 vs. uniprot
Match: A0A7S4E290_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E290_9STRA)

HSP 1 Score: 103 bits (256), Expect = 3.290e-23
Identity = 61/144 (42.36%), Postives = 87/144 (60.42%), Query Frame = 1
Query:   28 SQLPVFASFFFGLQKMGEFVPA-FSHGGALWFPDLAAADPTGTLPVLTGVTFLIMAEVSAD-----ASVTGGAWARLMLRVLSIAMVPLTYQTASGVFLYWLTSNACSIVQALVMKR-PAVRAALDIPIVPERLKKEAAAASPM 438
            +QLPVF S FFGL++  E  PA  + GG LWFPDL+ ADPT  LP++T   FL+M EV AD     A+       + ++R + + MVP TY   + VF YW+++NA S+ Q +++ + P VR AL +PIV  + K     A P+
Sbjct:  189 AQLPVFMSMFFGLRRAAESFPAECASGGMLWFPDLSVADPTYALPLITSGLFLVMIEVGADGMNASANKDQAKTMKNVMRGMGVLMVPFTYHFPASVFCYWVSANAFSLGQTVLLNKVPGVREALGVPIVQTQSKVRKPTAPPV 332          
BLAST of mRNA_P-wetherbeei_contig14044.1.1 vs. uniprot
Match: UPI001C67F381 (mitochondrial inner membrane protein OXA1L-like n=1 Tax=Lagopus leucura TaxID=30410 RepID=UPI001C67F381)

HSP 1 Score: 99.4 bits (246), Expect = 6.210e-23
Identity = 55/124 (44.35%), Postives = 78/124 (62.90%), Query Frame = 1
Query:   31 QLPVFASFFFGLQKMGEF-VPAFSHGGALWFPDLAAADPTGTLPVLTGVTFLIMAEVSADASVTG---GAWARLMLRVLSIAMVPLTYQTASGVFLYWLTSNACSIVQALVMKRPAVRAALDIP 390
            Q PVF SFF  LQ+M    VP    GG  W  DL++ DPT  +P+LT  T  ++ E  A++ V+    GA  R +LRVL +  +P+T    + +F+YWLTSN  S++QAL+++ PAVR+AL IP
Sbjct:   84 QTPVFVSFFLALQQMAAVPVPGLKGGGVAWISDLSSPDPTYAMPLLTSATMWMVLEAGAESGVSSPHAGA-VRAVLRVLPLVFLPMTVHFPAAIFVYWLTSNTFSLLQALLLRLPAVRSALRIP 206          
BLAST of mRNA_P-wetherbeei_contig14044.1.1 vs. uniprot
Match: A0A5D6XG61_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XG61_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.090e-22
Identity = 54/133 (40.60%), Postives = 82/133 (61.65%), Query Frame = 1
Query:   28 SQLPVFASFFFGLQKMGEFVPAFSHGGALWFPDLAAADPTGTLPVLTGVTFLIMAEVSADA-------SVTGGAWARLMLRVLSIAMVPLTYQTASGVFLYWLTSNACSIVQALVMKRPAVRAALDIPIVPER 405
            +Q+PVF  FF+GLQ + ++ P +S  G LWF DL+ ADPT  LPV++ V  +   E+  DA        VT G      +R L++AMVP+T   +SG+F+YW++SN  ++VQ   ++  AV+ AL IP++  R
Sbjct:  199 TQIPVFLGFFWGLQSIAKYFPEYSTEGTLWFQDLSLADPTMALPVISSVLMVASVELGGDALPEEYREKVTFG------MRALAVAMVPITMNFSSGIFVYWVSSNLFTVVQTGALRINAVKRALKIPVIETR 325          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14044.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A813A6K2_SYMMI1.170e-3148.41OXA1 protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
A0A7S3XMS5_HETAK5.150e-2748.46Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S3XPC4_HETAK1.200e-2544.70Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A1Y1Y304_9FUNG2.760e-2442.96Uncharacterized protein n=1 Tax=Basidiobolus meris... [more]
A0A1Y1ICP8_KLENI2.820e-2443.41Cytochrome oxidase biogenesis protein n=1 Tax=Kleb... [more]
A0A662YKN5_9STRA5.840e-2440.32Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A8C2SU16_COTJA2.910e-2341.73OXA1L mitochondrial inner membrane protein n=2 Tax... [more]
A0A7S4E290_9STRA3.290e-2342.36Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
UPI001C67F3816.210e-2344.35mitochondrial inner membrane protein OXA1L-like n=... [more]
A0A5D6XG61_9STRA1.090e-2240.60Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14044contigP-wetherbeei_contig14044:413..1467 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog42099.EPrPV00000022976
PFAMs60KD_IMP
Model size438
Max annot lvl121069|Pythiales
Hectar predicted targeting categorysignal peptide
Exons3
Evalue6.28e-28
EggNOG OGsCOG0706@1|root,KOG1239@2759|Eukaryota,1MCWG@121069|Pythiales
Ec32 ortholog descriptionOxa1 or Cox18/Oxa2 homolog, mitochondrial integral inner membrane protein
Ec32 orthologEc-06_007520.1
DescriptionMitochondrial inner membrane protein OXA1. Source PGD
Cds size438
COG categoryOU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186006.6182659-CDS-P-wetherbeei_contig14044:412..5081683186006.6182659-CDS-P-wetherbeei_contig14044:412..508Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14044 413..508 -
1683186006.631454-CDS-P-wetherbeei_contig14044:811..9641683186006.631454-CDS-P-wetherbeei_contig14044:811..964Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14044 812..964 -
1683186006.641166-CDS-P-wetherbeei_contig14044:1278..14671683186006.641166-CDS-P-wetherbeei_contig14044:1278..1467Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14044 1279..1467 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14044.1.1prot_P-wetherbeei_contig14044.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14044 413..1467 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14044.1.1

>prot_P-wetherbeei_contig14044.1.1 ID=prot_P-wetherbeei_contig14044.1.1|Name=mRNA_P-wetherbeei_contig14044.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=146bp
LFRRCSLIFSQLPVFASFFFGLQKMGEFVPAFSHGGALWFPDLAAADPTG
TLPVLTGVTFLIMAEVSADASVTGGAWARLMLRVLSIAMVPLTYQTASGV
FLYWLTSNACSIVQALVMKRPAVRAALDIPIVPERLKKEAAAASPM
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mRNA from alignment at P-wetherbeei_contig14044:413..1467-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14044.1.1 ID=mRNA_P-wetherbeei_contig14044.1.1|Name=mRNA_P-wetherbeei_contig14044.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1055bp|location=Sequence derived from alignment at P-wetherbeei_contig14044:413..1467- (Phaeothamnion wetherbeei SAG_119_79)
CTTTTCCGCCGATGTTCCTTGATTTTTTCGCAGCTGCCGGTGTTTGCGTC CTTTTTCTTCGGACTCCAAAAGATGGGAGAGTTCGTGCCAGCCTTCTCCC ATGGCGGGGCGCTCTGGTTTCCAGACCTGGCCGCGGCTGATCCGACTGGA ACGCTTCCGGTCCTCACCGGCGTCACCTTCCTCATAATGGTGAGCGAAGC GGGCAGCGAAAAGAGTGGTCGGAATGTTCGGCTTTCTTTTTCCTTGGTCG CGACTTGGACGGTCGGGGCTTCTCAGTGTCCTTTGGGGAAGAGGCCAACG CTCCTCTTCTCCGGATGGCGCGGTCTTTTCGCACCACAGGGAAGGGCCTT TGTTGCATTCATTCCGAGTTTATTTTTCCTCCCTGGCTGCTATCCACGCT TCCATTCTCCGGAAACCGCTTCTGTCATTCTGGTTTGCCGCTTCCAACCC AATCCTTTCCGAAACCGTTTTCCGAAATGGAAACTAAAAATGCCGGCCGC CAGGCGGAGGTGAGCGCGGACGCGAGTGTGACGGGCGGCGCCTGGGCGCG GCTGATGCTGCGTGTGCTGTCAATTGCCATGGTACCTCTGACCTACCAGA CCGCCTCGGGTGTCTTCCTCTACTGGCTCACCAGCAACGCCTGCTCCATA GTGCAGGTCGGTTTCGGGTCGGCTGTTTGCGTGTGCGGCTGGCTGCGACC GGTGGGAACTTCTTGGTTGACCGGTTGAAGCAGATGGCTTTGTTTCAACA GCGGGAAGTCTCTTCTTTAACTCGCTCGTCTCTTTGCGCCCGCTTTCTCT TGCCTTTCTTTTATTTCGGTGTCAGCACTGAGCGCATTTTCAGTCGTTTA CGTACATTCTTCTGTTTCATGTCTTGTTTATTCTGTTCTGGGAGAAGAAC AGAGCAATCTTGTTCCTTACTAGGGCTTCCCACCTTTCGTCTTGCTCGGC GCGTGTCAGGCGCTAGTGATGAAGCGGCCGGCGGTGCGCGCTGCCCTCGA TATCCCCATCGTGCCCGAGCGCCTCAAGAAGGAGGCCGCCGCCGCCTCCC CCATG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14044:413..1467-

>mRNA_P-wetherbeei_contig14044.1.1 ID=mRNA_P-wetherbeei_contig14044.1.1|Name=mRNA_P-wetherbeei_contig14044.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=438bp|location=Sequence derived from alignment at P-wetherbeei_contig14044:413..1467- (Phaeothamnion wetherbeei SAG_119_79)
CTTTTCCGCCGATGTTCCTTGATTTTTTCGCAGCTGCCGGTGTTTGCGTC
CTTTTTCTTCGGACTCCAAAAGATGGGAGAGTTCGTGCCAGCCTTCTCCC
ATGGCGGGGCGCTCTGGTTTCCAGACCTGGCCGCGGCTGATCCGACTGGA
ACGCTTCCGGTCCTCACCGGCGTCACCTTCCTCATAATGGCGGAGGTGAG
CGCGGACGCGAGTGTGACGGGCGGCGCCTGGGCGCGGCTGATGCTGCGTG
TGCTGTCAATTGCCATGGTACCTCTGACCTACCAGACCGCCTCGGGTGTC
TTCCTCTACTGGCTCACCAGCAACGCCTGCTCCATAGTGCAGGCGCTAGT
GATGAAGCGGCCGGCGGTGCGCGCTGCCCTCGATATCCCCATCGTGCCCG
AGCGCCTCAAGAAGGAGGCCGCCGCCGCCTCCCCCATG
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