mRNA_P-wetherbeei_contig13935.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13935.1.1
Unique NamemRNA_P-wetherbeei_contig13935.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13935.1.1 vs. uniprot
Match: D8UCE8_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UCE8_VOLCA)

HSP 1 Score: 77.0 bits (188), Expect = 2.950e-14
Identity = 37/92 (40.22%), Postives = 56/92 (60.87%), Query Frame = 1
Query:    1 KLLQQMRAYRAGVAPFDVMVCESRCHGAVRAWWIQVGQCPGGDIISKLAIVLLDVVPHAAAPERTFSLLGWLQSERRNRMDVATVGALAAIK 276
            +L+ Q+  Y A   PFD+    S     +R WW+ +   P  D+I+++A+ +LD+VPHAA+ ERTFS++GW Q +R NR    TV  +  IK
Sbjct:   94 RLVSQLVVYNARQEPFDLPPNGSSFDD-LRLWWLSMLPLPSADMIAQVALTILDIVPHAASMERTFSIMGWFQDKRSNRFKDETVKKMTTIK 184          
BLAST of mRNA_P-wetherbeei_contig13935.1.1 vs. uniprot
Match: A0A0U9HKN3_KLENI (BED-type domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HKN3_KLENI)

HSP 1 Score: 72.4 bits (176), Expect = 1.740e-12
Identity = 35/102 (34.31%), Postives = 63/102 (61.76%), Query Frame = 1
Query:    1 KLLQQMRAYRAGVAPFDVMVCESRCHGAVRAWWIQVGQCPGGDIISKLAIVLLDVVPHAAAPERTFSLLGWLQSERRNRMDVATVGALAAIKMHHVQGEAPR 306
            +L+ +M  Y+AG  PF +++        +R WW Q  +    + ++ LA+++ D+VPHA   ER FS++GW+Q+++RNR+   T+  +A +K+ H Q + PR
Sbjct:  423 QLMHEMVMYKAGEGPFGLVIAPETFD--LRLWW-QTVRNKQYNTLAALALIIADIVPHAGDIERVFSMMGWMQNDKRNRLGTGTLELMAKVKVFH-QVQKPR 520          
BLAST of mRNA_P-wetherbeei_contig13935.1.1 vs. uniprot
Match: E3KU84_PUCGT (DUF659 domain-containing protein n=1 Tax=Puccinia graminis f. sp. tritici (strain CRL 75-36-700-3 / race SCCL) TaxID=418459 RepID=E3KU84_PUCGT)

HSP 1 Score: 61.2 bits (147), Expect = 1.420e-8
Identity = 31/87 (35.63%), Postives = 53/87 (60.92%), Query Frame = 1
Query:   94 WWIQVGQCPGGDIISKLAIVLLDVVPHAAAPERTFSLLGWLQSERRNRMDVATVGALAAIKMHHVQGE---APRLLARARDMPPPSK 345
            +W+ V   P  + + K+AI +L++VPHAA  E  FS +  ++++ RNRM   T+  LA +K+H ++G+   APR   R ++  P S+
Sbjct:  334 YWLMVPNTPESNALKKVAIGILEIVPHAAGVEGLFSTMSAIKTKARNRMSPKTLKMLAQLKLHLLEGDRLLAPRRQRRQKNATPDSE 420          
BLAST of mRNA_P-wetherbeei_contig13935.1.1 vs. uniprot
Match: A0A2N5S5Q1_9BASI (Uncharacterized protein n=1 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5S5Q1_9BASI)

HSP 1 Score: 59.7 bits (143), Expect = 3.510e-8
Identity = 36/111 (32.43%), Postives = 59/111 (53.15%), Query Frame = 1
Query:    4 LLQQMRAYRAGVAPFDVMVCESRCHGAVRAWWIQVGQCPGGDIISKLAIVLLDVVPHAAAPERTFSLLGWLQSERRNRMDVATVGALAAIKMHHVQGE---APRLLARARD 327
            L   M  Y   + P+D    E        A+W++V   P   ++ KLAI +L++VPHAA  E  FS++  ++++ RN+M   T+   A +K+H +QG+    PR   R +D
Sbjct:  104 LQDAMNRYYNSLFPYDSKKKEDPL-----AFWLKVPYTPKLALLKKLAIEILEIVPHAAGVEGLFSMMNAIKTKTRNQMSPNTLKMTAQLKLHLLQGDPLLVPRKKRRQKD 209          
BLAST of mRNA_P-wetherbeei_contig13935.1.1 vs. uniprot
Match: A0A2N5W988_9BASI (Uncharacterized protein n=1 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5W988_9BASI)

HSP 1 Score: 59.7 bits (143), Expect = 4.480e-8
Identity = 36/111 (32.43%), Postives = 59/111 (53.15%), Query Frame = 1
Query:    4 LLQQMRAYRAGVAPFDVMVCESRCHGAVRAWWIQVGQCPGGDIISKLAIVLLDVVPHAAAPERTFSLLGWLQSERRNRMDVATVGALAAIKMHHVQGE---APRLLARARD 327
            L   M  Y   + P+D    E        A+W++V   P   ++ KLAI +L++VPHAA  E  FS++  ++++ RN+M   T+   A +K+H +QG+    PR   R +D
Sbjct:  164 LQDAMNRYYNSLFPYDSKKKEDPL-----AFWLKVPYTPKLALLKKLAIEILEIVPHAAGVEGLFSMMNAIKTKTRNQMSPNTLKMTAQLKLHLLQGDPLLVPRKKRRQKD 269          
BLAST of mRNA_P-wetherbeei_contig13935.1.1 vs. uniprot
Match: E3KYW8_PUCGT (Uncharacterized protein n=1 Tax=Puccinia graminis f. sp. tritici (strain CRL 75-36-700-3 / race SCCL) TaxID=418459 RepID=E3KYW8_PUCGT)

HSP 1 Score: 59.3 bits (142), Expect = 6.690e-8
Identity = 34/108 (31.48%), Postives = 59/108 (54.63%), Query Frame = 1
Query:    4 LLQQMRAYRAGVAPFDVMVCESRCHGAVRAWWIQVGQCPGGDIISKLAIVLLDVVPHAAAPERTFSLLGWLQSERRNRMDVATVGALAAIKMHHVQGEAPRLLARARD 327
            L   +  Y   + P++        H     +W+ V   P  + + KLAI +L++VPHAA  E  FS++  ++++ RNR+   T+  +A IK+H +QG+ P L AR ++
Sbjct:  288 LRDAVHRYYNAIYPYNSKTISKPLH-----YWLTVPYTPESESLKKLAIGILEIVPHAAGVEGLFSMMTAMKTKSRNRILPNTLKMMAQIKLHLLQGD-PLLAARRKN 389          
BLAST of mRNA_P-wetherbeei_contig13935.1.1 vs. uniprot
Match: A0A015M5S5_RHIIW (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015M5S5_RHIIW)

HSP 1 Score: 58.5 bits (140), Expect = 6.810e-8
Identity = 31/96 (32.29%), Postives = 53/96 (55.21%), Query Frame = 1
Query:    4 LLQQMRAYRAGVAPFDVMVCESRCHGAVRAWWIQVGQCPGGDI-ISKLAIVLLDVVPHAAAPERTFSLLGWLQSERRNRMDVATVGALAAIKMHHV 288
            L+ Q++++      +++    SR  G V  WWI        +  I KLA+ +L + PH A  ER FS+LGW  ++RR+R+ V  + A+A +  H++
Sbjct:  124 LISQIQSFYLKKEEYNIPYSASR--GDVLTWWILCNPVRNEENHIQKLALKILAITPHNAGCERVFSVLGWFANQRRSRLKVEKLEAMAKLHTHYI 217          
BLAST of mRNA_P-wetherbeei_contig13935.1.1 vs. uniprot
Match: E3KDS3_PUCGT (DUF659 domain-containing protein n=1 Tax=Puccinia graminis f. sp. tritici (strain CRL 75-36-700-3 / race SCCL) TaxID=418459 RepID=E3KDS3_PUCGT)

HSP 1 Score: 59.3 bits (142), Expect = 6.990e-8
Identity = 29/74 (39.19%), Postives = 48/74 (64.86%), Query Frame = 1
Query:   94 WWIQVGQCPGGDIISKLAIVLLDVVPHAAAPERTFSLLGWLQSERRNRMDVATVGALAAIKMHHVQGEAPRLLA 315
            +W+ V   P  + + K+AI +L++VPHAA  E  FS +  ++++ RNRM   T+  LA +K+H ++G+  RLLA
Sbjct:  552 YWLMVPDTPESNALKKVAIGVLEIVPHAAGVEGLFSTMSAIKTKSRNRMSPTTLKMLAQLKLHLLEGD--RLLA 623          
BLAST of mRNA_P-wetherbeei_contig13935.1.1 vs. uniprot
Match: U9SPW4_RHIID (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) TaxID=747089 RepID=U9SPW4_RHIID)

HSP 1 Score: 58.9 bits (141), Expect = 8.680e-8
Identity = 31/96 (32.29%), Postives = 53/96 (55.21%), Query Frame = 1
Query:    4 LLQQMRAYRAGVAPFDVMVCESRCHGAVRAWWIQVGQCPGGDI-ISKLAIVLLDVVPHAAAPERTFSLLGWLQSERRNRMDVATVGALAAIKMHHV 288
            L+ Q++++      +++    SR  G V  WWI        +  I KLA+ +L + PH A  ER FS+LGW  ++RR+R+ V  + A+A +  H++
Sbjct:  124 LISQIQSFYLKKEEYNIPYSASR--GDVLTWWILYNSVHSEENHIQKLALKILAITPHNAGCERVFSVLGWFANQRRSRLKVEKLEAMAKLHTHYI 217          
BLAST of mRNA_P-wetherbeei_contig13935.1.1 vs. uniprot
Match: A0A180GVA7_PUCT1 (DUF659 domain-containing protein n=1 Tax=Puccinia triticina (isolate 1-1 / race 1 (BBBD)) TaxID=630390 RepID=A0A180GVA7_PUCT1)

HSP 1 Score: 58.9 bits (141), Expect = 9.270e-8
Identity = 27/68 (39.71%), Postives = 44/68 (64.71%), Query Frame = 1
Query:   94 WWIQVGQCPGGDIISKLAIVLLDVVPHAAAPERTFSLLGWLQSERRNRMDVATVGALAAIKMHHVQGE 297
            +W+ V      + + KLAI LL +VPHAA  ER FS++  ++++ RNRM   T+  ++ IK+H +QG+
Sbjct:  478 YWLMVPHSLDSESLKKLAIGLLQIVPHAAGVERLFSMMAAMKTKTRNRMSPNTLKMMSQIKLHLLQGD 545          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13935.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D8UCE8_VOLCA2.950e-1440.22Uncharacterized protein n=1 Tax=Volvox carteri f. ... [more]
A0A0U9HKN3_KLENI1.740e-1234.31BED-type domain-containing protein n=1 Tax=Klebsor... [more]
E3KU84_PUCGT1.420e-835.63DUF659 domain-containing protein n=1 Tax=Puccinia ... [more]
A0A2N5S5Q1_9BASI3.510e-832.43Uncharacterized protein n=1 Tax=Puccinia coronata ... [more]
A0A2N5W988_9BASI4.480e-832.43Uncharacterized protein n=1 Tax=Puccinia coronata ... [more]
E3KYW8_PUCGT6.690e-831.48Uncharacterized protein n=1 Tax=Puccinia graminis ... [more]
A0A015M5S5_RHIIW6.810e-832.29Dimer_Tnp_hAT domain-containing protein n=1 Tax=Rh... [more]
E3KDS3_PUCGT6.990e-839.19DUF659 domain-containing protein n=1 Tax=Puccinia ... [more]
U9SPW4_RHIID8.680e-832.29Dimer_Tnp_hAT domain-containing protein n=1 Tax=Rh... [more]
A0A180GVA7_PUCT19.270e-839.71DUF659 domain-containing protein n=1 Tax=Puccinia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13935contigP-wetherbeei_contig13935:1309..1653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog5297.GMQ_10506T0
PFAMsDUF659
Model size345
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.5e-09
EggNOG OGs2E1UA@1|root,2S94A@2759|Eukaryota,3A9M8@33154|Opisthokonta,3P86N@4751|Fungi,3V5G8@5204|Basidiomycota,2YG67@29000|Pucciniomycotina
Cds size330
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186002.5826-CDS-P-wetherbeei_contig13935:1308..16381683186002.5826-CDS-P-wetherbeei_contig13935:1308..1638Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13935 1309..1638 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186002.5925846-UTR-P-wetherbeei_contig13935:1638..16531683186002.5925846-UTR-P-wetherbeei_contig13935:1638..1653Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13935 1639..1653 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13935.1.1prot_P-wetherbeei_contig13935.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13935 1309..1638 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13935.1.1

>prot_P-wetherbeei_contig13935.1.1 ID=prot_P-wetherbeei_contig13935.1.1|Name=mRNA_P-wetherbeei_contig13935.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=110bp
MRAYRAGVAPFDVMVCESRCHGAVRAWWIQVGQCPGGDIISKLAIVLLDV
VPHAAAPERTFSLLGWLQSERRNRMDVATVGALAAIKMHHVQGEAPRLLA
RARDMPPPSK
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mRNA from alignment at P-wetherbeei_contig13935:1309..1653-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13935.1.1 ID=mRNA_P-wetherbeei_contig13935.1.1|Name=mRNA_P-wetherbeei_contig13935.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig13935:1309..1653- (Phaeothamnion wetherbeei SAG_119_79)
AAGCTCTTGCAGCAGATGCGGGCCTACCGCGCGGGCGTGGCGCCATTCGA CGTGATGGTATGTGAGAGCCGCTGTCACGGTGCTGTGCGCGCGTGGTGGA TTCAGGTCGGCCAGTGCCCGGGCGGCGACATCATCTCAAAACTGGCCATC GTGCTGCTTGATGTGGTTCCCCATGCTGCCGCCCCGGAGCGCACCTTCAG CTTGCTGGGCTGGCTGCAGTCGGAGCGCCGCAACCGCATGGACGTCGCCA CCGTAGGTGCTCTGGCGGCCATCAAGATGCACCACGTTCAGGGAGAGGCG CCTCGCCTCCTGGCAAGGGCCCGGGATATGCCGCCGCCATCCAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13935:1309..1653-

>mRNA_P-wetherbeei_contig13935.1.1 ID=mRNA_P-wetherbeei_contig13935.1.1|Name=mRNA_P-wetherbeei_contig13935.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig13935:1309..1653- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGGCCTACCGCGCGGGCGTGGCGCCATTCGACGTGATGGTATGTGA
GAGCCGCTGTCACGGTGCTGTGCGCGCGTGGTGGATTCAGGTCGGCCAGT
GCCCGGGCGGCGACATCATCTCAAAACTGGCCATCGTGCTGCTTGATGTG
GTTCCCCATGCTGCCGCCCCGGAGCGCACCTTCAGCTTGCTGGGCTGGCT
GCAGTCGGAGCGCCGCAACCGCATGGACGTCGCCACCGTAGGTGCTCTGG
CGGCCATCAAGATGCACCACGTTCAGGGAGAGGCGCCTCGCCTCCTGGCA
AGGGCCCGGGATATGCCGCCGCCATCCAAG
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