mRNA_P-wetherbeei_contig13908.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13908.1.1
Unique NamemRNA_P-wetherbeei_contig13908.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13908.1.1 vs. uniprot
Match: UPI00198B6C79 (Flavin reductase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI00198B6C79)

HSP 1 Score: 207 bits (526), Expect = 1.350e-65
Identity = 100/160 (62.50%), Postives = 117/160 (73.12%), Query Frame = 1
Query:   19 MDPVDIKQFTTAMRRAATPVSVVTTEGPGGRFGVTVSSICTASAEPPQVLVCVHLGGPTPVALRANKCFAVNILDSRHRHVADSFAGRIERWRQDRFACDAWNTIATGAPVLSDGLLVLDCELTQELVVSTHAVFVGLVVGLQSREGAPLLYSDQAYRTL 498
            M   D   F  AMRRAAT VSVVTT+GPGGR GVTVSS CTA+A+PPQ+L CV   GP   A+RAN+ F VN+LD  HRHVADSFAGR+ERWR DRFACD W T+ATGAPVL  G++ LDC L  E  +STH VF+G V  +   EG+PLLY+D  YR +
Sbjct:    1 MSQFDPNLFKLAMRRAATAVSVVTTDGPGGRVGVTVSSFCTATADPPQMLACVGKSGPAAAAIRANRVFCVNVLDRVHRHVADSFAGRVERWRNDRFACDQWKTLATGAPVLDHGMIALDCTLIHETELSTHFVFIGHVESVAVNEGSPLLYADAHYRRM 160          
BLAST of mRNA_P-wetherbeei_contig13908.1.1 vs. uniprot
Match: J3CC52_9BURK (Conserved protein of DIM6/NTAB family n=2 Tax=Herbaspirillum sp. YR522 TaxID=1144342 RepID=J3CC52_9BURK)

HSP 1 Score: 159 bits (403), Expect = 9.030e-47
Identity = 80/152 (52.63%), Postives = 100/152 (65.79%), Query Frame = 1
Query:   43 FTTAMRRAATPVSVVTTEGPGGRFGVTVSSICTASAEPPQVLVCVHLGGPTPVALRANKCFAVNILDSRHRHVADSFAGRIERWRQDRFACDAWNTIATGAPVLSDGLLVLDCELTQELVVSTHAVFVGLVVGLQSREGAPLLYSDQAYRTL 498
            F  AMR  A  V+VVTT+GPGGR GVTVS++C+ SA+PP VLVC+H   P    +R N  F VN+L +   HVADSFAGRI +WR DRFAC  W T A+GAPVL   L  LDC L +++  +THAV +G V  +       LLY D+AYR +
Sbjct:   21 FLDAMRHTAASVAVVTTDGPGGRAGVTVSAVCSLSADPPSVLVCIHEKSPVLDIIRRNASFCVNLLGADQSHVADSFAGRIPKWRADRFACADWETAASGAPVLRQALASLDCSLARDVHHATHAVLIGEVGAIHMAPRDGLLYVDRAYRCI 172          
BLAST of mRNA_P-wetherbeei_contig13908.1.1 vs. uniprot
Match: A0A7Z0MBP6_9BURK (Flavin reductase n=1 Tax=Alcaligenaceae bacterium TaxID=2021368 RepID=A0A7Z0MBP6_9BURK)

HSP 1 Score: 150 bits (379), Expect = 2.970e-43
Identity = 78/156 (50.00%), Postives = 99/156 (63.46%), Query Frame = 1
Query:   22 DPVDIKQFTTAMRRAATPVSVVTTEGPGGRFGVTVSSICTASAEPPQVLVCVHLGGPTPVALRANKCFAVNILDSRHRHVADSFAGRIERWRQDRFACDAWNTIATGAPVLSDGLLVLDCELTQELVVSTHAVFVGLVVGLQSREGAPLLYSDQAY 489
            D VD   F  AMR A + V+VVTT+GP GR G+T+S++C+ SA+PP VLVC++   P    ++AN  F VN+L   HR VAD FAGRI   R DRFAC  W   ATGAP L D L  LDCEL      ++H V +G VV L+ R   PL+Y D++Y
Sbjct:    6 DAVDRAAFLEAMRCAVSSVTVVTTDGPAGRAGLTISAMCSLSADPPAVLVCINRLSPVLGIIQANGNFCVNLLGLEHRKVADVFAGRIPALRNDRFACAQWERGATGAPALVDALTALDCELVSHTSFASHEVLIGRVVDLRMRHQDPLIYVDRSY 161          
BLAST of mRNA_P-wetherbeei_contig13908.1.1 vs. uniprot
Match: A0A4D7BKA5_9HYPH (Flavin reductase n=2 Tax=Phreatobacter stygius TaxID=1940610 RepID=A0A4D7BKA5_9HYPH)

HSP 1 Score: 146 bits (368), Expect = 9.560e-42
Identity = 75/161 (46.58%), Postives = 97/161 (60.25%), Query Frame = 1
Query:   19 MDPVDIKQFTTAMRRAATPVSVVTTEGPGGRFGVTVSSICTASAEPPQVLVCVHLGGPTPVALRANKCFAVNILDSRHRHVADSFAGRIERWRQDRFACDAWNTIATGAPVLSDGLLVLDCELTQELVVSTHAVFVGLVVGLQSREGAPLLYSDQAYRTLE 501
            M PVD  +F  AMR   + V+VVTT+GP GR G+TVS++C+ S EPP V+VC+H    +   L  N  FA N L     HVAD+FAG +   R DRFA  AW+ + TGAPVL   L   DC +       +H + VG V+GL     APL+YSD+AYR L+
Sbjct:    1 MAPVDGARFREAMRLTVSGVAVVTTDGPHGRGGMTVSTLCSLSMEPPSVVVCIHAANRSLQTLIDNGVFAANALADGQEHVADTFAGLVAALRDDRFAAGAWSVLGTGAPVLDGALCSFDCRVASVFAFGSHRIVVGEVLGLNVTPAAPLVYSDRAYRRLQ 161          
BLAST of mRNA_P-wetherbeei_contig13908.1.1 vs. uniprot
Match: UPI001C59B472 (flavin reductase family protein n=1 Tax=Pseudomonas sp. UMAB-08 TaxID=1365375 RepID=UPI001C59B472)

HSP 1 Score: 146 bits (368), Expect = 1.790e-41
Identity = 72/154 (46.75%), Postives = 102/154 (66.23%), Query Frame = 1
Query:   40 QFTTAMRRAATPVSVVTTEGPGGRFGVTVSSICTASAEPPQVLVCVHLGGPTPVALRANKCFAVNILDSRHRHVADSFAGRIERWRQDRFACDAWNTIATGAPVLSDGLLVLDCELTQELVVSTHAVFVGLVVGLQSREGAPLLYSDQAYRTLE 501
            +F  AM + AT V+V+TT+G GGRFGVTVS++ + SAEPP +LVCV+       A+  N CF VN++++  + VA  FAG+I+    DRFAC  W    TGAP+L + L   DC + Q++ + TH VF+G VV ++SREGAPL YS + +  L+
Sbjct:   26 EFIAAMGKCATGVTVITTDGAGGRFGVTVSAMTSVSAEPPLLLVCVNRNNLASKAIDQNGCFCVNVIETEQQPVAQVFAGQIKLENGDRFACADWTQHTTGAPLLDNALASFDCHIEQQMDLGTHTVFIGKVVAVKSREGAPLAYSHRKFCGLQ 179          
BLAST of mRNA_P-wetherbeei_contig13908.1.1 vs. uniprot
Match: UPI001BCCE15C (flavin reductase family protein n=4 Tax=Ancylobacter TaxID=99 RepID=UPI001BCCE15C)

HSP 1 Score: 142 bits (358), Expect = 3.970e-40
Identity = 77/158 (48.73%), Postives = 95/158 (60.13%), Query Frame = 1
Query:   28 VDIKQFTTAMRRAATPVSVVTTEGPGGRFGVTVSSICTASAEPPQVLVCVHLGGPTPVALRANKCFAVNILDSRHRHVADSFAGRIERWRQDRFACDAWNTIATGAPVLSDGLLVLDCELTQELVVSTHAVFVGLVVGLQSREGAPLLYSDQAYRTLE 501
            +D   F  AM R A+ V+VVTT+G  GR GVTVSS+C+ S EPP VL C+H G      L +N  FA NIL      VADSFAG I   R+DRFA   W+ + TGAPVL D L   DC++       TH +  G VV L+S E  PL+YS++AY  LE
Sbjct:   12 IDAALFRQAMGRTASGVTVVTTDGDAGRGGVTVSSLCSLSMEPPSVLFCLHKGSRILSTLMSNGVFAANILAHDQHRVADSFAGLIPELREDRFAVADWDALHTGAPVLRDALCRFDCKIASVFEFGTHHIIAGEVVALESFETKPLVYSNRAYHKLE 169          
BLAST of mRNA_P-wetherbeei_contig13908.1.1 vs. uniprot
Match: A0A853G4Z9_9BURK (Flavin reductase family protein n=2 Tax=Parapusillimonas granuli TaxID=380911 RepID=A0A853G4Z9_9BURK)

HSP 1 Score: 142 bits (358), Expect = 7.570e-40
Identity = 71/150 (47.33%), Postives = 93/150 (62.00%), Query Frame = 1
Query:   43 FTTAMRRAATPVSVVTTEGPGGRFGVTVSSICTASAEPPQVLVCVHLGGPTPVALRANKCFAVNILDSRHRHVADSFAGRIERWRQDRFACDAWNTIATGAPVLSDGLLVLDCELTQELVVSTHAVFVGLVVGLQSREGAPLLYSDQAYR 492
            F  AMR AA  V+V+TT+GP GR GVTVS+ C+ SA+PP VL CVH   P    +R N+   VN+L +   HVADSFAGRI +WR +RFAC  W+ +  GAP L   L   +C L  E+   +H + +G V  + S     LLY+D+AYR
Sbjct:   30 FLHAMRHAAASVTVLTTDGPAGRGGVTVSAFCSLSADPPSVLACVHQASPVLKLIRENRRVCVNLLATDQTHVADSFAGRIAQWRSNRFACAEWDEVENGAPQLRGALASFNCTLAGEMPFGSHYILIGRVEQVASSARGGLLYADRAYR 179          
BLAST of mRNA_P-wetherbeei_contig13908.1.1 vs. uniprot
Match: A0A858X629_9HYPH (Flavin reductase n=1 Tax=Starkeya sp. ORNL1 TaxID=2709380 RepID=A0A858X629_9HYPH)

HSP 1 Score: 141 bits (355), Expect = 8.890e-40
Identity = 73/160 (45.62%), Postives = 94/160 (58.75%), Query Frame = 1
Query:   19 MDPVDIKQFTTAMRRAATPVSVVTTEGPGGRFGVTVSSICTASAEPPQVLVCVHLGGPTPVALRANKCFAVNILDSRHRHVADSFAGRIERWRQDRFACDAWNTIATGAPVLSDGLLVLDCELTQELVVSTHAVFVGLVVGLQSREGAPLLYSDQAYRTL 498
            M+ +D   F  AM R A  V+VVTT+G  GRFGVTVS++C+ S EPP VL C+H        L AN  FA NIL +    VADSFAG I  WR+DRF    W+   TGAP+L   L   DC +       +H +  G V+ +++  G PL+YSD+AYR L
Sbjct:    1 MNALDPTHFRAAMGRTAAGVTVVTTDGEAGRFGVTVSTLCSLSLEPPSVLFCIHRESRALPYLIANDVFAANILAADQHRVADSFAGLIPEWREDRFQAGTWDRRITGAPLLHGALCRFDCRIASVFDFGSHRIVAGEVLDVETGSGEPLIYSDRAYRRL 160          
BLAST of mRNA_P-wetherbeei_contig13908.1.1 vs. uniprot
Match: UPI001BCAB653 (flavin reductase family protein n=1 Tax=Ancylobacter sp. VKM B-3255 TaxID=2836179 RepID=UPI001BCAB653)

HSP 1 Score: 137 bits (346), Expect = 2.050e-38
Identity = 73/161 (45.34%), Postives = 94/161 (58.39%), Query Frame = 1
Query:   19 MDPVDIKQFTTAMRRAATPVSVVTTEGPGGRFGVTVSSICTASAEPPQVLVCVHLGGPTPVALRANKCFAVNILDSRHRHVADSFAGRIERWRQDRFACDAWNTIATGAPVLSDGLLVLDCELTQELVVSTHAVFVGLVVGLQSREGAPLLYSDQAYRTLE 501
            M  +D   F TAM R A+ V+VVTT+G  GR GVTVSS+C+ S EPP VL C+H        L  N  FA NIL      VADSFAG I  +R+DRFA   W+ + TGAP+L   L   DC +       TH +  G V+ L++ E  PL+YS++AY  L+
Sbjct:    1 MSQIDAGHFRTAMGRTASGVTVVTTDGAAGRGGVTVSSLCSLSMEPPSVLFCLHKDSRVLPTLLENGVFAANILAHDQHRVADSFAGLIAEYREDRFAIADWDALTTGAPLLKGALCRFDCRIASVFGFGTHHIIAGEVMALETAETRPLVYSNRAYHHLK 161          
BLAST of mRNA_P-wetherbeei_contig13908.1.1 vs. uniprot
Match: A0A1Y0KM04_9PSED (Flavin_Reduct domain-containing protein n=1 Tax=Pseudomonas sp. M30-35 TaxID=1981174 RepID=A0A1Y0KM04_9PSED)

HSP 1 Score: 137 bits (346), Expect = 3.180e-38
Identity = 75/164 (45.73%), Postives = 101/164 (61.59%), Query Frame = 1
Query:    7 EAARMDPVDIKQFTTAMRRAATPVSVVTTEGPGGRFGVTVSSICTASAEPPQVLVCVHLGGPTPVALRANKCFAVNILDSRHRHVADSFAGRIERWRQDRFACDAWNTIATGAPVLSDGLLVLDCELTQELVVSTHAVFVGLVVGLQSREGAPLLYSDQAYRTL 498
            EAA +D      F  AM +  + V+VVTT+GPGGRFG+TVS++ + SAEPP +LVC++       A+  N CFAVN+L    + +A  FAG++     DRFAC +W    TGAPVL   L   DC L Q++ + +HAVFVG V   QS EG+ L YS + + TL
Sbjct:   14 EAAAVD------FIAAMGKCVSGVTVVTTDGPGGRFGLTVSAMSSVSAEPPLLLVCINRNNLACSAIDRNGCFAVNVLTGAQQQIAQVFAGQLPVAGGDRFACASWMEQHTGAPVLGQALASFDCYLEQQINLGSHAVFVGRVAQAQSAEGSALAYSQRIFGTL 171          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13908.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00198B6C791.350e-6562.50Flavin reductase n=1 Tax=Proteobacteria bacterium ... [more]
J3CC52_9BURK9.030e-4752.63Conserved protein of DIM6/NTAB family n=2 Tax=Herb... [more]
A0A7Z0MBP6_9BURK2.970e-4350.00Flavin reductase n=1 Tax=Alcaligenaceae bacterium ... [more]
A0A4D7BKA5_9HYPH9.560e-4246.58Flavin reductase n=2 Tax=Phreatobacter stygius Tax... [more]
UPI001C59B4721.790e-4146.75flavin reductase family protein n=1 Tax=Pseudomona... [more]
UPI001BCCE15C3.970e-4048.73flavin reductase family protein n=4 Tax=Ancylobact... [more]
A0A853G4Z9_9BURK7.570e-4047.33Flavin reductase family protein n=2 Tax=Parapusill... [more]
A0A858X629_9HYPH8.890e-4045.63Flavin reductase n=1 Tax=Starkeya sp. ORNL1 TaxID=... [more]
UPI001BCAB6532.050e-3845.34flavin reductase family protein n=1 Tax=Ancylobact... [more]
A0A1Y0KM04_9PSED3.180e-3845.73Flavin_Reduct domain-containing protein n=1 Tax=Ps... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13908contigP-wetherbeei_contig13908:135..635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1144342.PMI40_03069
PFAMsFlavin_Reduct
Model size501
Max annot lvl28216|Betaproteobacteria
KEGG rclassRC02732
KEGG koko:K09024
KEGG ReactionR09936
KEGG Pathwayko00240,ko01100,map00240,map01100
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.19e-47
EggNOG OGsCOG1853@1|root,COG1853@2|Bacteria,1MZKY@1224|Proteobacteria,2VWYS@28216|Betaproteobacteria
DescriptionPFAM flavin reductase domain protein, FMN-binding
Cds size483
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186001.4659114-UTR-P-wetherbeei_contig13908:134..1521683186001.4659114-UTR-P-wetherbeei_contig13908:134..152Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13908 135..152 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186001.4775202-CDS-P-wetherbeei_contig13908:152..6351683186001.4775202-CDS-P-wetherbeei_contig13908:152..635Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13908 153..635 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13908.1.1prot_P-wetherbeei_contig13908.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13908 153..635 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13908.1.1

>prot_P-wetherbeei_contig13908.1.1 ID=prot_P-wetherbeei_contig13908.1.1|Name=mRNA_P-wetherbeei_contig13908.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=161bp
MDPVDIKQFTTAMRRAATPVSVVTTEGPGGRFGVTVSSICTASAEPPQVL
VCVHLGGPTPVALRANKCFAVNILDSRHRHVADSFAGRIERWRQDRFACD
AWNTIATGAPVLSDGLLVLDCELTQELVVSTHAVFVGLVVGLQSREGAPL
LYSDQAYRTLE
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mRNA from alignment at P-wetherbeei_contig13908:135..635+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13908.1.1 ID=mRNA_P-wetherbeei_contig13908.1.1|Name=mRNA_P-wetherbeei_contig13908.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig13908:135..635+ (Phaeothamnion wetherbeei SAG_119_79)
ATCACCGAAGCAGCCCGCATGGATCCCGTCGATATCAAGCAATTCACCAC AGCCATGCGCCGCGCGGCGACCCCGGTTTCGGTCGTCACGACCGAAGGGC CCGGCGGGCGTTTCGGCGTGACCGTGAGTTCCATCTGCACCGCCTCGGCG GAGCCGCCGCAGGTCCTGGTGTGCGTGCACCTCGGCGGGCCCACGCCCGT GGCCCTCCGCGCGAACAAGTGCTTCGCGGTGAACATCCTCGACAGCCGCC ACCGCCACGTCGCCGACTCGTTCGCCGGCCGGATCGAGCGCTGGCGGCAG GACCGGTTTGCCTGCGATGCGTGGAACACGATCGCAACCGGTGCGCCCGT GCTGAGCGACGGCCTGCTGGTTCTCGACTGCGAGCTGACGCAGGAACTGG TGGTGTCGACGCATGCGGTCTTCGTGGGGCTGGTGGTCGGGCTGCAGTCG CGCGAAGGCGCGCCGCTGCTGTACTCGGATCAGGCCTATCGCACGCTCGA G
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13908:135..635+

>mRNA_P-wetherbeei_contig13908.1.1 ID=mRNA_P-wetherbeei_contig13908.1.1|Name=mRNA_P-wetherbeei_contig13908.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig13908:135..635+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGATCCCGTCGATATCAAGCAATTCACCACAGCCATGCGCCGCGCGGC
GACCCCGGTTTCGGTCGTCACGACCGAAGGGCCCGGCGGGCGTTTCGGCG
TGACCGTGAGTTCCATCTGCACCGCCTCGGCGGAGCCGCCGCAGGTCCTG
GTGTGCGTGCACCTCGGCGGGCCCACGCCCGTGGCCCTCCGCGCGAACAA
GTGCTTCGCGGTGAACATCCTCGACAGCCGCCACCGCCACGTCGCCGACT
CGTTCGCCGGCCGGATCGAGCGCTGGCGGCAGGACCGGTTTGCCTGCGAT
GCGTGGAACACGATCGCAACCGGTGCGCCCGTGCTGAGCGACGGCCTGCT
GGTTCTCGACTGCGAGCTGACGCAGGAACTGGTGGTGTCGACGCATGCGG
TCTTCGTGGGGCTGGTGGTCGGGCTGCAGTCGCGCGAAGGCGCGCCGCTG
CTGTACTCGGATCAGGCCTATCGCACGCTCGAG
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