mRNA_P-wetherbeei_contig1390.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1390.3.1
Unique NamemRNA_P-wetherbeei_contig1390.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1390.3.1 vs. uniprot
Match: A0A6U5EEF9_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5EEF9_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.410e-14
Identity = 92/323 (28.48%), Postives = 136/323 (42.11%), Query Frame = 2
Query:  710 PNPLRNHVVTRLHHDWSGRMIYLVGTNHFLVDSAQLVLDVIRAVRPDVVVAELDQSRF------DAIVRRLSRVMADATAEESADR-----------TAAGARIKLWPWCSHL--LSRLPMRRPKEAQGLKAAAPKPGVVLEPEKMPGPEDYDEFYNCHGITEGLEFMAAYRGACELRSKYVFGDRDQDAMHRRMADALRADLFESPTADADADALISKSHAERERRAGLQPRYDVPNDLKELREYLVRRTTRAAARAENDIRRRYLPNFYNVLIGERDDFLVRAAV------ESRGLVT-VAVAGLAHLQGVEERLAAKGWR 1600
            P  L +  ++ L  D  G  I LVGT H   +SA LV D+IR VRP+ V  ELD  R       D   ++  R +A    E ++ R             AG  +   P    L   S +     K+   L  AA    V    + M     Y +     G + G EF  A     E+ SK V GDRD      R+++AL    +   T     D+++ K   +    +G   + D+   ++ L+       TR   R+  +  ++ LP  Y  L+ ERD+++            SRG+   VAV G+AHL GVE  L +KGW+
Sbjct:   87 PPRLCDQAISELTLD--GVTIRLVGTAHISDESALLVGDIIRTVRPETVFVELDAKRVGRFLEKDGSGKQGDRTLAPTPVEPTSSRGWGVVRDPVSAPQAGTSVAPAPSTEKLGIFSAIRTGLGKKIASLYRAAEAAAVGSALQSM-----YSQLDKI-GFSSGEEFKMAIETGSEIGSKIVLGDRDVQVTLNRLSEALEIVDWNKLTTMTIDDSIMPKGMGQNSAASGDISKEDLSQVVEALK-------TRENVRSIMNSLKKELPELYTALVAERDEYMANGLDIIGKNGASRGMKNAVAVMGMAHLDGVERYLQSKGWK 394          
BLAST of mRNA_P-wetherbeei_contig1390.3.1 vs. uniprot
Match: A0A6H5K4M4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K4M4_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.830e-13
Identity = 98/366 (26.78%), Postives = 151/366 (41.26%), Query Frame = 2
Query:  536 LIFETESAMQPRKSFILAYALLPVASGAKTAEASHLTFVGA---AAALGTASFSTWKRTIEPNPLRNHVVTRLHHDWSGRMIYLVGTNHFLVDSAQLVLDVIRAVRPDVVVAELDQSRFDAIVR---RLSRVMADATAEESADRTAAGARIKLWPWCSHLLS-RLPMRRPKEAQGLKAAAPKPGVVLEPEKMPGPEDYDEFYNCHGITEGLEFMAAYRGACELRSKYVFGDRDQDAMHRRMADALRADLFESPTADADADALISKSHAERERRAGLQPRYDVPNDLKELREYLVRRTTRAAARAENDIRRRYLPNFYNVLIGERDDFLVRAAVESRGL----VTVAVAGLAHLQGVEERLAAKGWR 1600
            L+ E E+    R+      ALL    GA  + AS      +   AAA GTA          P  L +  V+ L++      ++LVGT H    SA LV +VIR ++P VV+ ELD  R  + ++   +  + +AD T +E A             +   LL  ++P+          AAA    +    E M          +  G++ G EF  A   A    +K + GDRD     RR+++ALR    +  +     +  +     +      +    D+  + + +R+ +                +   P  YN +IGERD  +   AV   GL    VTVAV GLAH+ G+E  L A GW+
Sbjct:   62 LLMELENTQLDRR------ALLRTIGGALASLASASALTASPQQAAAAGTAVGRRPGAKRSPTFLCDDAVSYLYNPTKQSEVWLVGTAHISNSSATLVENVIRQIKPQVVMVELDAQRVGSFMKPSKQGEKTLADGTGKEIAPPAERTRNPFFGAFFKQLLDPKVPVND--RITDFFAAALGKAISKMYESM----------DQKGLSSGQEFTIAINEARACGAKLLLGDRDVRITLRRLSEALRKIDLQKISQSGQMETGLGLEALDGSSVESINSSLDILKNRETMRKVI-------------GFYKEEAPELYNAMIGERDKVM---AVNLMGLDGKQVTVAVVGLAHVDGIEGILMANGWK 393          
BLAST of mRNA_P-wetherbeei_contig1390.3.1 vs. uniprot
Match: C1MLW3_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MLW3_MICPC)

HSP 1 Score: 78.6 bits (192), Expect = 1.610e-12
Identity = 78/287 (27.18%), Postives = 117/287 (40.77%), Query Frame = 2
Query:  758 SGRMIYLVGTNHFLVDSAQLVLDVIRAVRPDVVVAELDQSRFDAIVRRLSRVMADATAEESADRTAAGARIKLWPWCSHLLSRLPMRRPKEAQGLKAAAPKPGVVLEPEKMPGPEDYDEFYNCHGITEGLEFMAAYRGACELRSKYVFGDRDQDAMHRRMADALRADLFESPTADADADALISKSHAERERRAGLQPRYDVPNDLKELREYL----------VRRTTRAAARAENDIRRRYLPNFYNVLIGERDDFLVRAAVESRGLVTVAVAGLAHLQGVEERLAA 1588
            +G  +YL+GT H    SA+ V DVI+AVRPD V  EL + R  +I R + +       ++ A     G   K+  +   L                      G VL      G +   + +  +G+  GLEF  A   A ++ +K V GDRDQ+   RR+ +AL    F          A+ S          G  P   +P DL E    +          + +T RA A     +R  + P     ++ ERD+ +    +      TVAV G+AH+ G+E R  A
Sbjct:    9 TGNEVYLIGTAHVSKKSAEEVRDVIQAVRPDTVFVELCEKRAASIRRSMLQ-------DDGASAPGGGVEDKVKEFLRVL----------------------GCVLGA----GLKSIYQAFRTYGLDPGLEFKVAIEEAEKIGAKLVMGDRDQEVTIRRLREALTMSDF--------LRAMFS---------GGTIPTDHMPPDLAERFSKIDWNDPQAAVEMMKTRRAVAEVTRHLRTDF-PKVAVAMVDERDEMMTNGLLHKCPGRTVAVVGMAHMDGIEARWRA 244          
BLAST of mRNA_P-wetherbeei_contig1390.3.1 vs. uniprot
Match: A0A8J9RGE5_9CHLO (Probable TraB domain-containing protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RGE5_9CHLO)

HSP 1 Score: 77.8 bits (190), Expect = 9.300e-12
Identity = 89/339 (26.25%), Postives = 141/339 (41.59%), Query Frame = 2
Query:  590 YALLPVASGAKTAEASHLTFVGAAAALGTASFSTWKRTIEPNPLRNHVVTRLHHDWSGRMIYLVGTNHFLVDSAQLVLDVIRAVRPDVVVAELDQSRFDAIVRRLSRVMADATAEESADRTAAGARIKLWPWCSHLLSRLPMRRPKEAQGLKAAAPKPGVVLEPEKMPGPEDYDEFYNCHGITEGLEFMAAYRGACELRSKYVFGDRDQDAMHRRMADALRADLFESPTADADADALISKSHAERERRAGLQPRYDVPNDLK-----ELREYLVRRTTRAAARAENDIRRRYLPNFYNVLIGERDDFLVRAAVESRGLVTVAVAGLAHLQGVEERLAAK 1591
            Y L  +   A +A  + L  VG    +   +      T   + + +   T L +  +G  I+LVGT H   +SA+ V ++IR V+P VV+ EL ++R                    A R  A ++++   +   L+  +  +     + L     K G+          + +       G+  GLEF  A   A  LR++ VFGD DQD   RR++++L                L+S          GL P  DV + LK     +L + +     R  ARA  +  R+  P     L  ERD+++V+   +  G V V V GLAHL G+E R  A+
Sbjct:   48 YGLKCLQGAAASAPKTSLAQVGEVQQIWCPAIKQAYSTSASSAVLSETTTLLRNLTNGAEIFLVGTAHVSRNSAEEVRELIRVVKPTVVMVELCENR--------------------ARRLRASSQLQEGDFAKDLVQEVLRQLGAGGRDLPQQFIKMGM----------QGFYRLLKTWGMDPGLEFKVAMEEAELLRARIVFGDADQDRTMRRISESLSL------------QGLLSMVMG-----GGLPPA-DVLDFLKSNGSSKLTDQVEAMKNRKMARAMTEYMRKVNPALAEALTDERDEYMVKCLQKLEGRV-VGVVGLAHLDGIERRWDAE 337          
BLAST of mRNA_P-wetherbeei_contig1390.3.1 vs. uniprot
Match: A0A7S0CDZ2_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CDZ2_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 3.320e-11
Identity = 76/289 (26.30%), Postives = 111/289 (38.41%), Query Frame = 2
Query:  758 SGRMIYLVGTNHFLVDSAQLVLDVIRAVRPDVVVAELDQSRFDAIVRRLSRVMADATAEESADRTAAGARIKLWPWCSHLLSRLPMRRPKEAQGLKAAAPKPGVVLEPEKMPGPEDYDEFYNCHGITEGLEFMAAYRGACELRSKYVFGDRDQDAMHRRMADALRADLFESPTADADADALISKSHAERERRAGLQPRYDVPNDLK-------ELREYLVRRTTRAAARAENDIRRRYLPNFYNVLIGERDDFLVRAAVE--SRGLVTVAVAGLAHLQGVEERLAAKGW 1597
            +GR ++L+GT H    SAQL   V+R   PD V  ELD  R D +    S       +      TA  +  K  P+                 G      K    L  + +    +  +     G+  G EF  A     +L +  V GDRD D   +R+  A+    F+          L+S      E+     P   +    K       E+R  +    T    +A     +R  P  Y  ++ ERD+++ R   E  ++ L TVAV GLAH+ GVE  L A GW
Sbjct:  134 NGRTVHLLGTAHISSVSAQLAGRVVRETSPDAVFVELDAKRVDRVFLPESEANQQLVSNAP---TAVQSNTKKSPF-----------------GFIETIKKAPAALVGKTI---SNMYKKLESDGLNAGEEFSVAVNEGLKLNAAIVLGDRDVDVTLQRLTTAISKTNFKQ---------LLSADSQIEEQMINTLPTETIDTFQKIGSLSSDEMRTMVEILKTNDNVKALMANLKRAAPEIYGAMVAERDEYMARGLNELPNKYLTTVAVMGLAHIDGVERNLMASGW 390          
BLAST of mRNA_P-wetherbeei_contig1390.3.1 vs. uniprot
Match: A0A6V2GKS8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2GKS8_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 6.000e-11
Identity = 81/327 (24.77%), Postives = 134/327 (40.98%), Query Frame = 2
Query:  680 SFSTWKRTIEPNPLRNHVVTRLHHDWSGRMIYLVGTNHFLVDSAQLVLDVIRAVRPDVVVAELDQSRFDA-----IVRRLSRVMADATAEESADRTAAGARIKLWPWCSHLLSRLPMRRPK-EAQGLKAAAPKPGVVLEPEKMPGPEDYDEFYN---CHGITEGLEFMAAYRGACELRSKYVFGDRDQDAMHRRMADAL-RADLFESPTADADADA----LISKSHAERERRAGLQPRYDVPNDLKELREYLVRRTTRAAARAENDIR------RRYLPNFYNVLIGERDDFLVRAAVESRGLV-TVAVAGLAHLQGVEERLAAKGW 1597
            S S W +T+ PN  +             R+IYL+GT H    SA L  +++R+++PD V  ELD  R        +    S  ++ +T +    R  A                     P  EAQ  ++     G +L+       +     Y      G   G EF+ A +    + S+ V GDRD D   RR+ +AL + DL +  ++D+D +     L+  S +       + P      D + L  Y+         +A++++R      +   P  Y  ++ ERD+++ +   +      TVAV G+AH+ GVE  L   GW
Sbjct:  142 SVSIWTKTL-PNTQQE------------RIIYLLGTAHISTSSADLAGELVRSIKPDAVFVELDAKRVGGGGNVRVEPVPSNSLSSSTDDTPMPRRLAPXXXXXXXXXXXXXXXXXXXXPAAEAQSKRSPFDIKGKILDAGSRMVGDSIKGLYKKLGAEGFNPGEEFVVAVKEGLAVGSQIVLGDRDVDVTLRRLTEALSKTDLKKLTSSDSDLEKSMQELLPSSSSGSSTGKPVDP---TAVDKESLARYVE------VVKAKDNVRLIMKTLQDAAPELYQAMVAERDEYMAKGLNKIDMFPSTVAVMGIAHVDGVERYLGGNGW 446          
BLAST of mRNA_P-wetherbeei_contig1390.3.1 vs. uniprot
Match: C1FH60_MICCC (Uncharacterized protein n=2 Tax=Micromonas TaxID=38832 RepID=C1FH60_MICCC)

HSP 1 Score: 69.7 bits (169), Expect = 1.640e-9
Identity = 74/276 (26.81%), Postives = 111/276 (40.22%), Query Frame = 2
Query:  758 SGRMIYLVGTNHFLVDSAQLVLDVIRAVRPDVVVAELDQSRFDAIVRRLSRVMADATAEESADRTAAGARIKLWPWCSHLLSRLPMRRPKEAQGLKAAAPKPGVVLEPEKMPGPEDYDEFYNCHGITEGLEFMAAYRGACELRSKYVFGDRDQDAMHRRMADALRA-DLFESPTADADADAL-ISKSHAERERRAGLQPRYDVPNDLKELREYLVRRTTRAAARAENDIRRRYLPNFYNVLIGERDDFLVRAAVESRGLVTVAVAGLAHLQGVEER 1579
            +G  +YLVGT H    SA  V +VIR+VRPD V  EL  +R  A+ R +S    +    E                        P+R+      L +A   PG + E     G +     +   G+  G EF      +  + ++ V GDR Q+   R + DA+   D+    T         +     ER +R      ++ P    EL +      TR A RA     RR  P   + ++ +RDD +    +      TVAV G+AH+ G+E R
Sbjct:    9 NGDEVYLVGTAHISRKSADEVRNVIRSVRPDTVFLELCDARAAAMRRSMSGKSDEGGIPE------------------------PLRQ------LLSALGAPGDLGEKMLGAGLKTVYNMFRMSGMDPGKEFKVGIEESDRIGARLVLGDRSQELTIRALRDAITLPDILRMITGGGSMQWRDVDPQLVERFKRVD----WNDPESAVELLK------TREAVRALTGQMRREFPRVASAMLDQRDDHMTDGLLNKCSGRTVAVVGMAHMDGIESR 244          
BLAST of mRNA_P-wetherbeei_contig1390.3.1 vs. uniprot
Match: A0A7S4LCG8_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LCG8_9EUGL)

HSP 1 Score: 71.2 bits (173), Expect = 1.950e-9
Identity = 75/284 (26.41%), Postives = 116/284 (40.85%), Query Frame = 2
Query:  758 SGRMIYLVGTNHFLVDSAQLVLDVIRAVRPDVVVAELDQSRFDAIVRRLSRVMADATAEESADRTAAGARIKLWPWCSHLLSRLPMRRPKEAQGLKAAAPKPGVVLEPEKMPGPEDYDEFYNCHGITEGLEFMAAYRGACELRSKYVFGDRDQDAMHRRMADALRAD----LFESPTADAD-----ADALISKSHAERERRAGLQPRYDVPNDLKELREYLVRRTTRAAARAENDIRRRYLPNFYNVLIGERDDFLVRAAVESRGLVTVAVAGLAHLQGVEERL 1582
            +GR ++L+GT H    SA+LV +V+R VRP+ V+ ELD  R   +    S          ++   A  AR  L+        RL   +     GL AA                  +    N  G   G EF+ A + A  L +  V GD+  D   +R+  AL       +F  P +  +     A AL S S AE      L    ++     ++RE +              + ++ LP  Y  L+ ERD ++  +   S G   V V G+AH+ G+E++L
Sbjct:  158 NGREVFLIGTAHISNISAELVKNVVREVRPETVMLELDAGRIK-MAPDGSGPQEGVVGSRASLSLAERARRDLFTGSKPFGVRLQKLQADLIGGLLAA------------------FYSALNQMGFDSGQEFIVALQEAKALNANIVLGDQPIDITLQRLQQALAVSDLSKMFSPPDSMNEVEIEVAQALNSGSKAE------LAGAVELLKQRSQVRELVA-------------VMKQQLPEVYQALLAERDSYMANSLRNSPGQRIVGVVGIAHMDGIEKKL 403          
BLAST of mRNA_P-wetherbeei_contig1390.3.1 vs. uniprot
Match: A0A7S2Y0R5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0R5_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.830e-9
Identity = 81/309 (26.21%), Postives = 131/309 (42.39%), Query Frame = 2
Query:  713 NPLRNHVVTRLHHDWSGRMIYLVGTNHFLVDSAQLVLDVIRAVRPDVVVAELDQSRFDAIVRRLSRVMADATAE-ESADRTAAGARIKLWPWCSHLLSRLPMRRPKEAQGLKAAAPKPGVVLEPEKMPGPEDYDEFYNCHGITEGLEFMAAYRGACELRSKYVFGDRDQDAMHRRMADALR-ADLFESPTADADA--DALISKSHAERERRAG----LQPRYDVPNDLKELREYLVRRTTRAAARAENDIRRRYLPNFYNVLIGERDDFLVRAA--VESRGLVTVAVAGLAHLQGVEERLAAKGWRKES 1609
            +P     VT L    SG  +Y++GT H    SA LV +VI+ V+P  V+ ELD SR      +L++   DA  + ESAD   AG++  +          +    P   + +   A   G V+            +  +  G + G EF  A   A ++ +  + GDR      +R+A A+  +DL +  + D  +   AL S ++A+ +  A     L+ R +V   +K L + +                    P  Y  L+ ERD+++      +        AV G+AH  G+E+RL   GW K S
Sbjct:   62 SPTCEQAVTHLKK--SGTDMYIIGTAHISSASALLVKEVIQQVKPGYVMLELDPSRV-----KLAKRNQDANTQFESAD---AGSKKGMNTGLFSEAFSVTQSTPISERLVSFTAGLVGTVIS--------TLYKSLDKRGFSSGEEFKVAIEEAGKINASVILGDRPAKETLKRLAQAISVSDLSQKSSGDMSSIEAALASLNYADNQALAETVEILKERENVKTMMKLLSDQV--------------------PELYKALVTERDEYMAAGLNKLSDAQKPVCAVVGIAHEDGIEQRLINNGWEKVS 332          
BLAST of mRNA_P-wetherbeei_contig1390.3.1 vs. uniprot
Match: A0A7S0CEN7_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CEN7_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 9.040e-8
Identity = 48/165 (29.09%), Postives = 70/165 (42.42%), Query Frame = 2
Query: 1130 GITEGLEFMAAYRGACELRSKYVFGDRDQDAMHRRMADALRADLFESPTADADADALISKSHAERERRAGLQPRYDVPNDLK-------ELREYLVRRTTRAAARAENDIRRRYLPNFYNVLIGERDDFLVRAAVE--SRGLVTVAVAGLAHLQGVEERLAAKGW 1597
            G+  G EF  A     +L +  V GDRD D   +R+  A+    F+          L+S      E+     P   +    K       E+R  +    T    +A     +R  P  Y  ++ ERD+++ R   E  ++ L TVAV GLAH+ GVE  L A GW
Sbjct:   44 GLNAGEEFSVAVNEGLKLNAAIVLGDRDVDVTLQRLTTAISKTNFKQ---------LLSADSQIEEQMINTLPTETIDTFQKIGSLSSDEMRTMVEILKTNDNVKALMANLKRAAPEIYGAMVAERDEYMARGLNELPNKYLTTVAVMGLAHIDGVERNLMASGW 199          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1390.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6U5EEF9_9STRA1.410e-1428.48Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A6H5K4M4_9PHAE1.830e-1326.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
C1MLW3_MICPC1.610e-1227.18Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A8J9RGE5_9CHLO9.300e-1226.25Probable TraB domain-containing protein n=1 Tax=Co... [more]
A0A7S0CDZ2_9STRA3.320e-1126.30Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A6V2GKS8_9STRA6.000e-1124.77Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
C1FH60_MICCC1.640e-926.81Uncharacterized protein n=2 Tax=Micromonas TaxID=3... [more]
A0A7S4LCG8_9EUGL1.950e-926.41Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S2Y0R5_9STRA2.830e-926.21Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0CEN7_9STRA9.040e-829.09Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1390contigP-wetherbeei_contig1390:2835..5325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FHB1
PFAMsTraB
Model size1922
Max annot lvl2759|Eukaryota
KEGG rclassRC00034,RC00767,RC02141,RC02755
KEGG koko:K03781
KEGG ReactionR00009,R00602,R02670
KEGG Pathwayko00380,ko00630,ko01110,ko01130,ko01200,ko04011,ko04016,ko04068,ko04146,ko04211,ko04212,ko04213,ko05014,map00380,map00630,map01110,map01130,map01200,map04011,map04016,map04068,map04146,map04211,map04212,map04213,map05014
KEGG ModuleM00532
Hectar predicted targeting categorysignal peptide
Exons3
Evalue4.78e-14
EggNOG OGsCOG1916@1|root,KOG2860@2759|Eukaryota
EC1.11.1.6
DescriptionTraB family
Cds size1086
COG categoryKLT
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186001.1816182-UTR-P-wetherbeei_contig1390:2834..33931683186001.1816182-UTR-P-wetherbeei_contig1390:2834..3393Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1390 2835..3393 +
1683186001.2223372-UTR-P-wetherbeei_contig1390:5048..53251683186001.2223372-UTR-P-wetherbeei_contig1390:5048..5325Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1390 5049..5325 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186001.196518-CDS-P-wetherbeei_contig1390:3393..36161683186001.196518-CDS-P-wetherbeei_contig1390:3393..3616Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1390 3394..3616 +
1683186001.2047894-CDS-P-wetherbeei_contig1390:4040..44071683186001.2047894-CDS-P-wetherbeei_contig1390:4040..4407Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1390 4041..4407 +
1683186001.213216-CDS-P-wetherbeei_contig1390:4552..50481683186001.213216-CDS-P-wetherbeei_contig1390:4552..5048Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1390 4553..5048 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1390.3.1prot_P-wetherbeei_contig1390.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1390 3394..5048 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1390.3.1

>prot_P-wetherbeei_contig1390.3.1 ID=prot_P-wetherbeei_contig1390.3.1|Name=mRNA_P-wetherbeei_contig1390.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=362bp
MQPRKSFILAYALLPVASGAKTAEASHLTFVGAAAALGTASFSTWKRTIE
PNPLRNHVVTRLHHDWSGRMIYLVGTNHFLVDSAQLVLDVIRAVRPDVVV
AELDQSRFDAIVRRLSRVMADATAEESADRTAAGARIKLWPWCSHLLSRL
PMRRPKEAQGLKAAAPKPGVVLEPEKMPGPEDYDEFYNCHGITEGLEFMA
AYRGACELRSKYVFGDRDQDAMHRRMADALRADLFESPTADADADALISK
SHAERERRAGLQPRYDVPNDLKELREYLVRRTTRAAARAENDIRRRYLPN
FYNVLIGERDDFLVRAAVESRGLVTVAVAGLAHLQGVEERLAAKGWRKES
RWPVFTGFLEW*
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mRNA from alignment at P-wetherbeei_contig1390:2835..5325+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1390.3.1 ID=mRNA_P-wetherbeei_contig1390.3.1|Name=mRNA_P-wetherbeei_contig1390.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2491bp|location=Sequence derived from alignment at P-wetherbeei_contig1390:2835..5325+ (Phaeothamnion wetherbeei SAG_119_79)
CACCTACGCGCTTACTGCTGTCGGCGGTGAAACAATTTCTCACAGTAGGA CGCGCGACATGCTCCCGTCAATCCGCGTTTACGCTCAGTCCGACGCTCGC TGCATCGCACCCCTCCCACTCTTAAGCAAACGAAAAACAGATTTGCGGTG GCCGCGGAGGAAGCGTCGCGGATGAAGGCGAAGATCGTGCTGAGAGACCA AGACTTCAGAATCACCAGGCCATCAGTGACGTTCTGCTGAAACAAGACCA AAACTCCTAATCCCAACAAATGTCGTCGAGAACTGCCTGTTGTCCCCCAG ACCAGAACAAAATGATGCGCGAAGACGCGGACGTGGGTAACAAGGCCTTT AGTCGAAGTCTACCCTCCAGACTGCGCAAACCCTCTCGTTTCACCCGTTT GCATTCTTGCGACCTCTGGCGTGCAGCAACCCCAGGCAATGCATTTGTAG AGCGTGGTGTGATGGTGCCGGCAACCTCATTCCCCAAAAACAGACTCCGG GAGAAATTCATGCGAGGGCAAGCAAAAGTATCTTTCTCATTTTCGAAACG GAGAGTGCGATGCAACCCAGGAAGAGCTTTATCCTTGCTTACGCATTGCT TCCAGTTGCGTCCGGAGCGAAAACAGCGGAAGCTTCTCACCTCACGTTCG TCGGCGCAGCAGCCGCACTGGGAACTGCCTCCTTCAGTACGTGGAAGCGT ACGATTGAGCCAAACCCCTTGCGCAATCATGTTGTGACGCGTCTTCACCA CGATTGGAGCGGCCGAATGATATACCTCGTCGGTGAGCGGCGAAGAAGTA CCCGGAGAAGCGGGGGTTGACAAGGGTTGCCTAGGTTTGCGGTCTACTGC TTTATTTCATGTGCTGTTCCGTTCGTTTCGCCAGTTTCCATACTTGGCGG AGAGACGTGAGAAGAGCTGTCTTCTCCGCCTTGTGCAAAGCATGGCTCAT CTCGCACCGACAAAACTATGGCGGTTCTATAGGTAAGCTGCTTGTAATCA CGCTGACGCCACCTGCTGAAAGGGTGCAGGTGGCGCTTAGGGTGCGTACT CTCAGCATTCCCCTCACCGTATTTCCTCCTTTGTTTTTTCAACTTTGTGG GCGTTCCTAGACCTGCCGCCCGCCCATTTCAAGCAAAGAGCGACCATTCT GTTCGACTCCCATTCTTGTTCGCTTTTGCCCGCCCTGCCATCTTTCCGTT CCCCAGGAACGAATCACTTCCTGGTGGATTCGGCGCAGCTCGTGCTCGAC GTCATCCGCGCCGTGCGGCCCGACGTCGTTGTGGCGGAGCTCGACCAGTC ACGCTTTGATGCCATTGTAAGGCGGCTTTCGAGGGTGATGGCAGATGCGA CCGCGGAAGAGTCAGCGGATCGGACGGCGGCCGGGGCGAGGATAAAGCTT TGGCCGTGGTGTAGCCATCTCCTTTCCCGGCTGCCGATGCGAAGACCAAA AGAGGCGCAAGGGCTTAAAGCGGCGGCGCCAAAACCTGGAGTAGTGCTGG AACCTGAAAAAATGCCGGGACCTGAGGACTACGACGAATTCTACAATTGC CATGGCATCACAGAAGGGCTGGAGTGAGTCGACCGGCTCAAGCAGGCCTG CTTCGCTGTCTTCCTTTTGATGGCTGCTATCGGCTTTCCTTCCTTGTCAT TTTCGCCGCATTAGCCTCATATTAGCTCGCTATCTCTCATCGCGTCGCCG CCTGCTGCCCATTCATAGGTTTATGGCTGCCTATCGGGGTGCATGTGAAC TGCGCTCCAAATATGTATTCGGAGACCGGGATCAAGACGCGATGCACCGT CGGATGGCCGATGCACTGCGGGCCGACCTCTTTGAATCGCCGACCGCCGA CGCAGACGCGGACGCTCTTATTTCCAAATCCCACGCCGAACGGGAACGCA GGGCGGGGCTCCAGCCGCGCTACGACGTTCCGAACGATTTGAAAGAGCTG AGGGAATATCTGGTTCGGAGGACGACGCGGGCGGCGGCGCGCGCTGAAAA CGACATTAGGCGCCGCTATCTTCCCAACTTTTACAATGTGCTCATCGGCG AAAGAGACGACTTTTTGGTGAGGGCGGCGGTAGAGAGCCGCGGCTTAGTT ACGGTCGCCGTGGCCGGCCTCGCTCACCTTCAAGGTGTGGAAGAGCGGCT CGCGGCAAAAGGGTGGCGGAAGGAATCTCGGTGGCCGGTTTTCACTGGCT TTCTCGAGTGGTGATTGCCATCCCATTGCGGGAAGACAGATTCCATGGTA GCATTGTAAGGCTTTTTCTAGCGGATGGTTTCGACACGCGGAAAGGGGAT GGCGCTGGTTGTAAAGATCGGACTGGTTTATGAAGGGACGGAAAGACGTG CAGCGCCGATCGTAAATAATGTACTTGAAATTGAATGGATGGTGCAGCGG CAAAGGACGTCTTTTTCGGGGGGGGCGACCTGCGGCTTCATGTAAATGGC CTAGATAATACAAGGAAGCAGAAAGGTCTACCAAAAGAGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1390:2835..5325+

>mRNA_P-wetherbeei_contig1390.3.1 ID=mRNA_P-wetherbeei_contig1390.3.1|Name=mRNA_P-wetherbeei_contig1390.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1086bp|location=Sequence derived from alignment at P-wetherbeei_contig1390:2835..5325+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAACCCAGGAAGAGCTTTATCCTTGCTTACGCATTGCTTCCAGTTGC
GTCCGGAGCGAAAACAGCGGAAGCTTCTCACCTCACGTTCGTCGGCGCAG
CAGCCGCACTGGGAACTGCCTCCTTCAGTACGTGGAAGCGTACGATTGAG
CCAAACCCCTTGCGCAATCATGTTGTGACGCGTCTTCACCACGATTGGAG
CGGCCGAATGATATACCTCGTCGGAACGAATCACTTCCTGGTGGATTCGG
CGCAGCTCGTGCTCGACGTCATCCGCGCCGTGCGGCCCGACGTCGTTGTG
GCGGAGCTCGACCAGTCACGCTTTGATGCCATTGTAAGGCGGCTTTCGAG
GGTGATGGCAGATGCGACCGCGGAAGAGTCAGCGGATCGGACGGCGGCCG
GGGCGAGGATAAAGCTTTGGCCGTGGTGTAGCCATCTCCTTTCCCGGCTG
CCGATGCGAAGACCAAAAGAGGCGCAAGGGCTTAAAGCGGCGGCGCCAAA
ACCTGGAGTAGTGCTGGAACCTGAAAAAATGCCGGGACCTGAGGACTACG
ACGAATTCTACAATTGCCATGGCATCACAGAAGGGCTGGAGTTTATGGCT
GCCTATCGGGGTGCATGTGAACTGCGCTCCAAATATGTATTCGGAGACCG
GGATCAAGACGCGATGCACCGTCGGATGGCCGATGCACTGCGGGCCGACC
TCTTTGAATCGCCGACCGCCGACGCAGACGCGGACGCTCTTATTTCCAAA
TCCCACGCCGAACGGGAACGCAGGGCGGGGCTCCAGCCGCGCTACGACGT
TCCGAACGATTTGAAAGAGCTGAGGGAATATCTGGTTCGGAGGACGACGC
GGGCGGCGGCGCGCGCTGAAAACGACATTAGGCGCCGCTATCTTCCCAAC
TTTTACAATGTGCTCATCGGCGAAAGAGACGACTTTTTGGTGAGGGCGGC
GGTAGAGAGCCGCGGCTTAGTTACGGTCGCCGTGGCCGGCCTCGCTCACC
TTCAAGGTGTGGAAGAGCGGCTCGCGGCAAAAGGGTGGCGGAAGGAATCT
CGGTGGCCGGTTTTCACTGGCTTTCTCGAGTGGTGA
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