mRNA_P-wetherbeei_contig13873.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13873.1.1
Unique NamemRNA_P-wetherbeei_contig13873.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13873.1.1 vs. uniprot
Match: A0A537P649_9PROT (Uncharacterized protein n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A537P649_9PROT)

HSP 1 Score: 291 bits (744), Expect = 8.420e-97
Identity = 137/222 (61.71%), Postives = 176/222 (79.28%), Query Frame = 1
Query:   25 REMAVQLLATVMIPVSVAGTGLYYTRWQQNLNDLKTMIDLVSDQNPERRKYGVAMFEYLLKNDKVPVEFVAAQLSYANSSADKELLPLMEQALLKASAENTKVADTFRQALERMPSRIFVYAMNDKQRACMSVLMAKVKDTDRTNIVIPGFSRATWNGEGHELRVFRSSDVERANSLVKIFNDVGLPVILKDLSDVEGSAAKARANTFELWFGQAKLPASCG 690
            R++ VQ+LATVMIP++VAGTGLYYTRWQQNLNDLKTMIDLVSD N E+RK+G+AM EYLLKNDKVPVEFVAAQL YANSS+DK++LPLME AL+KAS EN  VA+TFR+ALER+PSR+FV+ + D+QRAC+S ++  +KD DR  + +P  ++  W+G+ HELRV + SD+ER   +  +F  +GL + + +L+ +   A K R NTFELWFG A LP  CG
Sbjct:    2 RDIMVQVLATVMIPLTVAGTGLYYTRWQQNLNDLKTMIDLVSDDNSEKRKFGIAMLEYLLKNDKVPVEFVAAQLDYANSSSDKQMLPLMESALMKASDENPAVAETFRKALERLPSRLFVHVVTDQQRACISTMLLSLKDADRAQVSVPLIAQVNWDGKQHELRVLKDSDMERGQGIANMFASLGLELKVVNLTTIWDGAKKVRPNTFELWFGDAPLPTVCG 223          
BLAST of mRNA_P-wetherbeei_contig13873.1.1 vs. uniprot
Match: A0A2S9QGF1_9HYPH (Uncharacterized protein n=3 Tax=Labrys TaxID=204476 RepID=A0A2S9QGF1_9HYPH)

HSP 1 Score: 273 bits (697), Expect = 1.210e-89
Identity = 130/224 (58.04%), Postives = 167/224 (74.55%), Query Frame = 1
Query:   16 RPWREMAVQLLATVMIPVSVAGTGLYYTRWQQNLNDLKTMIDLVSDQNPERRKYGVAMFEYLLKNDKVPVEFVAAQLSYANSSADKELLPLMEQALLKASAENTKVADTFRQALERMPSRIFVYAMNDKQRACMSVLMAKVKDTDRTNIVIPGFSRATWNGEGHELRVFRSSDVERANSLVKIFNDVGLPVILKDLSDVEGSAAKARANTFELWFGQAKLPASC 687
            RPWRE+  QLL+T +IP++VAG G YYTRWQQNL DL+TMIDL++D  PE+RKYGVAMFEYLLKNDKVPVEF+ AQL YANSS+D++LLPL+E A+ KAS  N  V   + +A  R+PSRIFV+A+ND QR C  +L+ ++KD D+  I  P    A W+GE HELR F++SD +RA++L ++F  VGL +  KDLS     A  +R NTFE+WFG   LPA+C
Sbjct:    5 RPWREILPQLLSTALIPLTVAGIGWYYTRWQQNLADLRTMIDLMTDAAPEKRKYGVAMFEYLLKNDKVPVEFITAQLDYANSSSDRDLLPLLENAVQKASIVNNSVKSAYEEATARLPSRIFVHALNDAQRPCAGILLDEMKDGDKAAITFPSVILAKWSGEAHELRYFKTSDRKRADNLAELFAAVGLQLTTKDLSTSWSGARDSRPNTFEIWFGNPALPANC 228          
BLAST of mRNA_P-wetherbeei_contig13873.1.1 vs. uniprot
Match: A0A2W2BQJ1_9HYPH (Uncharacterized protein n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=A0A2W2BQJ1_9HYPH)

HSP 1 Score: 260 bits (665), Expect = 1.650e-84
Identity = 119/224 (53.12%), Postives = 164/224 (73.21%), Query Frame = 1
Query:   16 RPWREMAVQLLATVMIPVSVAGTGLYYTRWQQNLNDLKTMIDLVSDQNPERRKYGVAMFEYLLKNDKVPVEFVAAQLSYANSSADKELLPLMEQALLKASAENTKVADTFRQALERMPSRIFVYAMNDKQRACMSVLMAKVKDTDRTNIVIPGFSRATWNGEGHELRVFRSSDVERANSLVKIFNDVGLPVILKDLSDVEGSAAKARANTFELWFGQAKLPASC 687
            R WR++ +Q+ AT+MIP+++AG GLYYTRWQQN+NDLKTMIDLVSD  PER+KYG+AMFEYLLKNDKVPVEFVAAQL YAN+++D +LLP ME+AL  A+  NT V   F++A+ R+PSR+FV  +N++QRAC S L+  +KDTD   I +P  + A W+G+ +E+R     DV +A ++     ++G  + + +L+++   A K R NTFE+WFG   LP  C
Sbjct:   15 RAWRDIMLQMTATIMIPLTIAGMGLYYTRWQQNVNDLKTMIDLVSDDKPERQKYGIAMFEYLLKNDKVPVEFVAAQLDYANNASDPQLLPAMERALTAAAQTNTNVQAVFKEAVGRLPSRVFVNVLNEQQRACFSKLLTGLKDTDGAAITVPSIAMAKWDGKVNEIRAMNDDDVPKAEAIANWLRNIGFDIQVVNLTNIWSGAKKVRPNTFEIWFGDKDLPPIC 238          
BLAST of mRNA_P-wetherbeei_contig13873.1.1 vs. uniprot
Match: A0A6I0EGW9_HYPSQ (Uncharacterized protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A6I0EGW9_HYPSQ)

HSP 1 Score: 201 bits (512), Expect = 1.500e-61
Identity = 97/223 (43.50%), Postives = 147/223 (65.92%), Query Frame = 1
Query:   22 WREMAVQLLATVMIPVSVAGTGLYYTRWQQNLNDLKTMIDLVSDQNPERRKYGVAMFEYLLKNDKVPVEFVAAQLSYANSSADKELLPLMEQALLKASAENTKVADTFRQALERMPSRIFVYAMNDKQRACMSVLMAKVKDTDRTNIVIPGFSRAT-WNGEGHELRVFRSSDVERANSLVKIFNDVGLPVILKDLSDVEGSAAKARANTFELWFGQAKLPASC 687
            W +   ++L+ V++P++VAG G Y+TRWQQN+NDLK+MIDLV+D++PE++KYG+AMFEYL KN KVPVEF++AQ+ YA ++ + ELLP++E A+  A+ EN+ VA+ +R ALER P+R+F++  ND    C+  L    KD D+  +  P   +   +     ELR F + D +RA  +  +F  +GL + +KD+S    +   A  N++ELWF    LP  C
Sbjct:    9 WWDAFFKMLSIVLVPLTVAGMGWYWTRWQQNVNDLKSMIDLVTDKSPEKQKYGIAMFEYLAKNGKVPVEFLSAQIDYATTAENHELLPMLEVAIQAAAKENSDVAEAYRVALERRPARVFIHVPNDDVYGCLVRLREAFKDADKAAVRFPAVRKYQGYANSNQELRFFHAEDEQRAKQIATLFRTLGLELSVKDISRTSWARTNA-PNSYELWFNGNPLPRIC 230          
BLAST of mRNA_P-wetherbeei_contig13873.1.1 vs. uniprot
Match: A0A7Y4Z768_9BACT (Uncharacterized protein n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A7Y4Z768_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 7.640e-5
Identity = 33/130 (25.38%), Postives = 60/130 (46.15%), Query Frame = 1
Query:   28 EMAVQLLATVMIPVSVAGTGLYYTRWQQNLNDLK-------TMIDLVSDQNPERRKYGVAMFEYLLKNDKVPVEFV----------------AAQLSYANSSADKELLPLMEQALLKASAENTKVADTFR 348
            E+ +  +A +++P+S+A  G ++TR ++  ++ K       T +D +S  N +++KY +    YL  N K+P E +                AA L       DKE L L+++ LL       +  + FR
Sbjct:    8 ELLINAMAGILVPISIAFVGYWFTRQKEKSDEQKNAIDTFSTYLDALSSDNQQKQKYALIALHYLKLNKKIPKELMDIVDVFASNTNLEVASAAMLVDMAKDIDKEDLSLLQELLLPVKIHLDRTKNAFR 137          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13873.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A537P649_9PROT8.420e-9761.71Uncharacterized protein n=3 Tax=Alphaproteobacteri... [more]
A0A2S9QGF1_9HYPH1.210e-8958.04Uncharacterized protein n=3 Tax=Labrys TaxID=20447... [more]
A0A2W2BQJ1_9HYPH1.650e-8453.13Uncharacterized protein n=1 Tax=Aestuariivirga lit... [more]
A0A6I0EGW9_HYPSQ1.500e-6143.50Uncharacterized protein n=1 Tax=Hyphomicrobium sp.... [more]
A0A7Y4Z768_9BACT7.640e-525.38Uncharacterized protein n=1 Tax=Bacteroidales bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13873contigP-wetherbeei_contig13873:474..1169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size696
Hectar predicted targeting categorysignal peptide
Exons1
Cds size696
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186000.100946-CDS-P-wetherbeei_contig13873:473..11691683186000.100946-CDS-P-wetherbeei_contig13873:473..1169Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13873 474..1169 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13873.1.1prot_P-wetherbeei_contig13873.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13873 474..1169 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13873.1.1

>prot_P-wetherbeei_contig13873.1.1 ID=prot_P-wetherbeei_contig13873.1.1|Name=mRNA_P-wetherbeei_contig13873.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=232bp
MTTTVRPWREMAVQLLATVMIPVSVAGTGLYYTRWQQNLNDLKTMIDLVS
DQNPERRKYGVAMFEYLLKNDKVPVEFVAAQLSYANSSADKELLPLMEQA
LLKASAENTKVADTFRQALERMPSRIFVYAMNDKQRACMSVLMAKVKDTD
RTNIVIPGFSRATWNGEGHELRVFRSSDVERANSLVKIFNDVGLPVILKD
LSDVEGSAAKARANTFELWFGQAKLPASCGV*
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mRNA from alignment at P-wetherbeei_contig13873:474..1169+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13873.1.1 ID=mRNA_P-wetherbeei_contig13873.1.1|Name=mRNA_P-wetherbeei_contig13873.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=696bp|location=Sequence derived from alignment at P-wetherbeei_contig13873:474..1169+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGACAACGGTTAGGCCTTGGCGTGAAATGGCGGTGCAGCTCCTGGC GACCGTGATGATTCCTGTTTCGGTGGCGGGCACCGGGCTTTATTACACGC GCTGGCAGCAAAACCTGAACGACCTCAAAACCATGATTGACCTGGTCAGC GACCAGAACCCGGAACGGCGCAAATATGGCGTGGCCATGTTCGAGTATTT GTTGAAGAACGACAAGGTGCCGGTGGAATTTGTGGCGGCGCAATTGTCTT ACGCAAATTCCTCGGCCGACAAGGAATTGCTGCCATTGATGGAGCAAGCG CTTCTCAAAGCCTCGGCTGAGAACACGAAGGTGGCTGATACCTTCCGCCA GGCGCTGGAGCGGATGCCGAGCCGCATCTTCGTCTATGCGATGAACGACA AGCAGCGGGCCTGCATGAGCGTGCTGATGGCCAAGGTGAAGGACACGGAC CGCACCAATATTGTTATTCCCGGTTTCTCGCGGGCCACGTGGAATGGAGA AGGCCATGAACTTCGTGTCTTCCGCTCCTCGGACGTCGAACGCGCCAACA GTCTGGTAAAGATATTCAATGATGTGGGCTTGCCTGTAATCCTGAAGGAT CTCTCGGACGTTGAAGGCAGTGCGGCCAAGGCGCGGGCCAATACTTTTGA GCTGTGGTTCGGGCAGGCAAAACTGCCGGCGTCCTGCGGAGTATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13873:474..1169+

>mRNA_P-wetherbeei_contig13873.1.1 ID=mRNA_P-wetherbeei_contig13873.1.1|Name=mRNA_P-wetherbeei_contig13873.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=696bp|location=Sequence derived from alignment at P-wetherbeei_contig13873:474..1169+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGACAACGGTTAGGCCTTGGCGTGAAATGGCGGTGCAGCTCCTGGC
GACCGTGATGATTCCTGTTTCGGTGGCGGGCACCGGGCTTTATTACACGC
GCTGGCAGCAAAACCTGAACGACCTCAAAACCATGATTGACCTGGTCAGC
GACCAGAACCCGGAACGGCGCAAATATGGCGTGGCCATGTTCGAGTATTT
GTTGAAGAACGACAAGGTGCCGGTGGAATTTGTGGCGGCGCAATTGTCTT
ACGCAAATTCCTCGGCCGACAAGGAATTGCTGCCATTGATGGAGCAAGCG
CTTCTCAAAGCCTCGGCTGAGAACACGAAGGTGGCTGATACCTTCCGCCA
GGCGCTGGAGCGGATGCCGAGCCGCATCTTCGTCTATGCGATGAACGACA
AGCAGCGGGCCTGCATGAGCGTGCTGATGGCCAAGGTGAAGGACACGGAC
CGCACCAATATTGTTATTCCCGGTTTCTCGCGGGCCACGTGGAATGGAGA
AGGCCATGAACTTCGTGTCTTCCGCTCCTCGGACGTCGAACGCGCCAACA
GTCTGGTAAAGATATTCAATGATGTGGGCTTGCCTGTAATCCTGAAGGAT
CTCTCGGACGTTGAAGGCAGTGCGGCCAAGGCGCGGGCCAATACTTTTGA
GCTGTGGTTCGGGCAGGCAAAACTGCCGGCGTCCTGCGGAGTATAG
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