mRNA_P-wetherbeei_contig1387.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1387.3.1
Unique NamemRNA_P-wetherbeei_contig1387.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1387.3.1 vs. uniprot
Match: A0A836CAY5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAY5_9STRA)

HSP 1 Score: 127 bits (319), Expect = 2.770e-32
Identity = 81/198 (40.91%), Postives = 112/198 (56.57%), Query Frame = 1
Query:  133 ILVCTNTSCRKNGAQATLDMFQDLAPDDIEVEATGCHGECGNGPNVHVLPADAEYKNVFKPASAEAILSVDFGHDVPADVVSAYKEKMYGDQDLKRGAFDAALKRYEAALAFEALQGRGKALGSVMLSKSDALSKHGARRRDPTMLMAAVTAARAAVAALP---PGELRPRLRLADSLAAAGNVAAAIMELEEAAADL 717
            + VC +  C+K G+ AT D+F+  APD +EVE +GCHG+CG+GPN+  + +   Y  V+KPA+A AIL  + G  VPA +++AYKEKM GDQDL+ G +  +L + +AALA   L    +AL S  LS+S+AL +  A   D                      P      LRL D+L AAG VA A+  L+E  A L
Sbjct:    8 VYVCVSKCCKKLGSPATHDLFRAFAPDGVEVEESGCHGQCGSGPNL--VASGTLYTGVYKPATAAAILEKECGAAVPAALITAYKEKMRGDQDLRDGRYAKSLTQIDAALASGHLDAFPEALCSAWLSRSEALHRQAAAATDXXXXXXXXXXXXXXXXXXXXXAPARRAAWLRLCDALDAAGAVAEALESLQEMEAAL 203          
BLAST of mRNA_P-wetherbeei_contig1387.3.1 vs. uniprot
Match: A0A7S2C305_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C305_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.280e-13
Identity = 41/122 (33.61%), Postives = 64/122 (52.46%), Query Frame = 1
Query:  100 AIAPGTAIVRKILVCTNTSCRKNGAQATLDMFQDLAPDD-IEVEATGCHGECGNGPNVHVLPADAEYKNVFKPASAEAILSVDFGHDVPADVVSAYKEKMYGDQDLKRGAFDAALKRYEAAL 462
            A+  G   +  +  CT+  CR  G+  T  MF DL  +  ++   TGC   C  GPN+    A   Y ++ K ++A A+LS++FG D+P  VV AY E   G++ L+    D A+  ++ AL
Sbjct:   23 ALVNGPKKLHSVFTCTSKDCRSRGSLDTKQMFDDLTSNTAVDSRTTGCSSRCNCGPNIETS-AGKRYSDLTKASTAAAVLSIEFGLDIPDSVVDAYTEFQEGNRFLQSENLDDAIAAFKRAL 143          
BLAST of mRNA_P-wetherbeei_contig1387.3.1 vs. uniprot
Match: A0A2V0NLM2_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NLM2_9CHLO)

HSP 1 Score: 78.6 bits (192), Expect = 1.420e-13
Identity = 62/201 (30.85%), Postives = 94/201 (46.77%), Query Frame = 1
Query:  130 KILVCTNTSCRKNGAQATLDMFQDLAPDDIEVEATGCHGECGNGPNVHVLPADAEYKNVFKPASAEAILSVDFGHDVPADVVSAYKEKMYGDQDLKRGAFDAALKRYEAALAFEALQGRGKAL-------GSVMLSKSDALSKHGARRRDPTMLMAAVTAARAAVAALPPGELRPRLRLADSLAAAGNVAAAIMELEEAAA 711
            ++ +CT   C+K G++  +   + L   ++EV A GC G CGNGPN+ +LP     ++V  PA     L    G DV  +++ A + ++ G+     G    A++RY AAL+  A  G G  L         + L + DA  +H                ARAAVA+ P G  +  +RL D+L A G    A   +E A A
Sbjct:   72 EVRICTGKVCKKQGSEQIVRFGEQLGLPNLEVRACGCLGNCGNGPNLVLLPQAQVLRHVATPADLAEALRAFCGADVGDELLRATELRLAGNALAMAGDLRGAVERYRAALS-AAPNGAGAHLIHANLSATHLQLGEKDAALEH----------------ARAAVASAPRGFHKAHVRLVDALYALGRYGEAEAAVEAAVA 255          
BLAST of mRNA_P-wetherbeei_contig1387.3.1 vs. uniprot
Match: A0A835T5X7_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835T5X7_9CHLO)

HSP 1 Score: 73.2 bits (178), Expect = 4.250e-12
Identity = 53/178 (29.78%), Postives = 85/178 (47.75%), Query Frame = 1
Query:  139 VCTNTSCRKNGAQATLDMFQDLAPDDIEVEATGCHGECGNGPNVHVLPADAEYKNVFKPASAEAILSVDFGHDVPADVVSAYKEKMYGDQDLKRGAFDAALKRYEAALAFEALQGRGKALGSVMLSKSDALSKHGARRRDPTMLMAAVTAARAAVAALPPGELRPRLRLADSLAAAGN 672
            +C + +C++ GA   L    DL   +++   TGC G CGNGPN  +LPA+    +V  PA    +L    G  +   V+ A + ++ G+    +G F  A++ Y+ AL  +   G    +  +  + S AL + G +        AA+ +AR AV + P G     +RL D L A G 
Sbjct:    1 MCVHRTCKRQGADNILKFVNDLGLPEVKATPTGCLGNCGNGPNAVLLPAEQLLHHVATPADVTQVLKGLAGASIDESVLQATQLRLAGNACAGQGDFKQAIELYQRALELKPSSG----VHMLHSNLSAALLQAGDKE-------AALQSARKAVESSPRGFHNSTIRLIDCLYALGR 167          
BLAST of mRNA_P-wetherbeei_contig1387.3.1 vs. uniprot
Match: A0A2T1FVG4_9CYAN (Ferredoxin n=5 Tax=Cyanobacteria TaxID=1117 RepID=A0A2T1FVG4_9CYAN)

HSP 1 Score: 70.1 bits (170), Expect = 5.710e-12
Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 1
Query:  127 RKILVCTNTSCRKNGAQATLDMFQDLAPDDIEVEATGCHGECGNGPNVHVLPADAEYKNVFKPASAEAILSVDFGH 354
            R++LVC N +CRK GA   L  FQ L+P ++EV A+ C G+CGNGP V VLP +  Y  V     AE ++++   H
Sbjct:    8 RQVLVCQNRTCRKQGAAKVLAAFQKLSPSEVEVVASSCLGQCGNGPMVLVLPEEVWYSGVC----AEEVVAITEQH 79          
BLAST of mRNA_P-wetherbeei_contig1387.3.1 vs. uniprot
Match: A0A7S3VKW7_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VKW7_DUNTE)

HSP 1 Score: 73.2 bits (178), Expect = 9.770e-12
Identity = 57/191 (29.84%), Postives = 85/191 (44.50%), Query Frame = 1
Query:  106 APGTAIVRKIL-VCTNTSCRKNGAQATLDMFQDLAPD-DIEVEATGCHGECGNGPNVHVLPADAEYKNVFKPASAEAILSVDFGHDVPADVVSAYKEKMYGDQDLKRGAFDAALKRYEAALAFEALQGRGKALGSVMLSKSDALSKHGARRRDPTMLMAAVTAARAAVAALPPGELRPRLRLADSLAAAGN 672
            AP + + +K L VC + +CRK GAQ      QDL  + D+ V    C G CGNGPN+ ++P   E  +V     A  +L+   G  +P  VV +   K  G+     G  D A + Y A +A     G    L  ++ +++    + G           A+  A+ AV   PP  +   +RL D L A G 
Sbjct:   43 APPSPVRKKELRVCLSRTCRKQGAQEVFKFLQDLTQEADVRVRDCSCLGNCGNGPNMALMPEGKELDHVATLDDATRVLTQICGVSIPEPVVKSLALKQQGNAAAIAGRLDEAAENYSAGIALNPSTG----LHLLLCNRASVYLQQG-------RCSEALADAQQAVQLAPPSFVNGWIRLVDCLYALGR 222          
BLAST of mRNA_P-wetherbeei_contig1387.3.1 vs. uniprot
Match: A0A6P0HZV2_9CYAN ((2Fe-2S) ferredoxin domain-containing protein n=3 Tax=unclassified Okeania TaxID=2634635 RepID=A0A6P0HZV2_9CYAN)

HSP 1 Score: 68.9 bits (167), Expect = 1.170e-11
Identity = 34/76 (44.74%), Postives = 44/76 (57.89%), Query Frame = 1
Query:  121 IVRKILVCTNTSCRKNGAQATLDMFQDLAPDDIEVEATGCHGECGNGPNVHVLPADAEYKNVFKPASAEAILSVDF 348
            + R++LVC N +CRK G+   L  F+     DI+VE +GC G+CGNGP V VLP +  Y  VF P     IL   F
Sbjct:    7 VERRLLVCQNRTCRKQGSAKVLAAFESSEVPDIKVEKSGCLGQCGNGPMVLVLPEEVWYSRVF-PQKISTILEKSF 81          
BLAST of mRNA_P-wetherbeei_contig1387.3.1 vs. uniprot
Match: A8JBD3_CHLRE (Predicted protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8JBD3_CHLRE)

HSP 1 Score: 72.4 bits (176), Expect = 1.170e-11
Identity = 57/192 (29.69%), Postives = 93/192 (48.44%), Query Frame = 1
Query:   97 LAIAPGTAIVRKILVCTNTSCRKNGAQATLDMFQDLAPDDIEVEATGCHGECGNGPNVHVLPADAEYKNVFKPASAEAILSVDFGHDVPADVVSAYKEKMYGDQDLKRGAFDAALKRYEAALAFEALQGRGKALGSVMLSKSDALSKHGARRRDPTMLMAAVTAARAAVAALPPGELRPRLRLADSLAAAGN 672
            LA+A  T +  ++ VC + SC++ G++  +    DL   +++   TGC G CGNGPN  +LPA+    +V  PA    +L    G  V   V+ A + ++ G+    +G F  A++ Y+ AL  +       + G+ ML  + + +   A  +D     AA+  A+ AV   P G     +RL D L A G 
Sbjct:   11 LAVAAVTKL--ELQVCIHRSCKRQGSENIIKFVNDLGISEVKATTTGCLGNCGNGPNAVLLPAEQLLHHVATPADVAQVLQSLGGASVDGRVLQATQLRLAGNACAGQGDFKQAIELYKRALELQ------PSSGTHMLYSNMSAALLQAGDKD-----AALDNAQKAVDTSPRGFHNSTIRLIDCLYALGR 189          
BLAST of mRNA_P-wetherbeei_contig1387.3.1 vs. uniprot
Match: A0A2P6VML7_9CHLO (Tetratricopeptide repeat 1 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VML7_9CHLO)

HSP 1 Score: 72.4 bits (176), Expect = 1.190e-11
Identity = 64/201 (31.84%), Postives = 86/201 (42.79%), Query Frame = 1
Query:   91 ASLAIAPGTAIVRKILVCTNTSCRKNGAQATLDMFQDLAPDDIEVEATGCHGECGNGPNVHVLPADAE----YKNVFKPASAEAILSVDFGHDVPADVVSAYKEKMYGDQDLKRGAFDAALKRYEAALAFEALQGRGKALGS---VMLSKSDALSKHGARRRDPTMLMAAVTAARAAVAALPPGELRPRLRLADSLAAAGN 672
            A+LA+A  TA   ++ VCT   C+K G+       QDL    IEV+  GC  ECGNGPNV V+P D       K+V  P+    +L    G  V   ++ A + ++ G+    RG    A + Y   LA E   GR   L +   V L   DA                A+  A AA A  PPG     +R  + L   G 
Sbjct:    3 AALAVAASTAF--QLRVCTGKVCKKQGSPQIAKFAQDLQLPQIEVQTCGCLSECGNGPNVAVIPLDGTRLLVLKHVGTPSRMADLLREVCGAPVDEVLLRATELRLAGNAAAVRGRLAQAAELYSRGLALEPPTGRHLLLSNRSGVRLELGDAEG--------------ALEDASAAAACCPPGFTTAAIRQVEGLLKLGQ 187          
BLAST of mRNA_P-wetherbeei_contig1387.3.1 vs. uniprot
Match: K9TH82_9CYAN (Ferredoxin n=1 Tax=Oscillatoria acuminata PCC 6304 TaxID=56110 RepID=K9TH82_9CYAN)

HSP 1 Score: 68.2 bits (165), Expect = 2.580e-11
Identity = 30/79 (37.97%), Postives = 47/79 (59.49%), Query Frame = 1
Query:  127 RKILVCTNTSCRKNGAQATLDMFQDLAPDDIEVEATGCHGECGNGPNVHVLPADAEYKNVFKPASAEAILSVDFGHDVP 363
            +++L+CTN +CRK G+Q  L  FQ L   D+ +E++ C G+CGNGP V +LP +  Y  V +P    A++       +P
Sbjct:    4 KRVLICTNRTCRKQGSQKVLAAFQSLPIPDVTIESSSCLGQCGNGPMVLILPDEIWYSQV-QPDEVRAVVERHLQRGIP 81          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1387.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CAY5_9STRA2.770e-3240.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2C305_9STRA1.280e-1333.61Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A2V0NLM2_9CHLO1.420e-1330.85Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
A0A835T5X7_9CHLO4.250e-1229.78Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A2T1FVG4_9CYAN5.710e-1244.74Ferredoxin n=5 Tax=Cyanobacteria TaxID=1117 RepID=... [more]
A0A7S3VKW7_DUNTE9.770e-1229.84Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
A0A6P0HZV2_9CYAN1.170e-1144.74(2Fe-2S) ferredoxin domain-containing protein n=3 ... [more]
A8JBD3_CHLRE1.170e-1129.69Predicted protein n=1 Tax=Chlamydomonas reinhardti... [more]
A0A2P6VML7_9CHLO1.190e-1131.84Tetratricopeptide repeat 1 n=1 Tax=Micractinium co... [more]
K9TH82_9CYAN2.580e-1137.97Ferredoxin n=1 Tax=Oscillatoria acuminata PCC 6304... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1387contigP-wetherbeei_contig1387:6355..7264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog88036.EFJ08816
PFAMsTPR_16,TPR_2,TPR_8
Model size747
Max annot lvl35493|Streptophyta
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0008022,GO:0008150,GO:0009987,GO:0030544,GO:0031072,GO:0051087
Exons2
Evalue3.28e-14
EggNOG OGs2CBQC@1|root,2QPZN@2759|Eukaryota,37Q5C@33090|Viridiplantae,3GE4H@35493|Streptophyta
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-14_004590.1
Descriptiontetratricopeptide repeat-containing protein
Cds size744
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186000.009365-CDS-P-wetherbeei_contig1387:6354..68351683186000.009365-CDS-P-wetherbeei_contig1387:6354..6835Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1387 6355..6835 +
1683186000.0201266-CDS-P-wetherbeei_contig1387:7000..72631683186000.0201266-CDS-P-wetherbeei_contig1387:7000..7263Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1387 7001..7263 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1387.3.1prot_P-wetherbeei_contig1387.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1387 6355..7263 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1387.3.1

>prot_P-wetherbeei_contig1387.3.1 ID=prot_P-wetherbeei_contig1387.3.1|Name=mRNA_P-wetherbeei_contig1387.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=248bp
ETECSVERRAPRRPRCQALFAVGFLLLSRCASLAIAPGTAIVRKILVCTN
TSCRKNGAQATLDMFQDLAPDDIEVEATGCHGECGNGPNVHVLPADAEYK
NVFKPASAEAILSVDFGHDVPADVVSAYKEKMYGDQDLKRGAFDAALKRY
EAALAFEALQGRGKALGSVMLSKSDALSKHGARRRDPTMLMAAVTAARAA
VAALPPGELRPRLRLADSLAAAGNVAAAIMELEEAAADLPWDRRAAVE
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mRNA from alignment at P-wetherbeei_contig1387:6355..7264+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1387.3.1 ID=mRNA_P-wetherbeei_contig1387.3.1|Name=mRNA_P-wetherbeei_contig1387.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=910bp|location=Sequence derived from alignment at P-wetherbeei_contig1387:6355..7264+ (Phaeothamnion wetherbeei SAG_119_79)
GAGACAGAATGTTCAGTCGAGCGTCGTGCTCCGAGGCGACCGCGCTGCCA AGCTCTCTTTGCTGTCGGATTCCTGCTTCTTTCGAGGTGCGCAAGCTTGG CTATTGCGCCAGGCACCGCGATAGTGCGTAAGATTCTCGTTTGCACAAAC ACGTCGTGCCGAAAGAACGGCGCGCAGGCCACGCTTGATATGTTTCAGGA TCTTGCGCCGGACGACATTGAGGTGGAGGCCACGGGATGTCACGGTGAAT GTGGCAACGGGCCCAATGTTCACGTGCTGCCTGCAGACGCAGAGTACAAG AACGTCTTCAAGCCAGCGAGCGCAGAAGCCATTTTGTCGGTCGACTTTGG CCACGACGTCCCTGCCGACGTTGTTTCAGCGTACAAGGAGAAGATGTACG GCGATCAGGACTTGAAGCGCGGCGCCTTCGACGCGGCGTTGAAGCGCTAC GAAGCGGCGCTGGCATTCGAAGCTTTGCAAGGTGGTTCCGTTATCTCCTC GCCGCTTTCCTTGATCCTGCTGCTCGTTCATATGGGGTAAATAACCGTTA ATGTTTAACTTTTGTACGGAACGAATCGCTTCATTTCGTACTTGCTGTCC CTATAAATGGCTGCTCTCGAACCGCCCTCTTTTCGACCCTGACCAGGACG AGGGAAAGCTCTGGGTTCCGTGATGCTGTCAAAATCCGACGCGCTCAGCA AGCACGGCGCCCGGCGGCGCGACCCAACAATGCTGATGGCTGCCGTCACC GCCGCCCGCGCCGCTGTCGCCGCGCTGCCGCCGGGCGAGCTTCGGCCGCG CTTGCGGCTCGCCGACAGCCTCGCGGCAGCCGGCAACGTGGCGGCCGCCA TAATGGAGCTGGAAGAGGCAGCTGCTGACTTGCCCTGGGATAGGAGGGCG GCGGTGGAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1387:6355..7264+

>mRNA_P-wetherbeei_contig1387.3.1 ID=mRNA_P-wetherbeei_contig1387.3.1|Name=mRNA_P-wetherbeei_contig1387.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=744bp|location=Sequence derived from alignment at P-wetherbeei_contig1387:6355..7264+ (Phaeothamnion wetherbeei SAG_119_79)
GAGACAGAATGTTCAGTCGAGCGTCGTGCTCCGAGGCGACCGCGCTGCCA
AGCTCTCTTTGCTGTCGGATTCCTGCTTCTTTCGAGGTGCGCAAGCTTGG
CTATTGCGCCAGGCACCGCGATAGTGCGTAAGATTCTCGTTTGCACAAAC
ACGTCGTGCCGAAAGAACGGCGCGCAGGCCACGCTTGATATGTTTCAGGA
TCTTGCGCCGGACGACATTGAGGTGGAGGCCACGGGATGTCACGGTGAAT
GTGGCAACGGGCCCAATGTTCACGTGCTGCCTGCAGACGCAGAGTACAAG
AACGTCTTCAAGCCAGCGAGCGCAGAAGCCATTTTGTCGGTCGACTTTGG
CCACGACGTCCCTGCCGACGTTGTTTCAGCGTACAAGGAGAAGATGTACG
GCGATCAGGACTTGAAGCGCGGCGCCTTCGACGCGGCGTTGAAGCGCTAC
GAAGCGGCGCTGGCATTCGAAGCTTTGCAAGGACGAGGGAAAGCTCTGGG
TTCCGTGATGCTGTCAAAATCCGACGCGCTCAGCAAGCACGGCGCCCGGC
GGCGCGACCCAACAATGCTGATGGCTGCCGTCACCGCCGCCCGCGCCGCT
GTCGCCGCGCTGCCGCCGGGCGAGCTTCGGCCGCGCTTGCGGCTCGCCGA
CAGCCTCGCGGCAGCCGGCAACGTGGCGGCCGCCATAATGGAGCTGGAAG
AGGCAGCTGCTGACTTGCCCTGGGATAGGAGGGCGGCGGTGGAG
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