mRNA_P-wetherbeei_contig13854.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13854.1.1
Unique NamemRNA_P-wetherbeei_contig13854.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13854.1.1 vs. uniprot
Match: A0A836CLB2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLB2_9STRA)

HSP 1 Score: 192 bits (489), Expect = 1.370e-60
Identity = 91/141 (64.54%), Postives = 111/141 (78.72%), Query Frame = 1
Query:    1 TDEDERKKRQSQLAERISNKLQAAFCTFAGFGLAYKTNFVPILMEDKRVNRFWFNIAVACFTINTMIMLYLTIWLPKVQRVQASWNVYCPRMIPAATVIGLICAVTLNLALWNVWGLLTPLILAGVFLGCFFSLHFVPWPC 423
            T E+ERK+R+++LAERISNKL AAF T     + Y T+FV +L++D RV R WFN+A ACF +N +IM YLT+WLP VQRV   WN+YCPR IPAAT +G+IC V+LNLALW+VWG LTPLIL  VF+GC F LHFVPWPC
Sbjct:   19 TSEEERKRRRTELAERISNKLHAAFWTIVAGVVVYYTDFVRVLLQDDRVKRPWFNLATACFAVNCVIMGYLTLWLPLVQRVSTPWNIYCPRAIPAATAVGVICGVSLNLALWSVWGFLTPLILLVVFMGCLFFLHFVPWPC 159          
BLAST of mRNA_P-wetherbeei_contig13854.1.1 vs. uniprot
Match: D8LGK7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGK7_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 4.890e-59
Identity = 86/141 (60.99%), Postives = 113/141 (80.14%), Query Frame = 1
Query:    1 TDEDERKKRQSQLAERISNKLQAAFCTFAGFGLAYKTNFVPILMEDKRVNRFWFNIAVACFTINTMIMLYLTIWLPKVQRVQASWNVYCPRMIPAATVIGLICAVTLNLALWNVWGLLTPLILAGVFLGCFFSLHFVPWPC 423
            T+ ++ K+R+SQLA+RISNKL A F    G  + Y+T+FV +L+ED+RV+R WFNI + CF++N +I+ YLT+WLP V+ ++ SWNVY PR IP ATV+GLICA+ LN++LWNVWG LTPLIL  VF+GC FSLHFVPWPC
Sbjct:   99 TEAEQSKRRRSQLADRISNKLHAFFWVVVGVAVVYRTDFVRVLVEDERVDRLWFNIGLVCFSVNAVILAYLTVWLPHVRGIRVSWNVYSPRAIPTATVVGLICALALNMSLWNVWGFLTPLILFAVFIGCLFSLHFVPWPC 239          
BLAST of mRNA_P-wetherbeei_contig13854.1.1 vs. uniprot
Match: A0A8J2SGJ0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SGJ0_9STRA)

HSP 1 Score: 150 bits (378), Expect = 9.920e-44
Identity = 71/135 (52.59%), Postives = 93/135 (68.89%), Query Frame = 1
Query:   19 KKRQSQLAERISNKLQAAFCTFAGFGLAYKTNFVPILMEDKRVNRFWFNIAVACFTINTMIMLYLTIWLPKVQRVQASWNVYCPRMIPAATVIGLICAVTLNLALWNVWGLLTPLILAGVFLGCFFSLHFVPWPC 423
            KKR+S+LAE+++ K+QAA    AG  +AY+T+   +L+     NRFW ++A ACF  N ++  YLT+WLP VQR+   WNVYCPR+IP  TV+GL C  +L   LW VWGLLTPLIL  V + C  SLHF+P PC
Sbjct:   24 KKRRSELAEQVATKIQAAAWVAAGGFVAYQTDLPVVLLAGTETNRFWCDVAAACFAANCVLCFYLTVWLPHVQRIDLEWNVYCPRVIPTMTVLGLTCGFSLIRGLWPVWGLLTPLILGLVAMACLMSLHFIPIPC 158          
BLAST of mRNA_P-wetherbeei_contig13854.1.1 vs. uniprot
Match: A0A7S3JQ39_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JQ39_9STRA)

HSP 1 Score: 142 bits (358), Expect = 1.010e-40
Identity = 69/134 (51.49%), Postives = 89/134 (66.42%), Query Frame = 1
Query:   19 KKRQSQLAERISNKLQAAFCTFAGFGLAYKTNFVPILMEDKRVNRFWFNIAVACFTINTMIMLYLTIWLPKVQRVQASWNVYCPRMIPAATVIGLICAVTLNLALWNVWGLLTPLILAGVFLGCFFSLHFVPWP 420
            +KR+++ AE I+ K+QA      G  + Y TN   +L++D  V+RFW NIA A F IN ++  YLT+WLP V R+   WN+YCPR+IP  T +GLICA +L   LW VWGLLTPLILA  F+ C   LHFVP P
Sbjct:   22 RKRRAEAAELIATKIQAVVWVVVGGFVVYHTNMPYVLLQDPSVHRFWLNIAAATFAINAVLCSYLTLWLPYVARIDIEWNIYCPRIIPTMTAVGLICAFSLIRGLWPVWGLLTPLILAITFMACIMLLHFVPAP 155          
BLAST of mRNA_P-wetherbeei_contig13854.1.1 vs. uniprot
Match: W7TLQ7_9STRA (Transmembrane protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TLQ7_9STRA)

HSP 1 Score: 126 bits (317), Expect = 6.930e-34
Identity = 60/134 (44.78%), Postives = 89/134 (66.42%), Query Frame = 1
Query:   19 KKRQSQLAERISNKLQAAFCTFAGFGLAYKTNFVPILMEDKRVNRFWFNIAVACFTINTMIMLYLTIWLPKVQRVQASWNVYCPRMIPAATVIGLICAVTLNLALWNVWGLLTPLILAGVFLGCFFSLHFVPWP 420
            K+ ++++ ERIS KLQA           + TNFV ++++D+R+NR +F++A+ C  IN  I LYLT++L  ++ +   W  YCPRMIPAAT  G++CA+ L  +LW V+G   PLIL  +F G  FS+HF+PWP
Sbjct:   73 KRERAEIWERISVKLQAGAWVLGMMATLHYTNFVHVVLDDERLNRVYFHLAMICLGINLCIGLYLTVYLQLIKGINIEWATYCPRMIPAATFSGVVCAICLVSSLWPVYGFFAPLILLVIFFGSMFSMHFIPWP 206          
BLAST of mRNA_P-wetherbeei_contig13854.1.1 vs. uniprot
Match: A0A7S2JTX7_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JTX7_9STRA)

HSP 1 Score: 123 bits (309), Expect = 3.580e-33
Identity = 61/131 (46.56%), Postives = 86/131 (65.65%), Query Frame = 1
Query:   25 RQSQLAERISNKLQAAFCTFAGFGLAYKTNFVPILMEDKRVNRFWFNIAVACFTINTMIMLYLTIWLPKVQRVQASWNVYCPRMIPAATVIGLICAVTLNLALWNVWGLLTPLILAGVFLGCFFSLHFVPW 417
            R+   AERIS+K  A         + Y T+F  + + D++++R  F ++V C  INT++ LYLT++LPK+ +V A W+VYCPR+IP  T IG +CAV L  A + VWG L+P+IL  VFLG  F LHF+PW
Sbjct:   35 RKKTRAERISDKFHALCWVIISGAVVYYTDFFNVFLHDEKIHRPTFLLSVVCLVINTILTLYLTVYLPKIAQVTAPWDVYCPRVIPTMTGIGCLCAVLLIRASYPVWGFLSPIILGIVFLGFLFGLHFIPW 165          
BLAST of mRNA_P-wetherbeei_contig13854.1.1 vs. uniprot
Match: A0A485KKF8_9STRA (Aste57867_8441 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KKF8_9STRA)

HSP 1 Score: 123 bits (308), Expect = 6.920e-33
Identity = 58/125 (46.40%), Postives = 77/125 (61.60%), Query Frame = 1
Query:   40 AERISNKLQAAFCTFAGFGLAYKTNFVPILMEDKRVNRFWFNIAVACFTINTMIMLYLTIWLPKVQRVQASWNVYCPRMIPAATVIGLICAVTLNLALWNVWGLLTPLILAGVFLGCFFSLHFVP 414
            AE IS KL A         L Y  +   +   D RV+R +FNI + CF IN  I LYL +WLP ++++   W+VYCPRM+P AT +GL+CA+T  + LW VWGL TP IL  +FLG   + HF+P
Sbjct:   51 AEWISTKLHALLWVLGAGSLVYTLDVFRVAFRDARVHRVYFNIGLVCFGINCCITLYLAVWLPYIKKIDLEWSVYCPRMVPTATAVGLLCALTFTIGLWPVWGLFTPGILFVLFLGSLMTAHFLP 175          
BLAST of mRNA_P-wetherbeei_contig13854.1.1 vs. uniprot
Match: A0A6G0XCK9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XCK9_9STRA)

HSP 1 Score: 122 bits (307), Expect = 8.520e-33
Identity = 58/125 (46.40%), Postives = 78/125 (62.40%), Query Frame = 1
Query:   40 AERISNKLQAAFCTFAGFGLAYKTNFVPILMEDKRVNRFWFNIAVACFTINTMIMLYLTIWLPKVQRVQASWNVYCPRMIPAATVIGLICAVTLNLALWNVWGLLTPLILAGVFLGCFFSLHFVP 414
            AE +S K+ A         LAY  +   +   D RV+R +FNI + CF IN  I +YL +WLP V+++   W+VYCPRMIP ATV+GL+CA+ L + LW VWG  TP IL  +FLG   + HF+P
Sbjct:   46 AEWVSTKIHAVLWIVGAASLAYFLDVFRVAFRDARVHRIYFNIGLVCFGINCCITMYLAVWLPYVKKIDLEWSVYCPRMIPTATVVGLLCALMLTIGLWPVWGFFTPGILFVLFLGALMTAHFLP 170          
BLAST of mRNA_P-wetherbeei_contig13854.1.1 vs. uniprot
Match: A0A1W0A176_9STRA (Transmembrane protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A176_9STRA)

HSP 1 Score: 122 bits (306), Expect = 9.900e-33
Identity = 59/125 (47.20%), Postives = 80/125 (64.00%), Query Frame = 1
Query:   40 AERISNKLQAAFCTFAGFGLAYKTNFVPILMEDKRVNRFWFNIAVACFTINTMIMLYLTIWLPKVQRVQASWNVYCPRMIPAATVIGLICAVTLNLALWNVWGLLTPLILAGVFLGCFFSLHFVP 414
            AE +S KL AA    +   LAY  + + +   D RV+R +FNI + CF +N  I LYL +WLP V+++   W+VYCPRMIP AT+IG++CA+   L LW VWG  TP IL  +FLG   + HF+P
Sbjct:   39 AEYVSTKLHAALWIGSAVALAYCLDVLNVAFHDPRVHRLYFNIGLVCFGMNCCITLYLAVWLPYVKKIDLEWSVYCPRMIPTATIIGILCALGFILGLWPVWGFFTPGILFVLFLGSLMTAHFLP 163          
BLAST of mRNA_P-wetherbeei_contig13854.1.1 vs. uniprot
Match: A0A024UNE8_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UNE8_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.960e-32
Identity = 60/126 (47.62%), Postives = 81/126 (64.29%), Query Frame = 1
Query:   40 AERISNKLQAAFCTFAGFG-LAYKTNFVPILMEDKRVNRFWFNIAVACFTINTMIMLYLTIWLPKVQRVQASWNVYCPRMIPAATVIGLICAVTLNLALWNVWGLLTPLILAGVFLGCFFSLHFVP 414
            AE IS K+ A F    G G L Y  + + +   D RV+R +FN+ + CF INT I LYL IWLP V+++   WNVYCPRM+P AT++G++CA+   + LW VWG  TP IL  +FLG   + HF+P
Sbjct:   51 AEVISTKIHA-FLWIVGAGFLLYYLDVMHVAFRDSRVHRVYFNLGLVCFGINTCITLYLAIWLPYVKKIDLEWNVYCPRMVPTATIVGVVCALMFTMGLWPVWGFFTPGILFVLFLGALMTAHFLP 175          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13854.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CLB2_9STRA1.370e-6064.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LGK7_ECTSI4.890e-5960.99Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8J2SGJ0_9STRA9.920e-4452.59Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3JQ39_9STRA1.010e-4051.49Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
W7TLQ7_9STRA6.930e-3444.78Transmembrane protein n=1 Tax=Nannochloropsis gadi... [more]
A0A7S2JTX7_9STRA3.580e-3346.56Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A485KKF8_9STRA6.920e-3346.40Aste57867_8441 protein n=1 Tax=Aphanomyces stellat... [more]
A0A6G0XCK9_9STRA8.520e-3346.40Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1W0A176_9STRA9.900e-3347.20Transmembrane protein n=1 Tax=Thraustotheca clavat... [more]
A0A024UNE8_9STRA1.960e-3247.62Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13854contigP-wetherbeei_contig13854:57..1016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LGK7
Model size426
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue8.02e-60
EggNOG OGs2BN0F@1|root,2S1N7@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_001670.1
Cds size426
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185999.388702-CDS-P-wetherbeei_contig13854:56..1651683185999.388702-CDS-P-wetherbeei_contig13854:56..165Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13854 57..165 -
1683185999.3997107-CDS-P-wetherbeei_contig13854:470..6351683185999.3997107-CDS-P-wetherbeei_contig13854:470..635Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13854 471..635 -
1683185999.4089983-CDS-P-wetherbeei_contig13854:864..10161683185999.4089983-CDS-P-wetherbeei_contig13854:864..1016Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13854 865..1016 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13854.1.1prot_P-wetherbeei_contig13854.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13854 57..1016 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13854.1.1

>prot_P-wetherbeei_contig13854.1.1 ID=prot_P-wetherbeei_contig13854.1.1|Name=mRNA_P-wetherbeei_contig13854.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=142bp
TDEDERKKRQSQLAERISNKLQAAFCTFAGFGLAYKTNFVPILMEDKRVN
RFWFNIAVACFTINTMIMLYLTIWLPKVQRVQASWNVYCPRMIPAATVIG
LICAVTLNLALWNVWGLLTPLILAGVFLGCFFSLHFVPWPC*
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mRNA from alignment at P-wetherbeei_contig13854:57..1016-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13854.1.1 ID=mRNA_P-wetherbeei_contig13854.1.1|Name=mRNA_P-wetherbeei_contig13854.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=960bp|location=Sequence derived from alignment at P-wetherbeei_contig13854:57..1016- (Phaeothamnion wetherbeei SAG_119_79)
ACCGACGAGGATGAGCGCAAGAAGCGGCAGTCGCAGCTGGCGGAGCGCAT CAGCAACAAGCTGCAGGCGGCGTTTTGCACATTTGCGGGCTTCGGGTTGG CGTACAAGACGAATTTTGTGCCAATACTTATGGAAGACAAGCGGGTCAAC CGGTAAGGCGATAGAGCGGTGTACGCACATAGCAGCACTTTGAAGAGTTT TCGGGGGCCAAAGATGCAAAAAATCATTGACTTTTGATTGAAACGCGCAT CCTTACAGACTTGGATCGTAGTCTTCAGTTGTAACAAAACCGGACTGCAC CTAGTGAAAGACACCTTCCCTTATCGTGCGTGAAGAACACCTCCTCGGCG CCGCCGTGCCGCTGTGCGCCCCGCCCGCCAGGTTTTGGTTTAACATCGCC GTGGCGTGCTTCACCATCAACACAATGATCATGCTGTACCTGACTATCTG GCTGCCAAAAGTGCAGCGCGTCCAGGCCTCGTGGAACGTCTACTGCCCGC GCATGATCCCCGCCGCCACCGTCATCGGCCTCATCTGCGCCGTCACGTGA GTATTGATAATTCCAGAGTTGTTACTGCTGCTTTGCAGCACACCTCCCAA TACCAAACCACTGCTTGCGGTGACGGATGGTTTGTGTGGTTGAGATTTAC GAAGGGTCGGTTTATGGGCCTGCTCTTGCCGACGGAAATAGGACATTGCT GTTATTGTAATGTCCTCTTTTCTTCTGTATGGTATGTTGTGGCATTCGAG CGGTCTTCCCATGTTAAGGCGGCTGACAAATCTCGAGGACAGTCTTCAAA TATAAGTGGCCTCACATATTTTTTGTTTGCTGCGCCTTTCGTCTTGTGCA GGTTAAACCTGGCGTTGTGGAACGTTTGGGGCTTGCTGACACCGCTCATA TTGGCCGGCGTCTTCCTTGGCTGCTTTTTCAGCCTACACTTTGTGCCGTG GCCATGTTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13854:57..1016-

>mRNA_P-wetherbeei_contig13854.1.1 ID=mRNA_P-wetherbeei_contig13854.1.1|Name=mRNA_P-wetherbeei_contig13854.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig13854:57..1016- (Phaeothamnion wetherbeei SAG_119_79)
ACCGACGAGGATGAGCGCAAGAAGCGGCAGTCGCAGCTGGCGGAGCGCAT
CAGCAACAAGCTGCAGGCGGCGTTTTGCACATTTGCGGGCTTCGGGTTGG
CGTACAAGACGAATTTTGTGCCAATACTTATGGAAGACAAGCGGGTCAAC
CGGTTTTGGTTTAACATCGCCGTGGCGTGCTTCACCATCAACACAATGAT
CATGCTGTACCTGACTATCTGGCTGCCAAAAGTGCAGCGCGTCCAGGCCT
CGTGGAACGTCTACTGCCCGCGCATGATCCCCGCCGCCACCGTCATCGGC
CTCATCTGCGCCGTCACGTTAAACCTGGCGTTGTGGAACGTTTGGGGCTT
GCTGACACCGCTCATATTGGCCGGCGTCTTCCTTGGCTGCTTTTTCAGCC
TACACTTTGTGCCGTGGCCATGTTAG
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